Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ACAGCTATCTTAATGACAACGAAACCCAAGACAAAAAGAGAGATACTCCCTATACGAATCAGACACTACTCTGTTCCATTTTTGTGGGCCCTCTTCTCCACAACTTCTCTAATTCTATAACTCAGTCCAAATATTCTGAAGAATTCACCTCATTTATTTTTGTTCTTTCCCAAATTCCACCAATTTTCTTACATGAAGAACAGCACTTAACATTAAAATTTCCCCAAAATAAAAATTCACCAGTTTTATCCCACAAAATGGCTGGATTGAAGAAAACGTCAATTTTACGGCAATCTTCGTATAATTCACTTTACACAAATCCCCTCATTGATCCGAGTAACAATGATGATGTTGATGATAATGTGAATGTTATTCCTGTTTGTTTTAAAAACAACAACATTTTGAGTGGTAAAGAAAATAATCCCATGTCGAGGACAAAGAAAGTTTCAAAGTTTGTTGATAAAAAGGAGAAATTAGTAGCAAATATAAGTGAATATTGTAGTAAGAAGCAATACCATTACCCAGATGGGAAATCAATGCAGAATAGTAAAGAAAGGGCATTGAAGGCTTCTTCTCTTCAATTGTGTATTCAACTGAATGAGCCGGACTCGAGTTTCGGTTTTGGTTTGGGTTTTAAGGTATGGGATGCTATTGAGGAGACGGAGAGCGCGAAATCGGTGAATATGTGGGATTATTCTGACTCTGAGGCTGCTCCAGCTTCTTCTTGGTCGACTTTGCCTAATAGGTTTGTGATCAATTTTAAAAATTAATTAATTAATTAATTAATTAGAATAAGGGTATGTGATAATATTAGTTTGAATTATGCAGGGCTTTGTTATGTAGACCGTTGCCAATGGATGTTGGAAGGTGCACTTGTATAATAGTGAAGGAAGCTGCACCTCAAGGGTTTGGGTTTGGGTTTGGGTTTGGGTTTGGTGGTGGTGGTGGTTCACTTTACTCTTTGTATACCAATGTAGGTTCACTTGTCTCTTTTGCTAGCTTTATTTTCTCTATGTTTATTACTTGATTATAGTCCTTGCAGAATTAGAGAGATACATTGAGATTCTTGATTACATTATGTTCCCATTAGTGCAGTGCAGCTATAGAGGATCCTACAACTCCAACGTAGATATGTTTTCTTTTTATAGGACAAAATTTGAAGAATGTATATATATGTATGCTTCGTTTGTTGGGTAAATTACTACTAGTAGAGTAGTAGGCATATTGATATTGATTGATACTGGCTCTAATTTAGATTAGCAAAAAATGTGAATTTTCTTCGCTTTTAATTATTTTATTATTTATATCTTACCAGAGTTACAATGTGGCGGATTCATGACTCACCGATATGGGATATAGACACTTTGACACTTGAATATTGTACTGTGTGTGACACGAGTAGAGATGTTTGAACTTTGAAGTAGATTAGTGTCTCCCATTTGCGTCTCTTGTAGTTGTAGGAGTCGTGGCGGATTCATGACTCACCGATATGGATATAGACACTTTGACACTTGAATATTGTACTGTGTGTGACACGAGTAGAGATGTTTGAACTTTGAAGTAGATTAGTGTCTCCCATTTGCGTCTCTTGTAGTTGTAGGAGTCCTACAAAGTATTAACCACATCAGAGGTACTAACCCTTAAATAACTTGTTTTGGCTTGTAATTAATTTAGGAGGGTGAAGGCAGGCAGAATAGAAAACTGGGTGTTGCTTACCATAAACGACATAGGGGACGTTCTTTATTCATCATAGCCCAGAACTGGAAGGGTATATTGTCTACATCAGATGACAGCTTCATTGGTGTAGTAACAGCAAACCTCATGGGTTCAAGATACTATATCTGGAATAAGGTAAAACTATTAAACTAGTACCATGTAGAAAATATAGTAGTAAACAGCAACACAGGATTAAACTGAAAATGTGAGTTCCTTCCTGTATCATAGGGCCGGTCTCCCAAGACACCTGCTGACAGGTCAAGATTGCTTCAGGCCATTGTTGAGTAAGCGTCCCTAGCTATGATCATGATCCTTGTTTAGTTATAACTTATATGCCTTTAATTAATTACATTAATTAAATTTGATATCGGTACAGATTTACGCCCACAATAGCTACCTGGACAGGGAGGCACAGAAGTCTTAGAGCGTGGATTTCAAAGAAGCAGCAGCCTCAGTCCATACACTCAAAGAAAACTACAAATAATCAGGTAGCTATTCAGATTTCAGATGATACCAAACAATTACAAACTACTTGATATTATTCTCATATTTACTGCTACATGCAGGATATGAAGGTCCTTCCATCAGAGTGGGAGGGGAAGTTGGGCCAAGATCAAGTTCATCACCTTTTATCAAGAGTTCCACATTATAACAAGGTCCATTCAATCCCTTTATCATTTTTCTTCTAATTTTACCATTTTTTTGTCCTTACTAAACTTTTATCATCTTCAGACTTCAAAGCAATATGAACTCGATTTCAGAGAAAAGCTCAGAGCTGGCCTTAGAATCCAGAGCTCAGTTAAGAACTTCCAGCTTACTATGGAGGTAAGATTAACATAATAAGGACGCTCAACCCATTCAAGTCATTTTCGTAATATGGTGTTAGTTTTAAAAATTATTGACAAACTAACGCGCCATTATACTAACAAAGGATTACAACTTGTAGTAAATAAAATTAATGACATCTTTTGTAGGGAAACGGAGGACAAACCATCCTGCAGCTTGGGAGAGTGGGCAAGTCAAAATATGTACTGGATTTTAGGTAATTAAGCCAATTATCTTTTGTGAAACTTAGCTTTTTGACATGATTGGGAGGTTAACTTATGCCCAAATCTTTAATGCAACAGGCATCCACTGACTGGATACCAAGCATTCTGCATATGTTTAGGTTCAATCGATCCAAAACTTTGTTGTACACTCTGAAAATCATACCATTTCCAAGTTCAAGCTCTGGGGAATGTAATCTGCCAATATGTGATTTTGAGGTTACTTGTTCCATATGTATTACTTAGAAGTAAGTATCTGAATTGATATGCTTTAGTTGGAAAATCATGCAGCTTTTGTAACAGAACATTCACATATCGTGAAACATATTTCTTATTTCACTAAGCTACCAATTGTTCTGCTTTTTCACCCTCCGG ACAGCTATCTTAATGACAACGAAACCCAAGACAAAAAGAGAGATACTCCCTATACGAATCAGACACTACTCTGTTCCATTTTTGTGGGCCCTCTTCTCCACAACTTCTCTAATTCTATAACTCAGTCCAAATATTCTGAAGAATTCACCTCATTTATTTTTGTTCTTTCCCAAATTCCACCAATTTTCTTACATGAAGAACAGCACTTAACATTAAAATTTCCCCAAAATAAAAATTCACCAGTTTTATCCCACAAAATGGCTGGATTGAAGAAAACGTCAATTTTACGGCAATCTTCGTATAATTCACTTTACACAAATCCCCTCATTGATCCGAGTAACAATGATGATGTTGATGATAATGTGAATGTTATTCCTGTTTGTTTTAAAAACAACAACATTTTGAGTGGTAAAGAAAATAATCCCATGTCGAGGACAAAGAAAGTTTCAAAGTTTGTTGATAAAAAGGAGAAATTAGTAGCAAATATAAGTGAATATTGTAGTAAGAAGCAATACCATTACCCAGATGGGAAATCAATGCAGAATAGTAAAGAAAGGGCATTGAAGGCTTCTTCTCTTCAATTGTGTATTCAACTGAATGAGCCGGACTCGAGTTTCGGTTTTGGTTTGGGTTTTAAGGTATGGGATGCTATTGAGGAGACGGAGAGCGCGAAATCGGTGAATATGTGGGATTATTCTGACTCTGAGGCTGCTCCAGCTTCTTCTTGGTCGACTTTGCCTAATAGGGCTTTGTTATGTAGACCGTTGCCAATGGATGTTGGAAGGTGCACTTGTATAATAGTGAAGGAAGCTGCACCTCAAGGGTTTGGGTTTGGGTTTGGGTTTGGGTTTGGTGGTGGTGGTGGTTCACTTTACTCTTTGTATACCAATGAGGGTGAAGGCAGGCAGAATAGAAAACTGGGTGTTGCTTACCATAAACGACATAGGGGACGTTCTTTATTCATCATAGCCCAGAACTGGAAGGGTATATTGTCTACATCAGATGACAGCTTCATTGGTGTAGTAACAGCAAACCTCATGGGTTCAAGATACTATATCTGGAATAAGGGCCGGTCTCCCAAGACACCTGCTGACAGGTCAAGATTGCTTCAGGCCATTGTTGAATTTACGCCCACAATAGCTACCTGGACAGGGAGGCACAGAAGTCTTAGAGCGTGGATTTCAAAGAAGCAGCAGCCTCAGTCCATACACTCAAAGAAAACTACAAATAATCAGGATATGAAGGTCCTTCCATCAGAGTGGGAGGGGAAGTTGGGCCAAGATCAAGTTCATCACCTTTTATCAAGAGTTCCACATTATAACAAGACTTCAAAGCAATATGAACTCGATTTCAGAGAAAAGCTCAGAGCTGGCCTTAGAATCCAGAGCTCAGTTAAGAACTTCCAGCTTACTATGGAGGGAAACGGAGGACAAACCATCCTGCAGCTTGGGAGAGTGGGCAAGTCAAAATATGTACTGGATTTTAGGCATCCACTGACTGGATACCAAGCATTCTGCATATGTTTAGGTTCAATCGATCCAAAACTTTGTTGTACACTCTGAAAATCATACCATTTCCAAGTTCAAGCTCTGGGGAATGTAATCTGCCAATATGTGATTTTGAGGTTACTTGTTCCATATGTATTACTTAGAAGTAAGTATCTGAATTGATATGCTTTAGTTGGAAAATCATGCAGCTTTTGTAACAGAACATTCACATATCGTGAAACATATTTCTTATTTCACTAAGCTACCAATTGTTCTGCTTTTTCACCCTCCGG