Spo04959 (gene) | SpinachBase

Overview


Name	Spo04959
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Pollen Ole e 1 allergen and extensin family protein, putative
Location	chr1 : 47832123 .. 47833747 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CATCCAAATTGCCTTCTTCACATGCCTTTGTTTTGTACTCCATAGTGGAATAAAAATCGAACACAAAAAGAAAGAAAGAGCATCACCCCATTGTGATAACAATTGACCCTACCAACAAAAACTCACGGGCATATTACTGCACCAAAACATTAAAGGATTATCTACAACTTATAAAGTGTAAATTGCCTCTGATTCTCTTCATCATGGACTACTAAATGCTTCTGTATTTCTAACTTTGCTGGGATGTTCTCTACTTAGAACCTTCTATACTACTACATCCCCCTCCCAATGTCTCCTCCCATGGATATAATGGCTTTCACTCTACTCTTTGCGGTTTTCTTCGGTCATTCTCTCGGTTTTCTGGCTCAATCTACGCCGACCATCAGCTCTCGCATTACTGTGGTAGGTGCTGTTTACTGTGATACGTGTCTCAACGACGGTTTTTCAAGACACAGCTACTTCATTCCAGGTAAACTACTTACAGATATCCTGCTAAAACTCACAGTTTTCACTTAAGTTGTGTTTGGTTTGGAAGAAAATGATTTTGAACAGAATTTCATTTTGTATGCATAGTTAATTTATCAGGTATTCAGCTTTCTTCTTTGTTAGAAAAACTAGAGGGAGGATGTGGAGGAAAATGTGGCATTCCTTCCTGAACTAAGTAAAGGGGACTTAATAGTTTTTTTTCCTGAAAAAAGGATTCTCATTGCAACCAACAAAGCCTCTATCACTGATATTGTATTGCATAAAACCAAAGTATAATAGGTTCTGTTTGATATTCTAGGTGCTGATGTACACATACAATGCAAATTCAATGCAATATCCCCCAAAACGGCGGAGATGATATCCTTCAAAGTTAACAGAACAACAGATATATATGGAGTATACAAGCTAGAAATACCTTCTGTAGATGGGATAGATTGTGTGGACGGTCCTCCGATCCAATCCTTCTGTCAGGCAAGTTTGCTGGGAAGCTCTTCAGAAGTCTGCAATATTCCAGCCCTGAAAGCAACAACAACTGAAGTTTCAGTCAAATCCAGAAAAGATAATCTTTGCGTTTACAGCTTCACTCCCCTGAGTTTCAGACCGAGAAAAAGGGATGATACCTTGTGCAGGAAAAAAGCACATGAAAAAGAATCATCAAATTCTGTTAAATCCTCCAAGTCCTTGCTTCCGCATGGTACAAATCAACAAATTTCTTCTGTATTTGATATACGCGATCCAAGAACTTGGACCTCCGTAATTCCTCTATTCAATGCACCAAACCTTCGAAAACAGAATCCATAAAGCAGGATTTTCTGTTTTCTCGGTATTAAAAATTATTGCAATATATTGTTTCCTTGTTAAACAGATTGAGACTCAAAATATGAGTCTAAGATGTACAGCAGGAATCTATGTATAAATACTGTAATTTATTTGTGTTAAATCACTACAGCCAATATAGCATAAGCATTCTTTTAATCAGATATTCACCGATTCACAATTCTACAGCAAAGTAATTCCAGGAAAGAAACGTAAGAGAGATGCAGTGTAACATGGAAATGAACAACAGCTAACATTATAGCAAATTATCAGCATAAGTATACATTTCTTCTGTAAGAACATATTGGATATTGAGAAAACAA

