Spo04942 (gene) | SpinachBase

Overview


Name	Spo04942
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	MADS-box transcription factor
Location	chr1 : 48094463 .. 48109909 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAAGAACGAAATTGCAACATCAATGTCTTTCCTTCCCGGGTAAGTATTGTGTTTCTACTTTCTACATACTGACGTAGCTACATACGACCCCCGCTCTCTTTTACTAGTACAAATATCTCTAGTAAAGAAAATACAAATAAAATAAAACTGGAAAATATTAAAATATCTCTGATTATAGATTAAAAAAAAAATGTAAAAAAAAAAGTACGAGAATTGCGCCAGCTTACAGCGTGATCTGGATCATGTTATGTGGTACACGAAATACGGGGTAGCACCACTGTACTACTGTAGGATATTTTGCATGAAGTTAAGAGAAAGCATGAACTGACTGCTATAAGAGTTAAAATTAAAGAAGATACTCAAACGATGATATTTTCCTTTTCTAGTTTTGTTTCTAACTACAGTTAACCTTTAATTTTATATGATATACTTTTATCATTAATATTTTTATAAGATGTCAAAAATATAATAAATAAATAAGCAATGCAAAAAAAAAAAAAAAAACAATCCAAAAACGTTGGATATTGCATGTATTAAGAAATATCATCCTATAATAGGCACAATAGAAGTACTCCTTCGGTTTTTTAATGTCCCTTTTGGAATTGAAGGCAGTCTAACAAAAGTAAAATTGTCACATGAATTTCAATAGAATATAACCCATGTGGGTATGAGAGAAATAATTAAGGGGTTTATGAGGATAAAAGTTTATTTGAAAGTAAATAAATTGGCTTTTGGGATGTTTATAGGGATATAAAGGGGATAAATGTTAGACAAATAAGAAAATATTCTAAAAGAGACTAATAAAAAAGAACAACTCAATTTAGAAAGGGAACTAGCATTCAAGAACAGGGGGAGTCATTTGTTATCCATTTTCTATCAAGCTAAAAAGACAAAGAAATGCGGACTAGCTAGTTGTAAGCTCGTAATACTATCACACGTACTATATAAGGTGAATCCTCTCACATTTCTCTCTTACATGTGTGAAACGCTTGGTGATAGCTCAAGCAAAATTAAGCTGGATAACTTTGATTGGTGTTGGTTAAGTAGTGTCTTTTTTTCTTATTTTGTTAAAAAAAAACATTTCCTCTTACCTGTGTAAGCCACGAGAGGAGAAAACGTGAAATTGTCCAATACGAAATATAAAAACACATATTCGGTGCACCTAATTTTAGGCACACCCAATTATATCTAAGCGCTAATACTACGGAGTAACTACTAAGGGAGCACTTCTTCCCCTGAAATCTCATAAACTTTTTTGAACTCAATAACCTTGATTTAACCTGATCAAATGCATCTAGTAATGGCCATGCCAAAAATGCATTCAATCATGATGGGCCGAACCAAAACATCAGACCTTTTTTGTGCGCTGTTTTGGGCTAAAAATAGCGGATTTTGGTGAAACTGGGTCAAATTTGCGCACAAATTAATCATTTATGGGGTCAAGCCAGTTAAGCTAGCTCCATATAATTAGATCTATAAAACTAAAAAAGTAATTAAACTTAAGTAAACTTTTAAAATTGATTAACTTATACTCTGTGTGAACATAATAAATTAGAACGGAATAATTATTTGTTCATGTTTTTTTTTCCAAACGAAGAGAATGCACCTACCAATTATAGACAGAAAAAATGAAGTCCAACAATAGTAAAAATATCCAAAACACGCAATTACTAAAAATGGAAAAAGATAAATAGTGTAACGATAATCCGCAACGTCCACTAGTAAGTAGACTCCACAGCCTAAAGAAACACGTGTAATTTACTATTTAATAAAAATTCGTCCAACTAAAAAAAAATTATGTCCCTCTCCAATTATGTGTGGCAAAATTAACCCCTTTCTCTCTCTAAGTTTTCTCTCTCTCCTTCTATATTGGGTTTTCTCCTCCGCCCTATTTCAGACACAACTTGACTCCTCAGTCACTCCTGAGAGTATCTATATTCAATTTCCAGAGAGAGAAAGTAAGATCGCCACAACCTACAAACAAAAACAAGATAAGGATGGGAAGAAGGAAGATAGAGATGAAGCGAATTGAAGATAAAAGCAGTCGTCAGGTCACTTTCTCTAAGCGCCGTTCTGGTCTCATCAAGAAGGCTCGCGAACTCTCTATCCTTTGCGATGTTGATGTTGCTGTTCTCGTCTTCTCCAATCGCGGTCGCCTCTACGAGTTCGTCAGCGGTGCTTCGTCTTCTTCCAGGTTCATTTTCTCTCTCTTCATATGTCTCTTCCATTCAATAACTGAGTACTTGATTTTTGTGTTTCCGAATATTTTTTTGCGCCATTGTCCGTACGATTGGAGTAAGGTTTTTTGAATTTTTGTCGGTTTTGAGCTCGATCGGTGCGATTTTCGATTTTCTGCAACGATTTCTTCATCCGATAGTGTTTTCTCACCTTGAAAATAAGAAATGCGACGATTTTAATGCTTAATTTTTACGGAACTTCAATTTGAATTTTATTTTTGCTAAAATTGTCATGAAATTATGAGGCGGTGCTTCTAATTTTATTTTATTTATTTTTTTATTAAAAAAAGAATTTACGCTTTGGAGTAGTGTAACTGTAATGATTATGAATTTTATTTTAATATTATCCGGAGTATTCTCTTTTGATTATTGAAGGTTTAATTTCTGCTTTATAGAGGTTGACTAGTTTGTTTTAGCTTCTGCCTTCACGTGATTGTTTATTTATTGTATTATCCGTTATTTTGTTTTGTTTTTGCTCTTAATTTAGTGGTTAGTGGAATATTTAACTATTTTCGGAGTGATGATTAGGACCGTAAGCTTCGTTTTACTATAAATAGTAGTGTGTTAAACTTTCTTTTTATAGTAGCAAAGGGCAGGAAGCATCTATTTATGAAATTCACTTATTTTTTAAGATCAGTAAGCTGTTTTGATTAGTAAGGCATAATGATATTTTATCTTTGTTGTCGTTGAATAACTACTGCGTATCACTCTCGTAGCTTTTGATTTTAGAACAATTACAGAAGGGGAAGGAGTATATTCTCAAGTCCTCCGTATATACACTTATGCAGTGGTTAGGTGATTATTATACTGTTCCAATTGAGGTTTAACATGGGCACATAACATGAGGCAGAGGCGTAGAGGGATCTTTTTCTATTTTTAGAAGTTTACTCTGTATTTTACTATATCTAGCTAGTAGTGTAAACTTTCCAGATATAGAAACGGTCGGCAGATATTTTGAGGTGCACTTTATATGGCCTTATTTTAATACTCTACTAATATTTCGAGACTACTAGTACATGATGTACCTCTATTTGGAAAAACTTTAGTGTGTTTATAGCCGTGAATTGTGTTATGTGGAGCATAAATAAATTTAATAGCCTAATAGAGGTGATTTTTAACGTGTAGTGTAATAAGTGAGCCCAACTGTATCCACTTGTTAGACACTTAGACATGTAGCTCTTCTTAGTCCATGTGTCTTGCCAATGTTTTATCTTCTTAGTTAAGATAACAACTATCACTATAGGCACATAACATGTTCGTCATTATACTAATTTTTATTGTCACTTGTGTAAAGGTCGTGTCCAGTGCACAAAACTTTTGCTATTTAGTAAAGGTCGTGTCCTGTGCACAAAACTTTTGCTATTTAGTGAACACATAGTCTTAGGAAGGAAAAAGTGTTGCCACATGTGTATCAGAGTATAAAAAGGCGCAGAAAGGCCAACATGAGGCGGCGGAGCGCAAGGTTTTGGAGCCTGCGTTTTTCGTGTTACGGGGGAGGTGATTTCAACGAGGCGCAACTAAGGCGCTCTCCTTGAGACGTAAACCATTTTTTCACCGTTATCTTTTATTATTTACTAGGTGAGCCTTATTTCAGCGAGCCACACACCGAGGGGAAAAAAGGCACGCCTAAGGCGCAAATAACCTTAATCACCCTTAATGGCCTGGGTGTCCCTTCATCTTTTTAATACATTATTGTGTATATCAATAAATTTAGCGACTTTAAGGACAAGGCTTTTAGGACAAGGCTTTGTTGTTGTTGATGATCTCTTATGTCGATTCATGTCAGCTGACCCAAATCACTTTGGGACCAAGGCTTTGTTGTACTTGTTGTAAGGACATGAAGGGATAAGAACATACAAACCGTCCTAAGTGATAGGAATTCTATTTTATTGATATTTGATCGTCTTTCTCGTACAAGAGCCGCATGATTGATTTGTGTTTATATCAAAGATTCCTCTATTCGAGATATTTAGGCTTATTCATTTTACATTCCTTCTTAATTCGATCCTCCTAATAGCAATATTTTATAGGATATTCCTTTTGACCTTAGAGGTACACTATAATCACACGGGTTCTCTCCGTTTTGACATAGTCCGACTCTTTTACTATTTATTGGGTGCGCCTTATTCCAATCAAGGATGCACAAAGTGCACGCGTAAGGCACAGAGAACCCTAATCGTCTAGGTGTCCCTTCAGCCGTTTTATACAAATATGGCTTTCAGGTTAAAGGGATATTATACCATTCGTCCCGTGTTAGGAATCTATTTATTGATATTTGATTGTGTTTCTCACACAAGAGCCAAATGGTTGATTTGTGTTTATATCGCGATCAATTCAAAGATTCCTCTATTCGAGATAGCAGAATCGAAATATAGAAGAACCAACACTTAAAGGGCGAGAAGTTCCGACCACTGATCCCTCCTCATCGCTTTGGGCTTATTCATTTTACATTCCTTCTTAATTCGATCCTCCTAATAGCAATATTTTATAGGATATTCCTTTTGACCTTAGAGGTACACTATAATCACACGGGTTCTCTCCGTTTTGACATACCGACTCTTTTACTATTTATTGGGTGCGCCTTATTCCAATCAAGGATGCACAAAGTGCACGCGTAAGGCACAGAGAACCCTAATTGTCTAGGTGTCCCTTCAGCCGTTTTATACAAATGTGGCTTTTAGGTTAAGGGGATATTATACCATCCGTCCCGTTTTAGGAATCTATTTATTGATATTTGATTGTGTTTCTCACACAAGAGCCAAATGGTTGATTTGTGTTTATATCGCGATCAATTCAAAGGTTCCTCTGTTTGAGATAGCCGGACATCAATGACGAGATATGTAGTGGTCGCTATCTCCTTATCTCTTACATATTGGCTTTAGGTGTTCAGAACATTTGAGACAAGTGTTTTATAGTTTTGACCCTGTGCATGCCAAGTTATCGACTAGCTATTGGTGAAGTCTCGAGGAACTAGTACCATGATCAAATCCTACCTGTTGGTGAAATCTCGAGTAACGGGTACCATGATCGAATCTTGTCACCTCATTTGTTGGCTTGTTCTTTGTGCTTCTCTCCACAACCATCAAAAATACTTCTACAACATCAAATTAACACCCTTGATTTGCCTCTTTATCTTCTCAACCTACATTTTACGCTTTGTAACATTGAATAAAACTATTAGTGCTACCTCTGCCTATTTTTAAGTCTTACAAATTTACTCTTACATAAAATACATTTGGTCCCATCAGTTTTGCCTCAACCAAAATGGCAAGGGGTATATAATTGTGAACGGAGCAAGTATCAACACACTGAACCTAGTTTAAGCAAACACACATTCCTTGTAATCTCTTGTATAGAAATCTCTTGTATAAAAACCTTGAGAGAGATCATAGATGTTAAAACTTTAAACATTCTGATCAGGCTTTGATGTCACTGTTATTATTGTTTAGACTTTAACATAAAAGTTCTTGTCCAAAACTACAAAACTGTCAGTCGCTAGTTTTTTTTCTCCTGTGAAAGTTTACCAAGCCATATATGCGCTATTAGTCTTTAGTATTCCCTTTTTATTTGCATTTATGTAGTTTTTGTTGGTTCCATTATAAATTCAAGGTGCTTTATTCTTTTGATGTGACATGAACTGAAACTGGATTTCCTTGATGGTGGGGCTTGTATGTTTCTTAAAGTATAGGGAGTTGTTTTATTACTTTTAAATGTGACATGAATATAAACTTGATTTCCTTAATGTGAAGTTCATGATGGGCTTGTTTGTTGTTTGTCTGAGAAGCGCAACAATCATATACATTTTCGATTTCACTAGAAGGACAAGGAGGAGAAAGAATTGCAAATGGTATAGAGGAGTGTATTCAAGACGCGTAAAAACTACTAAAAAAGGAAATACACATTGAGTTTCCTTTTCAGCATGGTAGTTAAGTTTTGGAGATTTCTGTACACACTGTGATATACTTCATTTCCGAACTATCTTGTAAGAATTAGTCTTTTAAGTGTTAGATCAACAAGGTTATTATGTTATGAAAAATGATTTTACATTTAGTTCCCTTTTTATGATGGTTGTTAACTTGTGGAGTTTTTTTAATACCATATTGTTGACTCCATAAAAATTCTTTGTTTCCCTACGCACGAATATAATCTTTTCATGTTTTTATACCTTTGCTACACCATAATGAAATAACTTAACATCAAGAAAGTGTACAAACAGTAAATTGATAAATTATAATTTATTCTTCTACACATGAGATTTCACCATTTTTAATTACTTAAATATTTCATAAATTGAACAAGAAGGCTCAAATTTTGAATCTTACAAGGTTGATTTTTACTCATCATGCTAAATTCCTAATTGCAATCCTCTTTTGTTATTGTGGCAAGTAATATGCAGTAATATACATAAAAACCCTGCAAGGCATTAGACATGATAAAAAATTCAATAGCTGGAGTTATTTATTCTAAAATTTTCTTTTCGGGAGTCAATTCACAAGTTAAGAATGAGTTAAATGACTTTAGAGCTAAATCATATGGTCTTTGGTCTCTCAACCACGGTTGCAATCTAATACGGAGTAGTATGTTTGTAGTCATATAAAATAAATAAAATAAAAACACGTATAAAAAACCCCGTATATTTGTACAAAAACGTGTTATGTAGGTTTAACCAAGTTTTGTTGGTGAAAATGGTGGAAAACTCACTTTGTGACGTGAATGCTAAAAGTTCAAACCTCACCATCTGCTTGTGCTTGGAGTGGGAATCTCTTACCCCCCCTTGCTCTCAAGTGTTGATTTACGTAACTAAACTATTTGACTTGTGATAAGTGCTCATTAAAATTGAATCTTACCAATCAATAATAATAATAAAAAAAAAATAAGGCCACTTTTAACATTCCAAGCTATTATTAACACTGTGTAATGAATGGTTTTTCTACAACATATTTCTCACCATAGACAGAGTTAGTTAACTATGTTAACTATTTCAAACATGAATTAGATGACCTTGTTGAACAAAACAAAGCATTGCAATGTTCTTATCAAAATATATTGAGTATTGAAATACCATAACTCTTTCTTAAATTAAGGGCTAAATAAACACCTTCTTGACGACATTTTACGTAGCTCATTGTTCTCCTCCTAAACTTGCAAAACGCAAGAGCATTTTTAAGACCATCGAAATGAAGATTATGATGTTGTCCTAGTTATTCACATTTTAAGATTCCAATGTACTCTCTCTTTCCTTTGCATCCAATTGACATGCTCGTGTCCAAGTGGTGTGAACCCCATAAGAACGAGGACAACTCCTTACAACCTTAGCTACTCTTTAACATGCAAATAAATTGGTCTTTCCTCTCTTTATAAAATACGGTCCTTTCTCTCTTTGTAAAATAATCGCTACACAAGATAGGAATTTAGACCCTCACCAAAGTGGCATCTACTTATTACTTACAATTTTAGGTAACTTTTTCTTCTCGCCCTATGAAATCTTCCTTGTTAACATTTTCTTTTTTCAATGCACTAAAGGGGTACCATTTTGATTTAGTCCATTACATCTAACAGCCAAAAGAAAATGAATCTTTGGCTCCATTGGGAAATGACTCCTAATACCTCTTCACTTCCTTCCCATGAAGTAGAAGACTGTTGTCCCATTAACGTCCCGTTATCTCTTTTGGATCAATTGGAAACAACCTCTCTGCAATTGCAGGGGTAAGATTGCGTACGTTCGACCCCCTTACCCTGCTTCTTGCGGGATCCTCTTTGAGGCAATGGGGTAATGATAATGATAATGGTGAATGCACTAAAGGGGAAATCCTCTTGTATGTTATGTTTAGACCACTTAAGTTGCAAATAATAGGTTCCATTTCTTAAATGACTTTTCAAGAAAGTGCTTTGCTTCACTATGTTTGTTCTACAATTTATTTTCTTGTTTTGGATGAGTTTCTTGTTATTCTAAGAAATATTTAGCATTTTCACTATTACTTAAGTTGCAAATAATAGGTTCCATTTCTTAAATGACTTTTCAAGAAAGTGCTTTGCTTACTATGTTTGTTCTACAATTTATTTTCTTGTTTTGGATGAGTTTCTTGTCATTCTAAGAAATATTTAGCATTTTCACTATTTTTGCTCTTCTGTTTCTTTTCTTGGTTTTTGGATGTATAATTCATTGATCGAGTCAACTACATGTTTTTTTACTCAAAGAAGAGGAATTAGGTTGTAAACAGAGATTTAGGAGTATGTTGTCCATTATGTTCAAATAAGGTTCCACATAATCTCCATCCTCAAGTGTGAGGATCTCTCTCAATTCCTATGGGAATATGAACTCCTTTCCTCTCTGCAACTCTCATAAGTTTTTCTCGATTATCTTTTGTACCTAAACAGAACTTTCAGCTAGTTCTTTTCCTAAGAGGTATTCTTCCTTGCTATATAATCAAAAGCTCACTCTATCATGTCATGTCAGATCTCGTGTGACTGTGTGTATCTTCTCATTCTTAAATGGTTTGCATTATCACCTTACGTTAATCTCCATCCTCAAGTGTGAGGATCTCTCTCAATTCCTATGTGAATATGAACTTTCTTCTCTTCTACTCTCATAAGTTCTTCTCGATTATCTTTTGGACCCAAACAAAACTCTCTTATAGTCGTTAGCGCTAGGAATAGCGCACACCCGACATAAGAGAAAGGGCTTTAGCGTCGCTTCGTTCATCCACTAACAAAAAGAGAGATTTTCCGTTTTGCGTTGTGATTATCACATTTCCGTGAAGCTAGTTCTTTACCTAAAAGGTATTCTTCCTTGCTATATAATCAAAAGCTCGCTCCATCATGTCATGTCAGGTCTCGTGTGAACGTGTATATCTTCTCATTCTTAAATGGTTTGCATCATCACCTTACGTTTATCTCTACCTCAAAGGTGTCTTTTTTAAAGGAATACTCGCATTTCTTACAACTATAATTCTCATGTTAGTGTTCGTATCTTATCTCCTACCTTATCCATAAATAGGACCTTAAGGACAATATACTCATAATATGTTCACACAAGATCATAGCTTAGAGACAATATATTTCATGACATGTTCCTCGAACTATGTCAAGAAAAAGAAATATGTTTAATAGGAATGTATCCCATTAGGATGTCAAAACTTATGGTAACACCACTTCATTCTTTCAGAAATCCTGCCCGTTTAACCATGTTTTAGAAATAATCAATCACTTAAGTTTATCCATATCCCATCTTTGAAGTTTTATACTTCAACTTTCTAATATAATGCCTTGTTTTATGCTTAGCTAATTCTAGATACCAAGTTACGATATTCTTAAATAACGAGTTAAAAGAAAATATACATGACTCGTGACTTTATATTATGAATTTTCATCCATACTACCTTCTAGAGGAAGGCCTACTTCTTGTTGGCTAAGAGTTTGCCATAATGTCAAACAACTCAACAAAAACAAGTGAAAGTGCAAACAAGCTAAAACCCACTATATCGAAGACCGTGTCAAAGTTATGTGTGAGTTAGTTCTATCCCAAACACATGCCTTATACTTCATACCCTTGTCGAAACAAGCGCTAAAGAATACAACATGCCACCTCAAATTCATCTCATGTTTCTTGTGTGACAACATATGCCAATTTCAGTCATAAAGAAACCAATATCAAAAAATGCTTCAGAATTCCCAAAAGACTTTACATGCTTATCAATACATAACTTGCACTGTTATTTTTTTGTTACATTCAAATAATTGCATGAAAACATTAAGGTTGCTTGGTACTCATTTCCTTTGACATAGCTTGTGTACATGATTTTAGCCAAAAATAAAATGCCAGAAAGTGCCAACGCGTGCCATGTCAAGGCCAACCCAAATCCTTAAGGAAACAAAGTTAAGAAATATGCATTGAAAATAACCTATAGCAATCATGGAAATAAATAAATCTATTAGAAATGGGAGTACTTGAAAGGAATTCCACTTTATAATCTAAAACCACTGTGTTTTAGTCATTGTTGAACTTTGTCTCCTGGTGATTCTTCTCTAAGACTTGTAGTTTTGATGTTATTATGAAATCAATAAACCTTAAATAATATGAACTCTCAACCATCGTTATTGGTTATGCTTGCACTTCTTTTCATTGTTCACATTCCTTTGCCCTTTATTTGGGCGAGATAAAAGGGAAGGGATAAGAGGAGGAGGAGGAATATCAAACTCCAATTTCCATAAAGTCTATCCCAATTTTAATCTAGTCGTTTTCCCTTCCCCAAACTCTTTTCCAAACAAAAAACTTGTGGTACTTCTCCCCCTTAACCAATTTGGGAGGAAGTTAGATCCTTTTTCCTCCTCCAATGTGTTTTACCAACAAGGAACACTTTCTCCCCCTCCCCCAACCATGATTTTGCTTTCATTATGTCATTCCACTTTATTTGAATAGGAAGTTAAAAGCGAAAGGAAGAGGAGGAAAAATGACAAGAAGAGAGAAAGGTCAACCTTAATTTTTCCTCCAAACCTATCCAATTAGGGAGAAATTTTATCATTTTCCCTCTTCCAGTCTCTTTTCCACACAAGAAAACTTTCTCTGCCCTTTCCCCATCCTCTCCCCTCATCCAATTTGGAAGATTTCAGTTTCTTTTTCTTTTTCCACCTCTTTTCCAAACGAGGAAAGCTGCTCCCCCTCCCACCCCTCCCCTCCTTGGAAGAAATTGATCATATTTCCTCCTCCGGTCTCTTTTTCAAAGAAGTAAACTAGCTCCCCCACCCCCCCTTCCCTTCTATGTTACTTGGACTAGGGTACTATTATCAGATACGGATACATGTCCAAATATACGACTCGTGTACATTGTAAAATTTTACCAAGATTCAAGTCGAAAATAAAGTGACAGAGTGTCGAGTACCCGACACGAGCCCTTGAGATAAAACGAAGAGTCGGAGTAACATGGCTTCCTTCCCTTTCTCATTATTTCCAGTCATACAAACAAAGTGTTAAAATCTCCATGTCATTTGTCACCGTTGAGATCTTGAAGATGTGCAAAACATATATAAGGAAGTAGTATAATAATAGTTATTGTAATTCCTAGCCACTACGAAGTATTCCTTTTGTCTTGATCCAGCTCACTCCTTTGTAACGAGTTTATCATATACTTGTATGTGTAATTGTTAGTTTGCCTTACGAAGTACTTACGTCAGTCGTGAAAGAATGGATCTAGCTCGCATCTGTGTTACGGATTTATCAAGAACTCATACGCATTAAATATTTGCGTGGCTTTTTCATAGCTTTTTTTGTCCAAAGTTCCATGTTCTTTCATATTTGTAAGACGCTCAAGCTTTTAATAATCTTGATTCCCTTGAATTGCGAGTGGCTTCCCCAAAAACAAACATTTCCCCGTATCTAGCGTATTTATTATGCCACCCTCGAGGTAAGCTCCAATATTGATGCTTGGCACAAAGCAAGTGCTCACAACATGAAAAAATAGTGATATTTTTTACTATGCTGTTTTTCAGAGGCGGCCTTGCGATAGAAAACTTACATATTCGGTAGTTTACTTTTTGGGCTCCTTGAACTCTAAAGTTTGCCATACTCGACAGAACACTAGTTATTTTTGTTTATAATCTTCGCAACTTCAACTGTTAGAGCTCAAGTCTGCCCCTTCCATTTGATTTAGAGCACAAGGGCTTACCTATATGTGTGTTTGACTTGCTACAATCATCCTGGTTTAGACAGTAATTTTCCTTCTTCAGTTTGTCTCAGATTCTTAGGCGATATCAAGATTCCACTGATGGAAAAGCATCAAACGTTGATGATGAAACTGAGGTAATGTACTTCACTTATTTTTTCCATGATTATTAGCTTGTACTATGCTCAGGATATTTCCTTCTAGCATTAGAATATTCTATCAGGTATATTTAACCCATTCTGGGTTGTCCTTTCTTTTCCGGCCAGTTTTAGAGTTCTTTGTCATCTTCCTGCTTCGAGTTTTCCACTGATAACAGACTTATCGGAAAGAAAAGGATACAATTCCTTCTATTCTTTGCTGTACAACAGTCATCTCCTTTTCTGACAAGCTCGGTTTTCTTTTGTGTTTGACGGCAGGATTCCCCGTCTACTTGTATACAAGTCCAAACATGCGGCGAGCTAGTGAAAACAGTTGAAAGGCAAGTGATCAAATGTCCATCTGTTTTACTGATTCTGACGATGACGTTTCTGTACTCCACGATTCATGTCTTGCAGGTATGCAGAAGGCTCAGGTATTGAGAATCTTAGTCTAGAGGATTTCATGCAGCTGGAGAAACAACTAAACGATGCCCTTGTACAGACTAGAAACCGAAAGGTTCCCCTCCATTCCTGTTATCCTAATTAATTTCTTGTTACTGGCACTCCGGGCTTAATATAAGTAATTTGTGAACTTCTGTCAAACCAAACAGCCTTTATTTTGCTACTCTTCTTTGGTACCAAATAAAACCTTACCTTACACCTGCTGGTGTTGGGGACTTTAGTCAACTCTCTGCAGACTAGTTTATGGTTTTATTTTTTACTATTTGGTAAGATGAATAAAATGCTCACTGTAAAGTGCAGTGTGCAAAGAGTCCATAGTGCACTGTATCATACATTGCTGAAATATCAGTTAATCATTTGGAAGCTCATCTCTGTCAGCTCATTTTATGTAAGAACTGTCAAATTGATTCTAGCCTGGACAATGCAGCAGTATATCCGTCAGTAGTAGTATATGCAAGTCCGACTGCGGTCAAGTACCTCATGTCGGTAGCGTATAATTTCCCTCAAATAAAATACACACTTAAAAAGCTCATCTTCCTATGAGATTTCAGCCTCACCTCAACTTCCTCACCTCAACTTCCTCACCTCAACTCCTTCTCAATCGCCTATGGATGAAAGAGGGTAGTCTCAACAACGTAGTAGACGCGTTTTGGCTTTTTGACCCTCAAGACCTGGGGAAAAGAGCCAGGAGGCCCAGTAAAACCTTCACTCAGGCAGAATCTTAAACTAGAGACCACATATTTCTTTCTGATATACTGTTGCTAAAAAAGAGTGCTGGAAAAAGATTTCCAGCCCCTGTTATTCACATTTCCCCTCTTATCTGTACAGTCGTTTTCCTTGTTACCAAAATCATCAAAATGTTTCACCAACTTATTTCTGTTGTTCTTACCAGGCTCAGCTTATGCTAGAATCTGTTGCTACACTGCGTGAAAAGGTACACTCTCCCTCATCTAGATTTTGTTACTACTGACAAAATATGTTGGTTGTACACTTCTATTTCAATTGGTTAAATACTTACATTGAATTATTTACGATGCTCCGATCTTGTTAACATTTCAACGGAAAGACCAAGCTGCTCTGCCAGAAAAAAAAGTATAGTCATCTCATTTAATTTACCTGGATCTTTGACTTGAACTTGTATCACTACTATATAAATAAGTAGAAAACATCCGAACTCCTACTATGACTATGTACTTAGTCACACCCACTAGTAAGCATGTGGATCTTATAATGGTTCCGATTGATTTATATGGGTAATGTTCTTTTCATCTATGCTATCCTTTCTTCTCAGCATAAGGTAGATGGGTAGATCTAGTTATTTCAAGGGACACCCTATCAGGAACTTATCTAAACCTCAGTGAACATATGAATTTCATGGAATGGTAGTGGTGGCATGATACATACCAACAGATGCATCATATCTGCTTCTAATTTCACAATCTCGAACTCTACCTTGAAAGTGTACGATGAAACTAGAACCTAAGTCCTAAGGAAATAATCCAAGATTTTGTTCCCATTTTCTGGTTTGTTCTGCTGATACAATAGGATAACTTACTCCAAATTCTCTTGTTCCTGCTGCCTCATGCTACCTAATGCAGGCAGTGCAACCAAAGTAAACAAGTTTGACGTGTTCGGTCGTTTTCTTCCTTTGTTACGTAGACCTGTCTTCAATTTTTCTGCCAAATAAATCTGTATTATGCAAGGAGGTTGTAGACCCTTATAGCTTACAGGACCTGCAGTAACACAGTAATGCAGTAGAAAATTATGTAATGGCATGATTTTTCTGGTCGTTTCAAAGTTCTCTGTTGGTACTTTGTGAGTTTGTGGTGTGTGAAACAACAAAACTCTACAAATCTAGAACTCACACCCCAACTGAATTCGACGCAAGTACACTGAACAAAGTTGATACAGTCAAAAGTACAGAATAGTTTTAGCTCATATGTGTTTCTACTTTCTAACTCTATGTGTAGATGCAATCACTTTGTTGTCCAATCTTTCTATCATTTGCTCTTCATACCAAAACTGGGTTAGGTGGACTATTTTTTTCCTAAAGTAAACATGCTTCTGCTGACCATGTTATAGTTTTCATTTTGGCTTGTTTTATGAATCTGAATCTGGTGATCACTGTTTCTGTAGGAGAAGATGCTGACACAAGAGAATGACCAGTTGAAGGACGAGGTAAATATCAGTTTAAAAAAGGTTAACCTAAGACTCCGTTTGGTTGAGTGTAAACCAATTTGCAATGGAAAACACAATTCCAAAATTAGTTTTTAGTTGTTTGGTTCCACGAAAGAAAAATGAAGTGAGGGGAGTGTACAAGAGAGATAAGAAAAATAAAGGAAAACATTTTTACCTTCACTTTGAAGGAAAATTGGTTTCCCATCATTGTGAGAGCAATTTTACTCCCGAGAAAAATAGTTTTACACTCATTCGCTAACCAAACAATGTAAAATTGAAAATATAGGAAAACTATTTTCCGGGAAAACATTTTACGCTCTACCAAACAAAGCGCAAGAGTTAGAATATTTGTTACTTATGTCTATTGTGTGGTTTACAGGTTGCTAAAGTTAAGGGCAATCTCAACAGGGGAAACCGTACAGATTTAGAGTTGAATGGCGTGATGGAAGAGGGTGCACTTATACAATGCCCTGAGCCAGTGAGAACACTTCCTCTACTTATCGAGGAGGGTGAATGCCCTGAGCCAGTGAAAACACTTCCTCTACTATGGTAGCAAACCAGCAAGCTATTTGAGTCGTGAGGCAAAGCATTGGGAACGTTTTTTTTGCACTGGTCATGCTAACTGGGCTATATCTCTCTATAAGATGAAAGCTCCTTATTTTTCCGATGAGGACTCGCAATCTATTCGTTTCCCTTGTCTCCGATTGTATAACTATGATTGTCTTGTTTATACCTATTTATTAACTACTTGTACTATACTAAACCCGTG