ATGGCTGGATTGAAGAAAACGTCAATTTTACGGCAATCTTCGTATAATTCACTTTACACAAATCCCCTCATTGATCCGAGTAACAATGATGATGTTGATGATAATGTGAATGTTATTCCTGTTTGTTTTAAAAACAACAACATTTTGAGTGGTAAAGAAAATAATCCCATGTCGAGGACAAAGAAAGTTTCAAAGTTTGTTGATAAAAAGGAGAAATTAGTAGCAAATATAAGTGAATATTGTAGTAAGAAGCAATACCATTACCCAGATGGGAAATCAATGCAGAATAGTAAAGAAAGGGCATTGAAGGCTTCTTCTCTTCAATTGTGTATTCAACTGAATGAGCCGGACTCGAGTTTCGGTTTTGGTTTGGGTTTTAAGGTATGGGATGCTATTGAGGAGACGGAGAGCGCGAAATCGGTGAATATGTGGGATTATTCTGACTCTGAGGCTGCTCCAGCTTCTTCTTGGTCGACTTTGCCTAATAGGGCTTTGTTATGTAGACCGTTGCCAATGGATGTTGGAAGGTGCACTTGTATAATAGTGAAGGAAGCTGCACCTCAAGGGTTTGGGTTTGGGTTTGGGTTTGGGTTTGGTGGTGGTGGTGGTTCACTTTACTCTTTGTATACCAATGAGGGTGAAGGCAGGCAGAATAGAAAACTGGGTGTTGCTTACCATAAACGACATAGGGGACGTTCTTTATTCATCATAGCCCAGAACTGGAAGGGTATATTGTCTACATCAGATGACAGCTTCATTGGTGTAGTAACAGCAAACCTCATGGGTTCAAGATACTATATCTGGAATAAGGGCCGGTCTCCCAAGACACCTGCTGACAGGTCAAGATTGCTTCAGGCCATTGTTGAATTTACGCCCACAATAGCTACCTGGACAGGGAGGCACAGAAGTCTTAGAGCGTGGATTTCAAAGAAGCAGCAGCCTCAGTCCATACACTCAAAGAAAACTACAAATAATCAGGATATGAAGGTCCTTCCATCAGAGTGGGAGGGGAAGTTGGGCCAAGATCAAGTTCATCACCTTTTATCAAGAGTTCCACATTATAACAAGACTTCAAAGCAATATGAACTCGATTTCAGAGAAAAGCTCAGAGCTGGCCTTAGAATCCAGAGCTCAGTTAAGAACTTCCAGCTTACTATGGAGGGAAACGGAGGACAAACCATCCTGCAGCTTGGGAGAGTGGGCAAGTCAAAATATGTACTGGATTTTAGGCATCCACTGACTGGATACCAAGCATTCTGCATATGTTTAGGTTCAATCGATCCAAAACTTTGTTGTACACTCTGA MAGLKKTSILRQSSYNSLYTNPLIDPSNNDDVDDNVNVIPVCFKNNNILSGKENNPMSRTKKVSKFVDKKEKLVANISEYCSKKQYHYPDGKSMQNSKERALKASSLQLCIQLNEPDSSFGFGLGFKVWDAIEETESAKSVNMWDYSDSEAAPASSWSTLPNRALLCRPLPMDVGRCTCIIVKEAAPQGFGFGFGFGFGGGGGSLYSLYTNEGEGRQNRKLGVAYHKRHRGRSLFIIAQNWKGILSTSDDSFIGVVTANLMGSRYYIWNKGRSPKTPADRSRLLQAIVEFTPTIATWTGRHRSLRAWISKKQQPQSIHSKKTTNNQDMKVLPSEWEGKLGQDQVHHLLSRVPHYNKTSKQYELDFREKLRAGLRIQSSVKNFQLTMEGNGGQTILQLGRVGKSKYVLDFRHPLTGYQAFCICLGSIDPKLCCTL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04735.1 vs. NCBI nr
Match: gi|902161658|gb|KNA06588.1| (hypothetical protein SOVF_179600 [Spinacia oleracea]) HSP 1 Score: 881.7 bits (2277), Expect = 5.200e-253 Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1
BLAST of Spo04735.1 vs. NCBI nr