mRNA sequence

CATCCAAATTGCCTTCTTCACATGCCTTTGTTTTGTACTCCATAGTGGAATAAAAATCGAACACAAAAAGAAAGAAAGAGCATCACCCCATTGTGATAACAATTGACCCTACCAACAAAAACTCACGGGCATATTACTGCACCAAAACATTAAAGGATTATCTACAACTTATAAAGTGTAAATTGCCTCTGATTCTCTTCATCATGGACTACTAAATGCTTCTGTATTTCTAACTTTGCTGGGATGTTCTCTACTTAGAACCTTCTATACTACTACATCCCCCTCCCAATGTCTCCTCCCATGGATATAATGGCTTTCACTCTACTCTTTGCGGTTTTCTTCGGTCATTCTCTCGGTTTTCTGGCTCAATCTACGCCGACCATCAGCTCTCGCATTACTGTGGTAGGTGCTGTTTACTGTGATACGTGTCTCAACGACGGTTTTTCAAGACACAGCTACTTCATTCCAGGTGCTGATGTACACATACAATGCAAATTCAATGCAATATCCCCCAAAACGGCGGAGATGATATCCTTCAAAGTTAACAGAACAACAGATATATATGGAGTATACAAGCTAGAAATACCTTCTGTAGATGGGATAGATTGTGTGGACGGTCCTCCGATCCAATCCTTCTGTCAGGCAAGTTTGCTGGGAAGCTCTTCAGAAGTCTGCAATATTCCAGCCCTGAAAGCAACAACAACTGAAGTTTCAGTCAAATCCAGAAAAGATAATCTTTGCGTTTACAGCTTCACTCCCCTGAGTTTCAGACCGAGAAAAAGGGATGATACCTTGTGCAGGAAAAAAGCACATGAAAAAGAATCATCAAATTCTGTTAAATCCTCCAAGTCCTTGCTTCCGCATGGTACAAATCAACAAATTTCTTCTGTATTTGATATACGCGATCCAAGAACTTGGACCTCCGTAATTCCTCTATTCAATGCACCAAACCTTCGAAAACAGAATCCATAAAGCAGGATTTTCTGTTTTCTCGGTATTAAAAATTATTGCAATATATTGTTTCCTTGTTAAACAGATTGAGACTCAAAATATGAGTCTAAGATGTACAGCAGGAATCTATGTATAAATACTGTAATTTATTTGTGTTAAATCACTACAGCCAATATAGCATAAGCATTCTTTTAATCAGATATTCACCGATTCACAATTCTACAGCAAAGTAATTCCAGGAAAGAAACGTAAGAGAGATGCAGTGTAACATGGAAATGAACAACAGCTAACATTATAGCAAATTATCAGCATAAGTATACATTTCTTCTGTAAGAACATATTGGATATTGAGAAAACAA

Coding sequence (CDS)

ATGTCTCCTCCCATGGATATAATGGCTTTCACTCTACTCTTTGCGGTTTTCTTCGGTCATTCTCTCGGTTTTCTGGCTCAATCTACGCCGACCATCAGCTCTCGCATTACTGTGGTAGGTGCTGTTTACTGTGATACGTGTCTCAACGACGGTTTTTCAAGACACAGCTACTTCATTCCAGGTGCTGATGTACACATACAATGCAAATTCAATGCAATATCCCCCAAAACGGCGGAGATGATATCCTTCAAAGTTAACAGAACAACAGATATATATGGAGTATACAAGCTAGAAATACCTTCTGTAGATGGGATAGATTGTGTGGACGGTCCTCCGATCCAATCCTTCTGTCAGGCAAGTTTGCTGGGAAGCTCTTCAGAAGTCTGCAATATTCCAGCCCTGAAAGCAACAACAACTGAAGTTTCAGTCAAATCCAGAAAAGATAATCTTTGCGTTTACAGCTTCACTCCCCTGAGTTTCAGACCGAGAAAAAGGGATGATACCTTGTGCAGGAAAAAAGCACATGAAAAAGAATCATCAAATTCTGTTAAATCCTCCAAGTCCTTGCTTCCGCATGGTACAAATCAACAAATTTCTTCTGTATTTGATATACGCGATCCAAGAACTTGGACCTCCGTAATTCCTCTATTCAATGCACCAAACCTTCGAAAACAGAATCCATAA

Protein sequence

MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIPGADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQASLLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESSNSVKSSKSLLPHGTNQQISSVFDIRDPRTWTSVIPLFNAPNLRKQNP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04959.1	Spo04959.1	mRNA

Homology

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BLAST of Spo04959.1 vs. NCBI nr
Match: gi|902236119|gb|KNA24224.1| (hypothetical protein SOVF_017710 [Spinacia oleracea])