mRNA sequence

ATGGAGAAGAACGAAATTGCAACATCAATGTCTTTCCTTCCCGGACACAACTTGACTCCTCAGTCACTCCTGAGAGTATCTATATTCAATTTCCAGAGAGAGAAAGTAAGATCGCCACAACCTACAAACAAAAACAAGATAAGGATGGGAAGAAGGAAGATAGAGATGAAGCGAATTGAAGATAAAAGCAGTCGTCAGGTCACTTTCTCTAAGCGCCGTTCTGGTCTCATCAAGAAGGCTCGCGAACTCTCTATCCTTTGCGATGTTGATGTTGCTGTTCTCGTCTTCTCCAATCGCGGTCGCCTCTACGAGTTCGTCAGCGGTGCTTCGTCTTCTTCCAGCGCAACAATCATATACATTTTCGATTTCACTAGAAGGACAAGGAGGAGAAAGAATTGCAAATGGTATAGAGGAGTCCAAAAGAAAATGAATCTTTGGCTCCATTGGGAAATGACTCCTAATACCTCTTCACTTCCTTCCCATGAAGTAGAAGACTGTTGTCCCATTAACGTCCCGTTATCTCTTTTGGATCAATTGGAAACAACCTCTCTGCAATTGCAGGGTTTGTCTCAGATTCTTAGGCGATATCAAGATTCCACTGATGGAAAAGCATCAAACGTTGATGATGAAACTGAGGATTCCCCGTCTACTTGTATACAAGTCCAAACATGCGGCGAGCTAGTGAAAACAGTTGAAAGGTATGCAGAAGGCTCAGGTATTGAGAATCTTAGTCTAGAGGATTTCATGCAGCTGGAGAAACAACTAAACGATGCCCTTGTACAGACTAGAAACCGAAAGGCTCAGCTTATGCTAGAATCTGTTGCTACACTGCGTGAAAAGGAGAAGATGCTGACACAAGAGAATGACCAGTTGAAGGACGAGGTTGCTAAAGTTAAGGGCAATCTCAACAGGGGAAACCGTACAGATTTAGAGTTGAATGGCGTGATGGAAGAGGGTGCACTTATACAATGCCCTGAGCCAGTGAGAACACTTCCTCTACTTATCGAGGAGGGTGAATGCCCTGAGCCAGTGAAAACACTTCCTCTACTATGGTAGCAAACCAGCAAGCTATTTGAGTCGTGAGGCAAAGCATTGGGAACGTTTTTTTTGCACTGGTCATGCTAACTGGGCTATATCTCTCTATAAGATGAAAGCTCCTTATTTTTCCGATGAGGACTCGCAATCTATTCGTTTCCCTTGTCTCCGATTGTATAACTATGATTGTCTTGTTTATACCTATTTATTAACTACTTGTACTATACTAAACCCGTG

Coding sequence (CDS)

