Spo04725 (gene)

Overview
NameSpo04725
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01774 : 111849 .. 112632 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAAGAGTAACATCATCGTCTCAGTAGTCAGTAGTACGCCCACATTAACTACAGTACATCTTCTCGGTAACTACAGAGTACTTCGTGTTTATGACTTGAGATTGAACCTGGTCTATTTTACGGTATCCAAAAATAAGCAACAATAACATCTTCTTGGTAACTACGAAGTACTTTGATATTAACGGGCATAGTTGATTAACATTGTACGAAATATTTCGTGTTAATAACCTGAGATCGAACATGGTCCATGTTACGATACCCAAAGATGAGGAACAATAACATCTTCTCGGTAACTATGAAGTACTCTGAAATTAGCTATTCTGTAGTTTAGTTGATTAACATTGTATATGGAATATTTCTTGTTTGTGAACTGAGATCGAACCTTGTCTACATTATGGTACCTGAAAATGAGCAACAGTAAAATCATGTTTGAGTTGTTTCACATTTCACATATAAGTAGAGCTGCTTTTTGGTAAACCCAACAAGATTAGCAAAGCATCTGTCTCATTTTCACAAGGACCCGCCTCACTGCTTTTTCTCTCTCCTCTTTCTTTCTTTATCTCTCTCTCTCTTTCTCTCTTTTTGTCTCAGTCCTCCGATCAATGTATCAACCCAGCCACCCCTTTGTCTGACCACTACTCACTCCTCACTACTGTTCTCACTCACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTAAATTATTCATTTTATCAACAAACCAAATATGTGAAATTGTTTCCACCATTTTCACAAATTCACTAG

mRNA sequence

ATGAGCAAGAGTAACATCATCGTCTCAGTAGTCAGTAGTACGCCCACATTAACTACAGTACATCTTCTCGTAGAGCTGCTTTTTGGTAAACCCAACAAGATTAGCAAAGCATCTGTCTCATTTTCACAAGGACCCGCCTCACTGCTTTTTCTCTCTCCTCTTTCTTTCTTTATCTCTCTCTCTCTTTCTCTCTTTTTGTCTCAGTCCTCCGATCAATGTATCAACCCAGCCACCCCTTTGTCTGACCACTACTCACTCCTCACTACTGTTCTCACTCACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTAAATTATTCATTTTATCAACAAACCAAATATGTGAAATTGTTTCCACCATTTTCACAAATTCACTAG

Coding sequence (CDS)

ATGAGCAAGAGTAACATCATCGTCTCAGTAGTCAGTAGTACGCCCACATTAACTACAGTACATCTTCTCGTAGAGCTGCTTTTTGGTAAACCCAACAAGATTAGCAAAGCATCTGTCTCATTTTCACAAGGACCCGCCTCACTGCTTTTTCTCTCTCCTCTTTCTTTCTTTATCTCTCTCTCTCTTTCTCTCTTTTTGTCTCAGTCCTCCGATCAATGTATCAACCCAGCCACCCCTTTGTCTGACCACTACTCACTCCTCACTACTGTTCTCACTCACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTACTCTCTAAATTATTCATTTTATCAACAAACCAAATATGTGAAATTGTTTCCACCATTTTCACAAATTCACTAG

Protein sequence

MSKSNIIVSVVSSTPTLTTVHLLVELLFGKPNKISKASVSFSQGPASLLFLSPLSFFISLSLSLFLSQSSDQCINPATPLSDHYSLLTTVLTHSLLSTLYSLLSTLYSLNYSFYQQTKYVKLFPPFSQIH
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo04725.1Spo04725.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo04725.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04725.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04725.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo04725.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0006412 translation
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0000023 maltose metabolic process
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:0042908 xenobiotic transport
biological_process GO:0007165 signal transduction
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010207 photosystem II assembly
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0009651 response to salt stress
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0008152 metabolic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0006457 protein folding
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0010050 vegetative phase change
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0046686 response to cadmium ion
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010158 abaxial cell fate specification
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0009850 auxin metabolic process
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0048438 floral whorl development
biological_process GO:0048439 flower morphogenesis
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0043090 amino acid import
cellular_component GO:0000325 plant-type vacuole
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0016020 membrane
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0009523 photosystem II
cellular_component GO:0009536 plastid
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005795 Golgi stack
cellular_component GO:0005634 nucleus
molecular_function GO:0043621 protein self-association
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003756 protein disulfide isomerase activity
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003924 GTPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo051250.77Barchart | Table
Spo250080.75Barchart | Table
Spo108350.74Barchart | Table
Spo218080.73Barchart | Table
Spo097690.71Barchart | Table
Spo002050.71Barchart | Table
Spo053070.71Barchart | Table
Spo059420.71Barchart | Table
Spo182230.70Barchart | Table
Spo263550.70Barchart | Table
Spo116880.70Barchart | Table
Spo026480.70Barchart | Table
Spo169600.69Barchart | Table
Spo122280.69Barchart | Table
Spo191230.69Barchart | Table
Spo155850.69Barchart | Table
Spo062780.69Barchart | Table
Spo175780.69Barchart | Table
Spo137830.69Barchart | Table
Spo257170.69Barchart | Table
Spo149380.68Barchart | Table
Spo002140.68Barchart | Table
Spo041420.68Barchart | Table
Spo042000.68Barchart | Table
Spo083510.68Barchart | Table
Spo093870.68Barchart | Table
Spo115090.68Barchart | Table
Spo192880.68Barchart | Table
Spo218330.68Barchart | Table
Spo232490.68Barchart | Table
Spo200500.67Barchart | Table
Spo229990.67Barchart | Table
Spo211550.67Barchart | Table
Spo149140.67Barchart | Table
Spo008720.67Barchart | Table
Spo246230.67Barchart | Table
Spo233820.67Barchart | Table
Spo233320.67Barchart | Table
Spo123700.67Barchart | Table
Spo269750.67Barchart | Table
Spo270810.66Barchart | Table
Spo150140.66Barchart | Table
Spo154610.66Barchart | Table
Spo024800.66Barchart | Table
Spo282650.66Barchart | Table
Spo236150.66Barchart | Table
Spo013050.66Barchart | Table
Spo251960.66Barchart | Table
Spo012520.66Barchart | Table
Spo131800.66Barchart | Table
Spo039060.65Barchart | Table
Spo264300.65Barchart | Table
Spo044340.65Barchart | Table
Spo268580.65Barchart | Table
Spo143500.65Barchart | Table
Spo121300.65Barchart | Table
Spo216350.65Barchart | Table
Spo021060.65Barchart | Table
Spo214460.65Barchart | Table
Spo209300.65Barchart | Table
Spo111960.65Barchart | Table
Spo026650.65Barchart | Table