HSP 1 Score: 461.1 bits (1185), Expect = 1.100e-126
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1


		  
Query: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP 60
           MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP
Sbjct: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP 60

Query: 61  GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS 120
           GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS
Sbjct: 61  GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS 120

Query: 121 LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS 180
           LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS
Sbjct: 121 LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS 180

Query: 181 NSVKSSKSLLPHGTNQQISSVFDIRDPRTWTSVIPLFNAPNLRKQNP 228
           NSVKSSKSLLPHGTNQQISSVFDIRDPRTWTSVIPLFNAPNLRKQNP
Sbjct: 181 NSVKSSKSLLPHGTNQQISSVFDIRDPRTWTSVIPLFNAPNLRKQNP 227

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BLAST of Spo04959.1 vs. NCBI nr
Match: gi|731343052|ref|XP_010682699.1| (PREDICTED: leucine-rich repeat extensin-like protein 3 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 293.5 bits (750), Expect = 3.200e-76
Identity = 141/186 (75.81%), Postives = 162/186 (87.10%), Query Frame = 1


		  
Query: 8   MAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIPGADVHIQ 67
           MAF+LL  + FGH L  LA STP ISSRITVVGAVYCDTCL+DGFS+HSYFIPGADVHIQ
Sbjct: 8   MAFSLLLMIIFGHPLALLAHSTPPISSRITVVGAVYCDTCLSDGFSKHSYFIPGADVHIQ 67

Query: 68  CKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQASLLGSSSE 127
           C+FNA  PKT+EMISF VNRTTDIYGVYKLEIPSV+G+DCVDGPPIQSFCQASLL SSS 
Sbjct: 68  CRFNANVPKTSEMISFSVNRTTDIYGVYKLEIPSVEGVDCVDGPPIQSFCQASLLESSSS 127

Query: 128 VCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHE--KESSNSVKS 187
            CN+P+LKATTTEVSVKS+++NLCVYSFTPLSFRP KR+DT+CRK+ H+  + SS S+  
Sbjct: 128 ACNVPSLKATTTEVSVKSKQENLCVYSFTPLSFRPSKRNDTICRKRGHKSSQASSRSISQ 187

Query: 188 SKSLLP 192
           + +L P
Sbjct: 188 AANLQP 193

[Close]

BLAST of Spo04959.1 vs. NCBI nr
Match: gi|870855681|gb|KMT07397.1| (hypothetical protein BVRB_6g150230 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 293.5 bits (750), Expect = 3.200e-76
Identity = 141/186 (75.81%), Postives = 162/186 (87.10%), Query Frame = 1


		  
Query: 8   MAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIPGADVHIQ 67
           MAF+LL  + FGH L  LA STP ISSRITVVGAVYCDTCL+DGFS+HSYFIPGADVHIQ
Sbjct: 1   MAFSLLLMIIFGHPLALLAHSTPPISSRITVVGAVYCDTCLSDGFSKHSYFIPGADVHIQ 60

Query: 68  CKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQASLLGSSSE 127
           C+FNA  PKT+EMISF VNRTTDIYGVYKLEIPSV+G+DCVDGPPIQSFCQASLL SSS 
Sbjct: 61  CRFNANVPKTSEMISFSVNRTTDIYGVYKLEIPSVEGVDCVDGPPIQSFCQASLLESSSS 120

Query: 128 VCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHE--KESSNSVKS 187
            CN+P+LKATTTEVSVKS+++NLCVYSFTPLSFRP KR+DT+CRK+ H+  + SS S+  
Sbjct: 121 ACNVPSLKATTTEVSVKSKQENLCVYSFTPLSFRPSKRNDTICRKRGHKSSQASSRSISQ 180

Query: 188 SKSLLP 192
           + +L P
Sbjct: 181 AANLQP 186

[Close]

BLAST of Spo04959.1 vs. NCBI nr
Match: gi|566148756|ref|XP_002299330.2| (hypothetical protein POPTR_0001s13450g [Populus trichocarpa])

HSP 1 Score: 228.0 bits (580), Expect = 1.600e-56
Identity = 121/256 (47.27%), Postives = 158/256 (61.72%), Query Frame = 1


