Spo04593 (gene) | SpinachBase

Overview


Name	Spo04593
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00926 : 12622 .. 16067 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATACAAAGAGCTACGTGAAGGTTCTCTTGCTTACCGTTGCGATCACCATGATCGCGGTGGCCAAGGACGCCGCGGCGCAGGATGTATGCAAAGGAATCGACGAACGTTGCTTTGCCGATGCAGACTGTTGTCCGGGATCTGCTTGCCACGGACCGATAGTCTGGCACTATACCACTTGCTTTTCGTGCGCAGGGAGCGGGGCTTATTGCAGCGCCTTTACCCCGTGTTGCCCCGGTTACTCATGCAACAACATATTTGGTGGTTCATGCTACATTTAGACCCGTGCGATGCACTTGCCTTCATATATACATGCTTTTGTTTGTTTCATTTCCTGAATGTTTGTTTGATTAAGTACTGTAATACGTAGTAAGTCTGTAATTGGACCTTTCTAGCTAGCTAGGTCTTTACATATTTATACGTACTAATTATAATTTTTACATTGCTTGAGAAATTATATCTATGTTAAGTTTGAATTTTATCCGCCAACAAGGTAAGTTTGTAGCTAAGTTTGCTGCTGTTGGTGTTATCATCATCGTTGCTTTTATGATGCAACCAACAAAGTAGAGTTAGGTACGTGACGGGCCGTGTAGGTACGTTCATGCACGTGCCTTTTACCCTAATGGTGCCTAGAAGGTCCAAGGAAAAGTCATGTTGTATCGGGCTCGTGCCTCTCTTATTCCATAAATAAGGTCCATATATGCATGGCCTGTCTCACGTGTCGTGTCGGGCTTGGGCAGATCTTGTCGTGCTAAAGGCTCCCTTACTAATTTTAAGATTTTTCTATTAAGTTTGCCGACATGCGTTACGGCCTGTAGTGCTCGTGTCAAATTTATAAAATGTTGTTCATACAAGACCATGACCATCGCCATACCTCTCAGATCATGTTGTGCCGTGTTTACAACGGGCTTGTGCCGTGCTCGACCAATTTTGATCGAGCTTGGCCGGGCTGCCCGCGTGCTGGCCCTCTCTATGGTCATTGCCATACCCATGTCCAACTCTACGACTAAGGTGGTTGACATCACCAAGCAAATTAACGAGTAATGAATTAAGCTTGTTATTGGCTAGTTTCTTTTATCAAAAAAGGCATTATTTTCATTAACCAACCCAAAGTCAACTAACATGGACGTACAATTGAATAATTGATCGAAGATCCACTGCAAATATCACATTATCTTAAGAGTTTGGTTCCAAACTCCATTTCAAACTAGTGATAAACTCACCTAAAGAAATAGAAAAAACAGAGCTAGCGAAAGAGGAAGTCAAGATTGGAAAGTTGGTCAAATCGACTCAAATGGCCTAACGAGACCGACAAGTACATTTTTGAGGGGGAAAATACTGTAAAACGTCTCACAATTTTAACCCATATCTTCAAATTGCTACCCCGTATGAAAATAGAAAATTTATCCAACAAAATCCAAAATTAGGTTATGGTGATACTTTTATAAGGCAATTGACAATGAATCGAATATGACTCAACCCAATCCGTATCGACCCAAACCCAAAATTCACCCGGTTTATTCTTATTAGAACTTTACCTGACTCGAATTGACCTGACTTAAATAACTCGATTGCCACCTCTATAATGGATACTTCATAGTTCGCGAGCTATGACTCGACTCGACTCGACTCGTCAGATGTCTCCCGTCCATGAGCAGAAACCAAAAATTGGGTCCATCATAAATTAGTGAATTATGATAACCGGTTCAATTTCCTTGACTTTTTTCCTATTTTATCTTTTACTATAAAATACATGGATAATTTTACAATAGCTACATTAATTTGGTAGCCACTACAAGCTTTTAATCTCGACCTTATATTTTGATACACGAAATCTACACCATTTATTTTTGTTGACTTGACTTTTGAAGAAAATTAAAAATTAAAAATTAATTAACCTCCATAAACGGTTTGTTTTCTTTTTAAGAAGATCTTAATAGTGCGTTGGTTCTCAAAGTATGATGATTTGTATTAATACGGGGTGATTGTTGGGTGGATGAGAGAATATGATGAATAACGATGGTAGTATTTGATTGATAATGTGGTTTTGAATAACTGTGCCTTTTCTTTTCTTTTTCTTTTTTTTGAAACGCAGTTTTTTGTTTTTGTTTTTTATTTTTTATTTATTTTTATGATTAAATAAATAAGCGGATTAGATTTATTCTTAAAATTAAAGGGTTGAGATTTGCTAAAATTATGGTGGCTACCATTTTATTGTAGCTATTGAAAAACCTTCCAAAATACATTTACAAACACACATCAGATATCCAAAAATACTTCCTTAATTACAAGCCTAGACTCCTAGTCAATGTATACAAGTCGTATGTTAATCTCCAACCACAAACAAAACAAATAAAATAAAAAATCGGAGGAATTCAACGTTTGTGTTTGAAATTAAACCAACGAATCAAATATTCTTCCCTCTTTCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCTCTTCCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCCTTTCTCTCTCCTTGCCTCCACGACGAACTTCGAGGGTTTAATTTTATGGATCCTTCCGTCTCCAACGATTCTCAGCACTGCAATTTCTTCAAATCTCTCTTTTCTAGATTCACGCCTTGGTTTCGTTACCTCCAGTTTAGGTTTCCGGTTTAGATTCTTTTACCGATTTTATTTTTCGGTTGATTATTTGACGCTCATTCAGGTATTAATTTCGAATTAGCACTTTATGATGATTTTTAATGGAAATATGCAAGCTTATTGATGCTAAATTTTTGCAAATTTGTTTATTAGTGCTTTGATTATATGTTTTATTGGCAATTGATGATGGAAGTACTGTTATCTGAGATGATTAATCAAAATTGAGCATTTTTATAAAAAAAATTATCAGTTTAATTACTGTTTATTTAATCAATCTATAGCAAAGTTTAATGTTAACCATGTTTAAGCTTAATCACTGTTTGATAATCAAATTTGATCAAAATTTCTGATTCTTCCAATTCGTTCTAGCTCAGCTGTTGTCTTGGTAGCCAAAATTCACCAAATTTAGTACCTTTATTGCTTGTTTGAGTTATTCCTTACTCCTTGTATAAACTTTTAATAATGGGTATATATCAATAACTAAAGGACGAAATTTTACGGGATTTTGGTCGCTAGGATTTGTTAGTTGAAAGTTTGAGCCACTTCGGAAAATTGGAAGTTGTAACTTTGTCTTGAATTTGTTTGATAATAGATAAAGTATTGAAAATTTCAGGATTTGTATTCCTACTTAGTTCAAATAATTTAATAATCATATGCCATAATGTTCACTACTTCACCGTAAAATTCGTCGAATTCATATTTCTATTCATACAACATAATGCAGAGTTTTAAGACTGCTTTTATGTATTATGTGCCGGTTTTCAGGTTGTATTGTTGTAG