ATGGAGAAGAACGAAATTGCAACATCAATGTCTTTCCTTCCCGGACACAACTTGACTCCTCAGTCACTCCTGAGAGTATCTATATTCAATTTCCAGAGAGAGAAAGTAAGATCGCCACAACCTACAAACAAAAACAAGATAAGGATGGGAAGAAGGAAGATAGAGATGAAGCGAATTGAAGATAAAAGCAGTCGTCAGGTCACTTTCTCTAAGCGCCGTTCTGGTCTCATCAAGAAGGCTCGCGAACTCTCTATCCTTTGCGATGTTGATGTTGCTGTTCTCGTCTTCTCCAATCGCGGTCGCCTCTACGAGTTCGTCAGCGGTGCTTCGTCTTCTTCCAGCGCAACAATCATATACATTTTCGATTTCACTAGAAGGACAAGGAGGAGAAAGAATTGCAAATGGTATAGAGGAGTCCAAAAGAAAATGAATCTTTGGCTCCATTGGGAAATGACTCCTAATACCTCTTCACTTCCTTCCCATGAAGTAGAAGACTGTTGTCCCATTAACGTCCCGTTATCTCTTTTGGATCAATTGGAAACAACCTCTCTGCAATTGCAGGGTTTGTCTCAGATTCTTAGGCGATATCAAGATTCCACTGATGGAAAAGCATCAAACGTTGATGATGAAACTGAGGATTCCCCGTCTACTTGTATACAAGTCCAAACATGCGGCGAGCTAGTGAAAACAGTTGAAAGGTATGCAGAAGGCTCAGGTATTGAGAATCTTAGTCTAGAGGATTTCATGCAGCTGGAGAAACAACTAAACGATGCCCTTGTACAGACTAGAAACCGAAAGGCTCAGCTTATGCTAGAATCTGTTGCTACACTGCGTGAAAAGGAGAAGATGCTGACACAAGAGAATGACCAGTTGAAGGACGAGGTTGCTAAAGTTAAGGGCAATCTCAACAGGGGAAACCGTACAGATTTAGAGTTGAATGGCGTGATGGAAGAGGGTGCACTTATACAATGCCCTGAGCCAGTGAGAACACTTCCTCTACTTATCGAGGAGGGTGAATGCCCTGAGCCAGTGAAAACACTTCCTCTACTATGGTAG

Protein sequence

MEKNEIATSMSFLPGHNLTPQSLLRVSIFNFQREKVRSPQPTNKNKIRMGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSGASSSSSATIIYIFDFTRRTRRRKNCKWYRGVQKKMNLWLHWEMTPNTSSLPSHEVEDCCPINVPLSLLDQLETTSLQLQGLSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRTDLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04942.1	Spo04942.1	mRNA

Homology

[Close]

BLAST of Spo04942.1 vs. NCBI nr
Match: gi|902206334|gb|KNA15436.1| (hypothetical protein SOVF_098330 isoform A [Spinacia oleracea])

HSP 1 Score: 315.5 bits (807), Expect = 1.200e-82
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


		  
Query: 189 LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 248
           LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF
Sbjct: 67  LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 126

Query: 249 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 308
           MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT
Sbjct: 127 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 186

Query: 309 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 352
           DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW
Sbjct: 187 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 229

[Close]

BLAST of Spo04942.1 vs. NCBI nr
Match: gi|902206335|gb|KNA15437.1| (hypothetical protein SOVF_098330 isoform B [Spinacia oleracea])

HSP 1 Score: 315.5 bits (807), Expect = 1.200e-82
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


		  
Query: 189 LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 248
           LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF
Sbjct: 88  LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 147

Query: 249 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 308
           MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT
Sbjct: 148 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 207

Query: 309 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 352
           DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW
Sbjct: 208 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 250

[Close]

BLAST of Spo04942.1 vs. NCBI nr
Match: gi|84311261|gb|ABC55432.1| (FLC-like 1 splice variant 4 [Beta vulgaris subsp. maritima])

HSP 1 Score: 171.8 bits (434), Expect = 2.100e-39
Identity = 97/148 (65.54%), Postives = 114/148 (77.03%), Query Frame = 1


		  
Query: 189 LSQILRRYQDST--DGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLE 248
           LSQIL+RYQDST  DGKAS    ETE SPS+C +VQTCGELVK+VERY EG  +ENL LE
Sbjct: 66  LSQILKRYQDSTAADGKASIAAVETESSPSSCAEVQTCGELVKSVERYLEGPELENLRLE 125

Query: 249 DFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGN 308
           DFM+LE+QL DAL+QTR RK QLMLES+ TLRE+EK+L QEN+QLKDEVA + G     N
Sbjct: 126 DFMRLERQLADALIQTRTRKTQLMLESIGTLREQEKLLKQENEQLKDEVANLIGISKSRN 185

Query: 309 RTDLELNGVMEEGALIQCPEPVRTLPLL 335
             DL +N +ME  A  Q  +P+RTLPLL
Sbjct: 186 HKDLGVNNLMEVDADGQYSQPLRTLPLL 213

[Close]

BLAST of Spo04942.1 vs. NCBI nr
Match: gi|731343116|ref|XP_010682732.1| (PREDICTED: MADS-box transcription factor 23-like isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 169.9 bits (429), Expect = 8.100e-39
Identity = 97/148 (65.54%), Postives = 113/148 (76.35%), Query Frame = 1


		  
Query: 189 LSQILRRYQDST--DGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLE 248
           LSQIL+RYQDST  DGKAS    ETE SPS+C +VQTCGELVK+VERY EG  +ENL LE
Sbjct: 66  LSQILKRYQDSTAADGKASIAAVETESSPSSCAEVQTCGELVKSVERYLEGPELENLRLE 125

Query: 249 DFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGN 308
           DFM+LE+QL DALVQTR RK QLMLES+ TL E+EK+L QEN+QLKDEVA + G     N
Sbjct: 126 DFMRLERQLADALVQTRTRKTQLMLESIGTLSEQEKLLKQENEQLKDEVANLIGIPKSRN 185

Query: 309 RTDLELNGVMEEGALIQCPEPVRTLPLL 335
             DL +N +ME  A  Q  +P+RTLPLL
Sbjct: 186 HKDLGVNNLMEVDADRQYSQPLRTLPLL 213

[Close]

BLAST of Spo04942.1 vs. NCBI nr
Match: gi|84311264|gb|ABC55435.1| (FLC-like 1 splice variant 1 [Beta vulgaris subsp. maritima])

HSP 1 Score: 167.2 bits (422), Expect = 5.300e-38
Identity = 97/149 (65.10%), Postives = 114/149 (76.51%), Query Frame = 1


		  
Query: 189 LSQILRRYQDST--DGKASNVDDETEDS-PSTCIQVQTCGELVKTVERYAEGSGIENLSL 248
           LSQIL+RYQDST  DGKAS    ETE S PS+C +VQTCGELVK+VERY EG  +ENL L
Sbjct: 66  LSQILKRYQDSTAADGKASIAAVETEQSSPSSCAEVQTCGELVKSVERYLEGPELENLRL 125

Query: 249 EDFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRG 308
           EDFM+LE+QL DAL+QTR RK QLMLES+ TLRE+EK+L QEN+QLKDEVA + G     
Sbjct: 126 EDFMRLERQLADALIQTRTRKTQLMLESIGTLREQEKLLKQENEQLKDEVANLIGISKSR 185

Query: 309 NRTDLELNGVMEEGALIQCPEPVRTLPLL 335
           N  DL +N +ME  A  Q  +P+RTLPLL
Sbjct: 186 NHKDLGVNNLMEVDADGQYSQPLRTLPLL 214

[Close]

BLAST of Spo04942.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R7G4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_098330 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 8.400e-83
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


		  
Query: 189 LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 248
           LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF
Sbjct: 67  LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 126