		  
Query: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP 60
           MS PM  +   +  A  F   L  +A+     +SRI+VVG VYCDTC  + FSRHSYF+P
Sbjct: 1   MSAPMAPIIILVFLATLFALPLSLIARPATNPTSRISVVGVVYCDTCSTNTFSRHSYFLP 60

Query: 61  GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS 120
           GADVHIQC FNA SPKT E I F VNRTTD YG+YKLE+P VDG+DC +G  I+S CQA+
Sbjct: 61  GADVHIQCIFNANSPKTREKIEFSVNRTTDRYGIYKLEVPEVDGVDCEEGFAIESVCQAN 120

Query: 121 LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS 180
           L+GSSS VCN+P L+ +T E+SVKS+++NLC+YS   LS+RP K++ TLC   +H++E  
Sbjct: 121 LIGSSSRVCNVPGLRISTNEISVKSKQNNLCIYSLNALSYRPSKKNITLC--GSHKEELP 180

Query: 181 NSVKSSKSLLPHGTNQ----------------------QISSV-------FDIRDPRTWT 228
           NS+ SSK  LP+                           I S+       F++RDP+TW 
Sbjct: 181 NSLNSSKFFLPYFPPYGFPWPPLPNLPPLPNFPPTWIPNIPSLAPPPPPAFNLRDPKTWI 240

[Close]

BLAST of Spo04959.1 vs. NCBI nr
Match: gi|567892591|ref|XP_006438816.1| (hypothetical protein CICLE_v10032019mg [Citrus clementina])

HSP 1 Score: 222.6 bits (566), Expect = 6.800e-55
Identity = 112/193 (58.03%), Postives = 141/193 (73.06%), Query Frame = 1


		  
Query: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQ-STPTISSRITVVGAVYCDTCLNDGFSRHSYFI 60
           MS  +D   + +L A+ F H+L  + Q +TPT  SRITVVG V+CDTC  + FSRHSYF+
Sbjct: 12  MSSSIDHFLYVVL-ALLFIHTLSAIEQPATPT--SRITVVGVVFCDTCSTNSFSRHSYFL 71

Query: 61  PGADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQA 120
           PGADVHIQCKF A SPKTAE I F VNRTTD +GVYKLEIP VDG+DCVDG  I+S CQA
Sbjct: 72  PGADVHIQCKFKASSPKTAEQIDFSVNRTTDKHGVYKLEIPHVDGVDCVDGMAIESLCQA 131

Query: 121 SLLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKES 180
           SLL SSS  C++P LK  T E+SVKS++D+LC+YS   +S+RP +R+ TLC     + + 
Sbjct: 132 SLLESSSSACSVPGLKTATNEISVKSKQDSLCIYSLKAMSYRPSERNATLCGNHKQDSQK 191

Query: 181 SNSVKSSKSLLPH 193
           S ++ SSK  LP+
Sbjct: 192 SKALGSSKFFLPY 201

[Close]

BLAST of Spo04959.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ71_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017710 PE=4 SV=1)

HSP 1 Score: 461.1 bits (1185), Expect = 8.000e-127
Identity = 227/227 (100.00%), Postives = 227/227 (100.00%), Query Frame = 1


		  
Query: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP 60
           MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP
Sbjct: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP 60

Query: 61  GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS 120
           GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS
Sbjct: 61  GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS 120

Query: 121 LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS 180
           LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS
Sbjct: 121 LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS 180

Query: 181 NSVKSSKSLLPHGTNQQISSVFDIRDPRTWTSVIPLFNAPNLRKQNP 228
           NSVKSSKSLLPHGTNQQISSVFDIRDPRTWTSVIPLFNAPNLRKQNP
Sbjct: 181 NSVKSSKSLLPHGTNQQISSVFDIRDPRTWTSVIPLFNAPNLRKQNP 227

[Close]

BLAST of Spo04959.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1P6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g150230 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.200e-76
Identity = 141/186 (75.81%), Postives = 162/186 (87.10%), Query Frame = 1


		  
Query: 8   MAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIPGADVHIQ 67
           MAF+LL  + FGH L  LA STP ISSRITVVGAVYCDTCL+DGFS+HSYFIPGADVHIQ
Sbjct: 1   MAFSLLLMIIFGHPLALLAHSTPPISSRITVVGAVYCDTCLSDGFSKHSYFIPGADVHIQ 60