Match: gi|731352028|ref|XP_010687326.1| (PREDICTED: tubby-like protein 8 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 630.6 bits (1625), Expect = 2.100e-177 Identity = 333/446 (74.66%), Postives = 363/446 (81.39%), Query Frame = 1
BLAST of Spo04735.1 vs. NCBI nr
Match: gi|645245376|ref|XP_008228851.1| (PREDICTED: tubby-like protein 8 [Prunus mume]) HSP 1 Score: 458.0 bits (1177), Expect = 1.900e-125 Identity = 254/442 (57.47%), Postives = 316/442 (71.49%), Query Frame = 1
BLAST of Spo04735.1 vs. NCBI nr
Match: gi|747054074|ref|XP_011073226.1| (PREDICTED: tubby-like protein 8 [Sesamum indicum]) HSP 1 Score: 448.7 bits (1153), Expect = 1.100e-122 Identity = 242/438 (55.25%), Postives = 313/438 (71.46%), Query Frame = 1
BLAST of Spo04735.1 vs. NCBI nr
Match: gi|720040039|ref|XP_010268475.1| (PREDICTED: tubby-like protein 8 [Nelumbo nucifera]) HSP 1 Score: 446.0 bits (1146), Expect = 7.300e-122 Identity = 248/442 (56.11%), Postives = 305/442 (69.00%), Query Frame = 1
BLAST of Spo04735.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIQ5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_179600 PE=3 SV=1) HSP 1 Score: 881.7 bits (2277), Expect = 3.600e-253 Identity = 434/434 (100.00%), Postives = 434/434 (100.00%), Query Frame = 1
BLAST of Spo04735.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ELE7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g189410 PE=3 SV=1) HSP 1 Score: 630.6 bits (1625), Expect = 1.500e-177 Identity = 333/446 (74.66%), Postives = 363/446 (81.39%), Query Frame = 1
BLAST of Spo04735.1 vs. UniProtKB/TrEMBL
Match: B9GLP7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s03290g PE=3 SV=1) HSP 1 Score: 434.9 bits (1117), Expect = 1.200e-118 Identity = 240/438 (54.79%), Postives = 301/438 (68.72%), Query Frame = 1
BLAST of Spo04735.1 vs. UniProtKB/TrEMBL
Match: D7T428_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0018g01630 PE=3 SV=1) HSP 1 Score: 431.0 bits (1107), Expect = 1.700e-117 Identity = 221/347 (63.69%), Postives = 265/347 (76.37%), Query Frame = 1
BLAST of Spo04735.1 vs. UniProtKB/TrEMBL
Match: A0A061GGL2_THECC (Tubby like protein 8 isoform 1 OS=Theobroma cacao GN=TCM_027570 PE=3 SV=1) HSP 1 Score: 430.6 bits (1106), Expect = 2.200e-117 Identity = 233/442 (52.71%), Postives = 296/442 (66.97%), Query Frame = 1
BLAST of Spo04735.1 vs. ExPASy Swiss-Prot