mRNA sequence

ATGCATACAAAGAGCTACGTGAAGGTTCTCTTGCTTACCGTTGCGATCACCATGATCGCGGTGGCCAAGGACGCCGCGGCGCAGGATGTATGCAAAGGAATCGACGAACGTTGCTTTGCCGATGCAGACTGTTGTCCGGGATCTGCTTGCCACGGACCGATAGTCTGGCACTATACCACTTGCTTTTCGTGCGCAGGGAGCGGGGCTTATTGCAGCGCCTTTACCCCGAATTCAACGTTTGTGTTTGAAATTAAACCAACGAATCAAATATTCTTCCCTCTTTCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCTCTTCCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCCTTTCTCTCTCCTTGCCTCCACGACGAACTTCGAGGGTTTAATTTTATGGATCCTTCCGTCTCCAACGATTCTCAGCACTGCAATTTCTTCAAATCTCTCTTTTCTAGATTCACGCCTTGGTTTCGTTACCTCCAGTTTAGGTTTCCGGTTTAGATTCTTTTACCGATTTTATTTTTCGGTTGATTATTTGACGCTCATTCAGGTTGTATTGTTGTAG

Coding sequence (CDS)

ATGCATACAAAGAGCTACGTGAAGGTTCTCTTGCTTACCGTTGCGATCACCATGATCGCGGTGGCCAAGGACGCCGCGGCGCAGGATGTATGCAAAGGAATCGACGAACGTTGCTTTGCCGATGCAGACTGTTGTCCGGGATCTGCTTGCCACGGACCGATAGTCTGGCACTATACCACTTGCTTTTCGTGCGCAGGGAGCGGGGCTTATTGCAGCGCCTTTACCCCGAATTCAACGTTTGTGTTTGAAATTAAACCAACGAATCAAATATTCTTCCCTCTTTCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCTCTTCCTGGGTTTCTCCCTTCTTCCTTTCTCCTCTTCAAAAACCTTCTTCCCCTTTCTCTCTCCTTGCCTCCACGACGAACTTCGAGGGTTTAATTTTATGGATCCTTCCGTCTCCAACGATTCTCAGCACTGCAATTTCTTCAAATCTCTCTTTTCTAGATTCACGCCTTGGTTTCGTTACCTCCAGTTTAGGTTTCCGGTTTAGATTCTTTTACCGATTTTATTTTTCGGTTGATTATTTGACGCTCATTCAGGTTGTATTGTTGTAG