Query: 68  CKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQASLLGSSSE 127
           C+FNA  PKT+EMISF VNRTTDIYGVYKLEIPSV+G+DCVDGPPIQSFCQASLL SSS 
Sbjct: 61  CRFNANVPKTSEMISFSVNRTTDIYGVYKLEIPSVEGVDCVDGPPIQSFCQASLLESSSS 120

Query: 128 VCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHE--KESSNSVKS 187
            CN+P+LKATTTEVSVKS+++NLCVYSFTPLSFRP KR+DT+CRK+ H+  + SS S+  
Sbjct: 121 ACNVPSLKATTTEVSVKSKQENLCVYSFTPLSFRPSKRNDTICRKRGHKSSQASSRSISQ 180

Query: 188 SKSLLP 192
           + +L P
Sbjct: 181 AANLQP 186

[Close]

BLAST of Spo04959.1 vs. UniProtKB/TrEMBL
Match: B9GMP5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s13450g PE=4 SV=2)

HSP 1 Score: 228.0 bits (580), Expect = 1.100e-56
Identity = 121/256 (47.27%), Postives = 158/256 (61.72%), Query Frame = 1


		  
Query: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIP 60
           MS PM  +   +  A  F   L  +A+     +SRI+VVG VYCDTC  + FSRHSYF+P
Sbjct: 1   MSAPMAPIIILVFLATLFALPLSLIARPATNPTSRISVVGVVYCDTCSTNTFSRHSYFLP 60

Query: 61  GADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQAS 120
           GADVHIQC FNA SPKT E I F VNRTTD YG+YKLE+P VDG+DC +G  I+S CQA+
Sbjct: 61  GADVHIQCIFNANSPKTREKIEFSVNRTTDRYGIYKLEVPEVDGVDCEEGFAIESVCQAN 120

Query: 121 LLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESS 180
           L+GSSS VCN+P L+ +T E+SVKS+++NLC+YS   LS+RP K++ TLC   +H++E  
Sbjct: 121 LIGSSSRVCNVPGLRISTNEISVKSKQNNLCIYSLNALSYRPSKKNITLC--GSHKEELP 180

Query: 181 NSVKSSKSLLPHGTNQ----------------------QISSV-------FDIRDPRTWT 228
           NS+ SSK  LP+                           I S+       F++RDP+TW 
Sbjct: 181 NSLNSSKFFLPYFPPYGFPWPPLPNLPPLPNFPPTWIPNIPSLAPPPPPAFNLRDPKTWI 240

[Close]

BLAST of Spo04959.1 vs. UniProtKB/TrEMBL
Match: V4TQB2_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10032019mg PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 4.800e-55
Identity = 112/193 (58.03%), Postives = 141/193 (73.06%), Query Frame = 1


		  
Query: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQ-STPTISSRITVVGAVYCDTCLNDGFSRHSYFI 60
           MS  +D   + +L A+ F H+L  + Q +TPT  SRITVVG V+CDTC  + FSRHSYF+
Sbjct: 12  MSSSIDHFLYVVL-ALLFIHTLSAIEQPATPT--SRITVVGVVFCDTCSTNSFSRHSYFL 71

Query: 61  PGADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQA 120
           PGADVHIQCKF A SPKTAE I F VNRTTD +GVYKLEIP VDG+DCVDG  I+S CQA
Sbjct: 72  PGADVHIQCKFKASSPKTAEQIDFSVNRTTDKHGVYKLEIPHVDGVDCVDGMAIESLCQA 131

Query: 121 SLLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKES 180
           SLL SSS  C++P LK  T E+SVKS++D+LC+YS   +S+RP +R+ TLC     + + 
Sbjct: 132 SLLESSSSACSVPGLKTATNEISVKSKQDSLCIYSLKAMSYRPSERNATLCGNHKQDSQK 191

Query: 181 SNSVKSSKSLLPH 193
           S ++ SSK  LP+
Sbjct: 192 SKALGSSKFFLPY 201

[Close]

BLAST of Spo04959.1 vs. UniProtKB/TrEMBL
Match: A0A067GWQ5_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019417mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 1.100e-54
Identity = 111/193 (57.51%), Postives = 141/193 (73.06%), Query Frame = 1