Query: 249 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 308
           MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT
Sbjct: 127 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 186

Query: 309 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 352
           DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW
Sbjct: 187 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 229

[Close]

BLAST of Spo04942.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R9G5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_098330 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 8.400e-83
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


		  
Query: 189 LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 248
           LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF
Sbjct: 88  LSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLEDF 147

Query: 249 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 308
           MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT
Sbjct: 148 MQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGNRT 207

Query: 309 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 352
           DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW
Sbjct: 208 DLELNGVMEEGALIQCPEPVRTLPLLIEEGECPEPVKTLPLLW 250

[Close]

BLAST of Spo04942.1 vs. UniProtKB/TrEMBL
Match: A2CHK0_BETVM (FLC-like 1 splice variant 4 OS=Beta vulgaris subsp. maritima GN=FL1 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.500e-39
Identity = 97/148 (65.54%), Postives = 114/148 (77.03%), Query Frame = 1


		  
Query: 189 LSQILRRYQDST--DGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLE 248
           LSQIL+RYQDST  DGKAS    ETE SPS+C +VQTCGELVK+VERY EG  +ENL LE
Sbjct: 66  LSQILKRYQDSTAADGKASIAAVETESSPSSCAEVQTCGELVKSVERYLEGPELENLRLE 125

Query: 249 DFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGN 308
           DFM+LE+QL DAL+QTR RK QLMLES+ TLRE+EK+L QEN+QLKDEVA + G     N
Sbjct: 126 DFMRLERQLADALIQTRTRKTQLMLESIGTLREQEKLLKQENEQLKDEVANLIGISKSRN 185

Query: 309 RTDLELNGVMEEGALIQCPEPVRTLPLL 335
             DL +N +ME  A  Q  +P+RTLPLL
Sbjct: 186 HKDLGVNNLMEVDADGQYSQPLRTLPLL 213

[Close]

BLAST of Spo04942.1 vs. UniProtKB/TrEMBL
Match: A2T9D2_BETVU (FLC-like 1 splice variant 4 OS=Beta vulgaris subsp. vulgaris GN=FL1 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.700e-39
Identity = 97/148 (65.54%), Postives = 113/148 (76.35%), Query Frame = 1


		  
Query: 189 LSQILRRYQDST--DGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLE 248
           LSQIL+RYQDST  DGKAS    ETE SPS+C +VQTCGELVK+VERY EG  +ENL LE
Sbjct: 66  LSQILKRYQDSTAADGKASIAAVETESSPSSCAEVQTCGELVKSVERYLEGPELENLRLE 125

Query: 249 DFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGN 308
           DFM+LE+QL DALVQTR RK QLMLES+ TL E+EK+L QEN+QLKDEVA + G     N
Sbjct: 126 DFMRLERQLADALVQTRTRKTQLMLESIGTLSEQEKLLKQENEQLKDEVANLIGIPKSRN 185

Query: 309 RTDLELNGVMEEGALIQCPEPVRTLPLL 335
             DL +N +ME  A  Q  +P+RTLPLL
Sbjct: 186 HKDLGVNNLMEVDADRQYSQPLRTLPLL 213

[Close]

BLAST of Spo04942.1 vs. UniProtKB/TrEMBL
Match: A2CHJ7_BETVU (FLC-like 1 splice variant 4 OS=Beta vulgaris GN=FL1 PE=2 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.700e-39
Identity = 97/148 (65.54%), Postives = 113/148 (76.35%), Query Frame = 1


		  
Query: 189 LSQILRRYQDST--DGKASNVDDETEDSPSTCIQVQTCGELVKTVERYAEGSGIENLSLE 248
           LSQIL+RYQDST  DGKAS    ETE SPS+C +VQTCGELVK+VERY EG  +ENL LE
Sbjct: 66  LSQILKRYQDSTAADGKASIAAVETESSPSSCAEVQTCGELVKSVERYLEGPELENLRLE 125

Query: 249 DFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKMLTQENDQLKDEVAKVKGNLNRGN 308
           DFM+LE+QL DALVQTR RK QLMLES+ TL E+EK+L QEN+QLKDEVA + G     N
Sbjct: 126 DFMRLERQLADALVQTRTRKTQLMLESIGTLSEQEKLLKQENEQLKDEVANLIGIPKSRN 185

Query: 309 RTDLELNGVMEEGALIQCPEPVRTLPLL 335
             DL +N +ME  A  Q  +P+RTLPLL
Sbjct: 186 HKDLGVNNLMEVDADRQYSQPLRTLPLL 213

[Close]

BLAST of Spo04942.1 vs. ExPASy Swiss-Prot
Match: MADS8_ORYSJ (MADS-box transcription factor 8 OS=Oryza sativa subsp. japonica GN=MADS8 PE=1 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.700e-17
Identity = 42/62 (67.74%), Postives = 56/62 (90.32%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR ++E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD +VA+++FSNRG+LYEF SG
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSG 60

Query: 109 AS 111
            S
Sbjct: 61  QS 62

[Close]

BLAST of Spo04942.1 vs. ExPASy Swiss-Prot
Match: AGL3_ARATH (Agamous-like MADS-box protein AGL3 OS=Arabidopsis thaliana GN=AGL3 PE=2 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 1.100e-16
Identity = 42/62 (67.74%), Postives = 55/62 (88.71%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR K+E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD ++A+L+FSNRG+LYEF S 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 109 AS 111
            S
Sbjct: 61  PS 62

[Close]

BLAST of Spo04942.1 vs. ExPASy Swiss-Prot
Match: AGL9_PETHY (Agamous-like MADS-box protein AGL9 homolog OS=Petunia hybrida GN=FBP2 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 2.000e-16
Identity = 41/62 (66.13%), Postives = 56/62 (90.32%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR ++E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD +VA+++FSNRG+LYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 109 AS 111
           +S
Sbjct: 61  SS 62

[Close]

BLAST of Spo04942.1 vs. ExPASy Swiss-Prot
Match: AGL9_SINAL (Agamous-like MADS-box protein AGL9 homolog OS=Sinapis alba GN=AGL9 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.000e-16
Identity = 41/62 (66.13%), Postives = 56/62 (90.32%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR ++E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD +VA+++FSNRG+LYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 109 AS 111
           +S
Sbjct: 61  SS 62

[Close]

BLAST of Spo04942.1 vs. ExPASy Swiss-Prot
Match: SEP3_ARATH (Developmental protein SEPALLATA 3 OS=Arabidopsis thaliana GN=SEP3 PE=1 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 2.000e-16
Identity = 41/62 (66.13%), Postives = 56/62 (90.32%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR ++E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD +VA+++FSNRG+LYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 109 AS 111
           +S
Sbjct: 61  SS 62

[Close]

BLAST of Spo04942.1 vs. TAIR (Arabidopsis)
Match: AT2G03710.1 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 89.0 bits (219), Expect = 6.400e-18
Identity = 42/62 (67.74%), Postives = 55/62 (88.71%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR K+E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD ++A+L+FSNRG+LYEF S 
Sbjct: 1   MGRGKVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCSS 60

Query: 109 AS 111
            S
Sbjct: 61  PS 62

[Close]

BLAST of Spo04942.1 vs. TAIR (Arabidopsis)
Match: AT3G58780.3 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 89.0 bits (219), Expect = 6.400e-18
Identity = 69/254 (27.17%), Postives = 127/254 (50.00%), Query Frame = 1