Protein sequence

MHTKSYVKVLLLTVAITMIAVAKDAAAQDVCKGIDERCFADADCCPGSACHGPIVWHYTTCFSCAGSGAYCSAFTPNSTFVFEIKPTNQIFFPLSGFLPSSFLLFKNLLPSSWVSPFFLSPLQKPSSPFSLLASTTNFEGLILWILPSPTILSTAISSNLSFLDSRLGFVTSSLGFRFRFFYRFYFSVDYLTLIQVVLL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04593.1	Spo04593.1	mRNA

Homology

[Close]

BLAST of Spo04593.1 vs. NCBI nr
Match: gi|870863835|gb|KMT14982.1| (hypothetical protein BVRB_3g064870 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 60.5 bits (145), Expect = 3.900e-6
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1

		  
Query: 1  MHTKSYVKVLLLTVAITMIAVAKDAAAQDVCKGIDERCFADADCCPGSACHGPIVWHYTT 60
          M+TK Y  VLLL   ++++  A  AAAQ  CKGIDE C  D +CCPG+AC     W++  
Sbjct: 6  MNTKKYYGVLLL---LSIVMAATIAAAQS-CKGIDESCGLDEECCPGTAC-----WNWNR 65

Query: 61 CFSCAGSGAYC 72
          C  C G+GA C
Sbjct: 66 CIGCPGAGASC 67

[Close]

BLAST of Spo04593.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CN75_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064870 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.700e-6
Identity = 34/71 (47.89%), Postives = 44/71 (61.97%), Query Frame = 1

		  
Query: 1  MHTKSYVKVLLLTVAITMIAVAKDAAAQDVCKGIDERCFADADCCPGSACHGPIVWHYTT 60
          M+TK Y  VLLL   ++++  A  AAAQ  CKGIDE C  D +CCPG+AC     W++  
Sbjct: 6  MNTKKYYGVLLL---LSIVMAATIAAAQS-CKGIDESCGLDEECCPGTAC-----WNWNR 65

Query: 61 CFSCAGSGAYC 72
          C  C G+GA C
Sbjct: 66 CIGCPGAGASC 67

The following BLAST results are available for this feature:

BLAST of Spo04593.1 vs. NCBI nr
BLAST of Spo04593.1 vs. UniProtKB/TrEMBL
BLAST of Spo04593.1 vs. ExPASy Swiss-Prot
BLAST of Spo04593.1 vs. TAIR (Arabidopsis)

BLAST of Spo04593.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|870863835\|gb\|KMT14982.1\|	3.9e-6	47.8	hypothetical protein BVRB_3g06...	[more]

BLAST of Spo04593.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0J8CN75_BETVU	2.7e-6	47.8	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo04593.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo04593.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo16079	0.73	Barchart \| Table
Spo15447	0.72	Barchart \| Table
Spo28146	0.71	Barchart \| Table
Spo05496	0.70	Barchart \| Table
Spo17860	0.69	Barchart \| Table
Spo16345	0.69	Barchart \| Table
Spo10923	0.68	Barchart \| Table
Spo13361	0.68	Barchart \| Table
Spo01448	0.67	Barchart \| Table
Spo07603	0.67	Barchart \| Table
Spo08337	0.67	Barchart \| Table
Spo11398	0.67	Barchart \| Table
Spo19812	0.67	Barchart \| Table
Spo21484	0.67	Barchart \| Table
Spo24046	0.67	Barchart \| Table
Spo26887	0.67	Barchart \| Table
Spo17044	0.66	Barchart \| Table
Spo19870	0.66	Barchart \| Table
Spo21748	0.66	Barchart \| Table
Spo15639	0.66	Barchart \| Table
Spo08339	0.66	Barchart \| Table
Spo17908	0.66	Barchart \| Table
Spo18357	0.66	Barchart \| Table
Spo26919	0.66	Barchart \| Table
Spo06972	0.65	Barchart \| Table
Spo06766	0.65	Barchart \| Table
Spo06852	0.65	Barchart \| Table
Spo12853	0.65	Barchart \| Table