		  
Query: 1   MSPPMDIMAFTLLFAVFFGHSLGFLAQ-STPTISSRITVVGAVYCDTCLNDGFSRHSYFI 60
           MS  +D   + +L A+ F H+L  + Q +TPT  SRITVVG V+CDTC  + FSRHSYF+
Sbjct: 12  MSSSIDHFLYVVL-ALLFIHTLSAIEQPATPT--SRITVVGVVFCDTCSTNSFSRHSYFL 71

Query: 61  PGADVHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQA 120
           PGADVH+QCKF A SPKTAE I F VNRTTD +GVYKLEIP VDG+DCVDG  I+S CQA
Sbjct: 72  PGADVHMQCKFKASSPKTAEQIDFSVNRTTDKHGVYKLEIPHVDGVDCVDGMAIESLCQA 131

Query: 121 SLLGSSSEVCNIPALKATTTEVSVKSRKDNLCVYSFTPLSFRPRKRDDTLCRKKAHEKES 180
           SLL SSS  C++P LK  T E+SVKS++D+LC+YS   +S+RP +R+ TLC     + + 
Sbjct: 132 SLLESSSSACSVPGLKTATNEISVKSKQDSLCIYSLKAMSYRPSERNATLCGNHKQDSQK 191

Query: 181 SNSVKSSKSLLPH 193
           S ++ SSK  LP+
Sbjct: 192 SKALGSSKFFLPY 201

[Close]

BLAST of Spo04959.1 vs. TAIR (Arabidopsis)
Match: AT5G13140.1 (Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 170.2 bits (430), Expect = 1.400e-42
Identity = 93/203 (45.81%), Postives = 122/203 (60.10%), Query Frame = 1


		  
Query: 33  SSRITVVGAVYCDTCLNDGFSRHSYFIPGADVHIQCKFNAISPKTAEMISFKVNRTTDIY 92
           SSRITVVG VYCDTC  + FSR SYF+ G +VH+ C+F A SPKTAE ++  VNRTT+  
Sbjct: 36  SSRITVVGVVYCDTCSINTFSRQSYFLQGVEVHVTCRFKASSPKTAEEVNISVNRTTNRS 95

Query: 93  GVYKLEIPSVDGIDCVDGPPIQSFCQASLLGSSSE---VCNIPALKATTTEVSVKSRKDN 152
           GVYKLEIP VDGIDCVDG  I S C A +L +SS+    C+IP  +  T EVS+KS++D 
Sbjct: 96  GVYKLEIPHVDGIDCVDGIAISSQCSAKILKTSSDDNGGCSIPVFQTATNEVSIKSKQDR 155

Query: 153 LCVYSFTPLSFRPRKRDDTLC---RKKAHEKES--SNSVKSSKSLLPHGTNQQISSVFDI 212
           +C+YS + LS++P  ++ +LC    KK H K+       + SK   P+         +  
Sbjct: 156 VCIYSLSALSYKPPHKNTSLCGNGGKKHHRKDEKVEKKFRDSKFFWPYLAPYWFPWPYPD 215

Query: 213 RDPRTWTSVIPLFNAPNLRKQNP 228
             P       P F  P+L   NP
Sbjct: 216 LPPLPTLPPFPSFPFPSLPFGNP 238

[Close]

BLAST of Spo04959.1 vs. TAIR (Arabidopsis)
Match: AT5G41050.1 (Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 154.5 bits (389), Expect = 8.100e-38
Identity = 73/151 (48.34%), Postives = 101/151 (66.89%), Query Frame = 1


		  
Query: 25  LAQSTPTISSRITVVGAVYCDTCLNDGFSRHSYFIPGADVHIQCKFNAISPKTAEMISFK 84
           L  S+   + +ITV+G VYCD C N+ FS HSYFIPG +V I C+FN+ S +T EMI+F 
Sbjct: 22  LKHSSAKPNGKITVMGLVYCDVCSNNSFSNHSYFIPGVEVRIICRFNSASSRTREMITFS 81