Match: TLP8_ARATH (Tubby-like protein 8 OS=Arabidopsis thaliana GN=TULP8 PE=2 SV=1) HSP 1 Score: 363.2 bits (931), Expect = 3.900e-99 Identity = 198/411 (48.18%), Postives = 272/411 (66.18%), Query Frame = 1
BLAST of Spo04735.1 vs. ExPASy Swiss-Prot
Match: TLP4_ORYSJ (Tubby-like protein 4 OS=Oryza sativa subsp. japonica GN=TULP4 PE=3 SV=2) HSP 1 Score: 332.8 bits (852), Expect = 5.600e-90 Identity = 173/302 (57.28%), Postives = 212/302 (70.20%), Query Frame = 1
BLAST of Spo04735.1 vs. ExPASy Swiss-Prot
Match: TULP1_MOUSE (Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 2.700e-15 Identity = 60/214 (28.04%), Postives = 103/214 (48.13%), Query Frame = 1
BLAST of Spo04735.1 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=1 SV=3) HSP 1 Score: 74.7 bits (182), Expect = 2.800e-12 Identity = 67/240 (27.92%), Postives = 117/240 (48.75%), Query Frame = 1
BLAST of Spo04735.1 vs. ExPASy Swiss-Prot
Match: TULP4_HUMAN (Tubby-related protein 4 OS=Homo sapiens GN=TULP4 PE=1 SV=2) HSP 1 Score: 67.8 bits (164), Expect = 3.400e-10 Identity = 34/96 (35.42%), Postives = 59/96 (61.46%), Query Frame = 1
BLAST of Spo04735.1 vs. TAIR (Arabidopsis)
Match: AT1G16070.2 (tubby like protein 8) HSP 1 Score: 359.8 bits (922), Expect = 2.400e-99 Identity = 198/412 (48.06%), Postives = 273/412 (66.26%), Query Frame = 1
BLAST of Spo04735.1 vs. TAIR (Arabidopsis)
Match: AT1G76900.1 (tubby like protein 1) HSP 1 Score: 62.0 bits (149), Expect = 1.000e-9 Identity = 42/122 (34.43%), Postives = 59/122 (48.36%), Query Frame = 1
BLAST of Spo04735.1 vs. TAIR (Arabidopsis)
Match: AT1G25280.1 (tubby like protein 10) HSP 1 Score: 61.6 bits (148), Expect = 1.400e-9 Identity = 36/106 (33.96%), Postives = 56/106 (52.83%), Query Frame = 1
BLAST of Spo04735.1 vs. TAIR (Arabidopsis)
Match: AT2G47900.3 (tubby like protein 3) HSP 1 Score: 61.2 bits (147), Expect = 1.800e-9 Identity = 34/109 (31.19%), Postives = 58/109 (53.21%), Query Frame = 1
BLAST of Spo04735.1 vs. TAIR (Arabidopsis)
Match: AT3G06380.1 (tubby-like protein 9) HSP 1 Score: 59.3 bits (142), Expect = 6.800e-9 Identity = 31/92 (33.70%), Postives = 54/92 (58.70%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04735.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04735.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04735.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo04735.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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