		  
Query: 48  RMGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVS 107
           ++GR KIE+KRIE+ ++RQVTF KRR+GL+KKA ELS+LCD +VA+++FS RGRLYE+ +
Sbjct: 15  KLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYAN 74

Query: 108 GASSSSSATIIYIFDFTRRTRRRKNCKWYRGVQKKMNLWLHWEMTPNTSSLPSHEVE--- 167
            +         +I+    + +++K         KK NLW++      +S +    +E   
Sbjct: 75  NS---------FIYLLLEKKKKKK---------KKKNLWIY------SSHVVRGTIERYK 134

Query: 168 -DCCPINVPLSLLDQLETTSLQLQGLSQILRRYQDSTDGKASNVDDETEDSPSTCIQVQT 227
             C     P S+ +    T    Q  S++ R+ +D                         
Sbjct: 135 KACSDAVNPPSVTE--ANTQYYQQEASKLRRQIRD------------------------- 194

Query: 228 CGELVKTVERYAEGSGIENLSLEDFMQLEKQLNDALVQTRNRKAQLMLESVATLREKEKM 287
               ++   R+  G  + +L+ ++   LE +L   + + R++K +L++  +  ++++E  
Sbjct: 195 ----IQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREME 213

Query: 288 LTQENDQLKDEVAK 298
           L   N  L+ ++A+
Sbjct: 255 LQHNNMYLRAKIAE 213

[Close]

BLAST of Spo04942.1 vs. TAIR (Arabidopsis)
Match: AT1G24260.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 88.2 bits (217), Expect = 1.100e-17
Identity = 41/62 (66.13%), Postives = 56/62 (90.32%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR ++E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD +VA+++FSNRG+LYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 109 AS 111
           +S
Sbjct: 61  SS 62

[Close]

BLAST of Spo04942.1 vs. TAIR (Arabidopsis)
Match: AT5G15800.2 (K-box region and MADS-box transcription factor family protein )

HSP 1 Score: 87.0 bits (214), Expect = 2.400e-17
Identity = 40/62 (64.52%), Postives = 56/62 (90.32%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVSG 108
           MGR ++E+KRIE+K +RQVTF+KRR+GL+KKA ELS+LCD +VA+++FSNRG+LYEF S 
Sbjct: 1   MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query: 109 AS 111
           ++
Sbjct: 61  SN 62

[Close]

BLAST of Spo04942.1 vs. TAIR (Arabidopsis)
Match: AT5G13790.1 (AGAMOUS-like 15)

HSP 1 Score: 86.3 bits (212), Expect = 4.200e-17
Identity = 43/59 (72.88%), Postives = 53/59 (89.83%), Query Frame = 1


		  
Query: 49  MGRRKIEMKRIEDKSSRQVTFSKRRSGLIKKARELSILCDVDVAVLVFSNRGRLYEFVS 108
           MGR KIE+KRIE+ +SRQVTFSKRRSGL+KKARELS+LCD +VAV+VFS  G+L+E+ S
Sbjct: 1   MGRGKIEIKRIENANSRQVTFSKRRSGLLKKARELSVLCDAEVAVIVFSKSGKLFEYSS 59

The following BLAST results are available for this feature:

BLAST of Spo04942.1 vs. NCBI nr
BLAST of Spo04942.1 vs. UniProtKB/TrEMBL
BLAST of Spo04942.1 vs. ExPASy Swiss-Prot
BLAST of Spo04942.1 vs. TAIR (Arabidopsis)

BLAST of Spo04942.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902206334\|gb\|KNA15436.1\|	1.2e-82	100.	hypothetical protein SOVF_0983...	[more]
gi\|902206335\|gb\|KNA15437.1\|	1.2e-82	100.	hypothetical protein SOVF_0983...	[more]
gi\|84311261\|gb\|ABC55432.1\|	2.1e-39	65.5	FLC-like 1 splice variant 4 [B...	[more]
gi\|731343116\|ref\|XP_010682732.1\|	8.1e-39	65.5	PREDICTED: MADS-box transcript...	[more]
gi\|84311264\|gb\|ABC55435.1\|	5.3e-38	65.1	FLC-like 1 splice variant 1 [B...	[more]

BLAST of Spo04942.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9R7G4_SPIOL	8.4e-83	100.	Uncharacterized protein OS=Spi...	[more]
A0A0K9R9G5_SPIOL	8.4e-83	100.	Uncharacterized protein OS=Spi...	[more]
A2CHK0_BETVM	1.5e-39	65.5	FLC-like 1 splice variant 4 OS...	[more]
A2T9D2_BETVU	5.7e-39	65.5	FLC-like 1 splice variant 4 OS...	[more]
A2CHJ7_BETVU	5.7e-39	65.5	FLC-like 1 splice variant 4 OS...	[more]

BLAST of Spo04942.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
MADS8_ORYSJ	6.7e-17	67.7	MADS-box transcription factor ...	[more]
AGL3_ARATH	1.1e-16	67.7	Agamous-like MADS-box protein ...	[more]
AGL9_PETHY	2.0e-16	66.1	Agamous-like MADS-box protein ...	[more]
AGL9_SINAL	2.0e-16	66.1	Agamous-like MADS-box protein ...	[more]
SEP3_ARATH	2.0e-16	66.1	Developmental protein SEPALLAT...	[more]

BLAST of Spo04942.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G03710.1	6.4e-18	67.7	K-box region and MADS-box tran...	[more]
AT3G58780.3	6.4e-18	27.1	K-box region and MADS-box tran...	[more]
AT1G24260.2	1.1e-17	66.1	K-box region and MADS-box tran...	[more]
AT5G15800.2	2.4e-17	64.5	K-box region and MADS-box tran...	[more]
AT5G13790.1	4.2e-17	72.8	AGAMOUS-like 15	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002100	Transcription factor, MADS-box	PRINTS	PR00404	MADSDOMAIN	coord: 71..86 score: 1.4E-26coord: 86..107 score: 1.4E-26coord: 51..71 score: 1.4
IPR002100	Transcription factor, MADS-box	PFAM	PF00319	SRF-TF	coord: 58..105 score: 4.8
IPR002100	Transcription factor, MADS-box	SMART	SM00432	madsneu2	coord: 49..108 score: 6.9
IPR002100	Transcription factor, MADS-box	PROSITE	PS00350	MADS_BOX_1	coord: 51..105 scor
IPR002100	Transcription factor, MADS-box	PROFILE	PS50066	MADS_BOX_2	coord: 49..109 score: 30
IPR002100	Transcription factor, MADS-box	unknown	SSF55455	SRF-like	coord: 49..109 score: 3.27
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 228..295 score: 5.3
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 211..301 score:
None	No IPR available	unknown	Coil	Coil	coord: 252..272 score: -coord: 274..308 scor
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 225..296 score: 1.6E-48coord: 50..134 score: 1.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0046983	protein dimerization activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo24818	0.70	Barchart \| Table
Spo27044	0.68	Barchart \| Table
Spo24752	0.67	Barchart \| Table
Spo23664	0.67	Barchart \| Table
Spo23852	0.66	Barchart \| Table
Spo18997	0.65	Barchart \| Table
Spo23003	0.65	Barchart \| Table