Query: 85  VNRTTDIYGVYKLEIPSVDGIDC---VDGPPIQSFCQASLLGSSSEVCNIPALKATTTEV 144
            NRTT+  G+YKL+I S++G+ C        + + CQASL+G S + CN+P  + TT +V
Sbjct: 82  ANRTTNELGLYKLDITSLEGVACAAEAKKDSLMASCQASLIGRSKDSCNVPGFRTTTEQV 141

Query: 145 SVKSRKDNLCVYSFTPLSFRPRKRDDTLCRK 173
             KS+  NLCVY FT L+FRP +++  LC K
Sbjct: 142 VFKSKISNLCVYGFTALNFRPLEKNLHLCGK 172

[Close]

BLAST of Spo04959.1 vs. TAIR (Arabidopsis)
Match: AT3G26960.1 (Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 142.1 bits (357), Expect = 4.100e-34
Identity = 71/147 (48.30%), Postives = 92/147 (62.59%), Query Frame = 1


		  
Query: 30  PTISSRITVVGAVYCDTCLNDGFSRHSYFIPGADVHIQCKFNAISPKTAEMISFKVNRTT 89
           P   + IT++G VYCD C  + FS+HSYF+ G +V I C+F A S  T E I+F  NRTT
Sbjct: 31  PKPDAEITIMGFVYCDVCSKNSFSKHSYFMSGVEVRIVCRFKAASSTTTETITFSANRTT 90

Query: 90  DIYGVYKLEIPSVDGIDCVDGPPIQSFCQASLLGS---SSEVCNIPALKATTTEVSVKSR 149
           + +G+YK+ I S   +DC D   + S CQASL+G    S   CNIP  + TT +V  KS+
Sbjct: 91  NEFGLYKVAISS---LDCADVDSLASSCQASLIGRKNFSDSSCNIPGYRTTTDQVLFKSQ 150

Query: 150 KDNLCVYSFTPLSFRPRKRDDTLCRKK 174
           + N CVY F  L+FRP KRD  LC KK
Sbjct: 151 QSNSCVYGFNALNFRPFKRDLALCGKK 174

[Close]

BLAST of Spo04959.1 vs. TAIR (Arabidopsis)
Match: AT5G15780.1 (Pollen Ole e 1 allergen and extensin family protein)

HSP 1 Score: 55.8 bits (133), Expect = 3.900e-8
Identity = 55/190 (28.95%), Postives = 85/190 (44.74%), Query Frame = 1


		  
Query: 10  FTLLFAVFFGHSL-GFLAQSTPTIS----SRITVVGAVYCDTCLNDGFSRH-SYFIPGAD 69
           F     +F G S+ G L+Q    +     S   VVG VYCDTC N  FS+  ++ I GA 
Sbjct: 9   FWFSLMIFLGISINGGLSQGQQHVMKKTRSSAVVVGTVYCDTCFNGAFSKSPNHLISGAL 68

Query: 70  VHIQCKFNAISPKTAEMISFKVNRTTDIYGVYKLEIPSVDGIDCVDGPPIQSFCQASLLG 129
           V ++C      P      SF+    TD  G +K+++P                C   LL 
Sbjct: 69  VAVECIDENSKP------SFRQEVKTDKRGEFKVKLP----FSVSKHVKKIKRCSVKLLS 128

Query: 130 SSSEVCNIPALKATTTEVSVKSRK--DNLCVYSFTPLSFRPRKRDDTLCRKKAHEKESSN 189
           SS   C+I +   +++   +KS    +N  V+S    +FRP  + + +C +K        
Sbjct: 129 SSQPYCSIASSATSSSLKRLKSNHHGENTRVFSAGFFTFRPENQPE-ICSQK------PI 181

Query: 190 SVKSSKSLLP 192
           +++ SK LLP
Sbjct: 189 NLRGSKPLLP 181

The following BLAST results are available for this feature:

BLAST of Spo04959.1 vs. NCBI nr
BLAST of Spo04959.1 vs. UniProtKB/TrEMBL
BLAST of Spo04959.1 vs. ExPASy Swiss-Prot
BLAST of Spo04959.1 vs. TAIR (Arabidopsis)

BLAST of Spo04959.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902236119\|gb\|KNA24224.1\|	1.1e-126	100.	hypothetical protein SOVF_0177...	[more]
gi\|731343052\|ref\|XP_010682699.1\|	3.2e-76	75.8	PREDICTED: leucine-rich repeat...	[more]
gi\|870855681\|gb\|KMT07397.1\|	3.2e-76	75.8	hypothetical protein BVRB_6g15...	[more]
gi\|566148756\|ref\|XP_002299330.2\|	1.6e-56	47.2	hypothetical protein POPTR_000...	[more]
gi\|567892591\|ref\|XP_006438816.1\|	6.8e-55	58.0	hypothetical protein CICLE_v10...	[more]

BLAST of Spo04959.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RZ71_SPIOL	8.0e-127	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C1P6_BETVU	2.2e-76	75.8	Uncharacterized protein OS=Bet...	[more]
B9GMP5_POPTR	1.1e-56	47.2	Uncharacterized protein OS=Pop...	[more]
V4TQB2_9ROSI	4.8e-55	58.0	Uncharacterized protein OS=Cit...	[more]
A0A067GWQ5_CITSI	1.1e-54	57.5	Uncharacterized protein OS=Cit...	[more]

BLAST of Spo04959.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo04959.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4


Match Name	E-value	Identity	Description
AT5G13140.1	1.4e-42	45.8	Pollen Ole e 1 allergen and ex...	[more]
AT5G41050.1	8.1e-38	48.3	Pollen Ole e 1 allergen and ex...	[more]
AT3G26960.1	4.1e-34	48.3	Pollen Ole e 1 allergen and ex...	[more]
AT5G15780.1	3.9e-8	28.9	Pollen Ole e 1 allergen and ex...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31614	FAMILY NOT NAMED	coord: 1..170 score: 1.4
None	No IPR available	PANTHER	PTHR31614:SF6	POLLEN OLE E 1 ALLERGEN AND EXTENSIN FAMILY PROTEIN	coord: 1..170 score: 1.4
None	No IPR available	PFAM	PF01190	Pollen_Ole_e_I	coord: 38..135 score: 2.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0016049	cell growth
biological_process	GO:0016043	cellular component organization
biological_process	GO:0048869	cellular developmental process
biological_process	GO:0060560	developmental growth involved in morphogenesis
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0010817	regulation of hormone levels
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0001510	RNA methylation
cellular_component	GO:0005739	mitochondrion

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15608	0.76	Barchart \| Table
Spo09469	0.73	Barchart \| Table
Spo10817	0.73	Barchart \| Table
Spo00754	0.73	Barchart \| Table
Spo27236	0.73	Barchart \| Table
Spo25075	0.73	Barchart \| Table
Spo16893	0.72	Barchart \| Table
Spo15092	0.71	Barchart \| Table
Spo04387	0.71	Barchart \| Table
Spo25503	0.71	Barchart \| Table
Spo21535	0.71	Barchart \| Table
Spo10820	0.71	Barchart \| Table
Spo15984	0.70	Barchart \| Table
Spo19594	0.70	Barchart \| Table
Spo14378	0.70	Barchart \| Table
Spo18801	0.70	Barchart \| Table
Spo10096	0.69	Barchart \| Table
Spo06045	0.69	Barchart \| Table
Spo21243	0.69	Barchart \| Table
Spo06718	0.68	Barchart \| Table
Spo22586	0.68	Barchart \| Table
Spo10300	0.68	Barchart \| Table
Spo26313	0.68	Barchart \| Table
Spo25175	0.68	Barchart \| Table
Spo15790	0.67	Barchart \| Table
Spo06980	0.67	Barchart \| Table
Spo18143	0.67	Barchart \| Table
Spo22903	0.67	Barchart \| Table
Spo24878	0.67	Barchart \| Table
Spo15244	0.66	Barchart \| Table
Spo13428	0.66	Barchart \| Table
Spo16392	0.66	Barchart \| Table
Spo18759	0.66	Barchart \| Table
Spo07446	0.66	Barchart \| Table
Spo23657	0.66	Barchart \| Table
Spo25439	0.66	Barchart \| Table
Spo06711	0.66	Barchart \| Table
Spo03006	0.65	Barchart \| Table
Spo08497	0.65	Barchart \| Table
Spo10450	0.65	Barchart \| Table
Spo13877	0.65	Barchart \| Table
Spo23067	0.65	Barchart \| Table
Spo24972	0.65	Barchart \| Table