Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCTTTTCCACAAACCCATCCTTCTGTATAATTCTCTCAACCATTTTTGTCCCTTTTTTTTCACTAAAAGAAATTAATTAAATTGTTTATCTCGTTCAGAAAAAGAAAAAGAAAAAGAAAAAGAAATGGGAACATCATCAAAAGGAGTAGGAGTAGGAGTAGTAGTAGTAGTTGGAGAAGAAGAGAAAATGCAGAGTGTAACAACAAAAACTGAACAAATAAAAAATCCATGTGATTTCTGCAACCAACAAACGGCTGTTATCTACTGCCGAGCTGACACCGCTAAGCTTTGCTTGTTATGCGATCAGCACGTCCACTCTGCCAATTCCCTCTCCAGAAAACACGTCCGTAATCTCCTCTGCGACGGTTGCGGAACCCAACCCGCCACCGTCAAATGCTTTACTCACAACCTCCTTTTCTGCCACGACTGCGACTTTGATCTCCACCTAAACGACTCCTACCCTCACGATCGATCCGTTGAGGGCCTCTTCAGCTGCCCCACCGCCTCTTACCTAACCACCGCCATCGGCCTCGATCCCGCCACCAAGAAACCCACAAAACCCGCCGTTGATGATGATTCACTCCTAATCATCGACGGTGACGGTGCTCACGATCCTTGGGCGGATTTGCTGGTACCAGCTCATCATAATGTCAATGTGGGACCCACTTTCCCATGGGGATTTGATGATAACGCGAATGATGATCCTGGGGTGGTTAATGGGTTAATTAAGAACTGTTTTAATGGGAAAAAACAGGAGGCGGCGATGAAGCAATATTTGCACCTTCAAAAGAAGCGCAAGGATTCTGATCAAGAGACTGGTGATATTACTAATAATCCTCTGCTTGTTGTTCCTGCTGTTGCTAATGACGATTTTATTTTAGGATTAGAGAACAATAATAATAATAATAATAATAATAATAATAATACCACCTCTAATTACGATATTAATCAAAATCAATCAATCTTGTTTCAACAACAACAACAACAGCAACAAGATGAAGCGAATTTCACATCTTTCATGGGGTTGACAACAAATAATACTATAAATAGTAATAATGCTATTAATGTGGATGGTCCTGCTGCTGGAAATGTCATGTGGGAATCTAGTCCCACCAATCCTCCTATACAGGTTTGTTTGTTTAATCTAATCTTTTTGGTTTAAAGTCTTGTTTTGAATTAATTACAATCTAAGTTTGATTTAATTAAATAGAGAATTGTGTTGGTTGCCTGATTTGGTGGAATGCTTACCTGAATTAGTAAGTATGATATTTGTCTTCAGTAGGTTTACCTGATTTAGTAAGATTGTTAATTTATGTTTTGTAGACTTTCCTGCTTGGGTAAGAATGATATTTATCTGTGTAGAATGAGATCAGAACACCAATTTAGCTAAGCTTCCCTGCTCGATCTTTTGAAGTAGTAAATGTAATTTTCGAGCGTTCTTTGATCTTACTCTGTGACTCAGGAGTGATTTCAATTATACTCCGTAATTCGTATATAAACTAAGGTGCTTTTTTTGTTTTTGTATGAACGATTAAATTAAAAAGTTAGACAAATGCAATAGTTCATGGAGGTCGTCTATCCTCCAATAATACATCAGTAACAAACCCTCCCCTCTTTCTTAAAATGAGAATTGGATACTTAAGTACTACCTTATCCAGAATTGAATAGTTTGATCACATTTATATCATTGAGCACTTGGTATTTTAGAATGTCCGGAAAAAGTTTTCACCTTGGCGAGTAAAGTAGTAGTGATTTATGAATAGACTCGACTATATGCTTCGATTTGTTGATCATTAGTTGCAATCCTTAAATCTTTACCAATTAAGCAGGTTGTCATCCACTAACAATCCTGACCTGTAATCGTACAGAATGCGGTTATCTTGTGTACTAGCTAGCTAATTAAGGCCATTTGTACTTAGGATTTGTCTATTGATTGATCTATCACATTCACATTGTAGTGGTGTTAATGTTTTTCTTGGTTATTACTTGAACAATAAGTGAACAAGTAATTATTTGATTACTCAATTGCTCTAGTGAATAATGAATTAACGATGTGTATTTTGAGTGGTTCAGATATGGGATTTCAACTCAGGGAGAATGAGGGATCATGAGGAAGGCGGAAGGTTAAATATTGGGTACCGTGAAAGTGAAGTTGGTTTTATGATCAACACTAACAGCTACAACAACTCACTTGTACCAGAAACTGGTTTGCCAACCTCAAATCTCTATGACATCAATTGCTCGGATGATATCCGAATGTTTAATGTATGTAACCCAACCCCCTTATGAATTATATACTGTAATTGACATATAGTAGTTTGTATGTTACTGAAATTGGGTATTGTTATTTGTAAGTACAGAGTAAGATGCAAAATTCAGCAGTGAGTCAGGGTCCAGCAACACCGGAGAACAACAATGTGGCTATAATAAGGCCATCATCGGGTTCAGTTTTTGGTAAAAATAAAAGCATAGATATTCATTTTATGGATCAAACTGTTTTCCTTGGAGGTGAGAATGGAGTAAGAACAGAGGCCGACATGGAAATGCTTGCACAAAATAGAGGCAATGCCATGCAACGTTACAAGGAGAAGAAGAAGACAAGAAGGTAGCTAGCTACACATTTCTTAATTACTTGATTTTATGATCTAGATTCTAGACTAAGTGACTAACTCTAGTTCAATTAATCTGTTGAATATATGAATAGATATGAGAAGCATATACGTTATGAGTCGAGGAAGGCAAGGGCTGATACACGTAAGAGAGTCAAAGGACGATTTGTTAAGATCAATGGTGCTTCATCTGATCAATGGTCTCCTACTGATACTGTGTAAATATTTTCAAGATCGACTTGTTTTTCTTCTTTTTCCGAACAAGTTTTGTCTACTTCATCATTCTTTTATCCAAATCCAATACAGAATGGTGACGTTTCACACGCCATTTTTAGTTCTTGTAACTCTTATACCCAGCCATGTATTAGCTAGCTAGCTGTAAAAATAATCATAGAAAATAAGGTAAGGAATTCACTGCTAATTTAAGAGCAGTAGAATTTGAATAAAGTACATTTGCTTCTGCTAATAAACAACTTGTTAG CCTTTTCCACAAACCCATCCTTCTGTATAATTCTCTCAACCATTTTTGTCCCTTTTTTTTCACTAAAAGAAATTAATTAAATTGTTTATCTCGTTCAGAAAAAGAAAAAGAAAAAGAAAAAGAAATGGGAACATCATCAAAAGGAGTAGGAGTAGGAGTAGTAGTAGTAGTTGGAGAAGAAGAGAAAATGCAGAGTGTAACAACAAAAACTGAACAAATAAAAAATCCATGTGATTTCTGCAACCAACAAACGGCTGTTATCTACTGCCGAGCTGACACCGCTAAGCTTTGCTTGTTATGCGATCAGCACGTCCACTCTGCCAATTCCCTCTCCAGAAAACACGTCCGTAATCTCCTCTGCGACGGTTGCGGAACCCAACCCGCCACCGTCAAATGCTTTACTCACAACCTCCTTTTCTGCCACGACTGCGACTTTGATCTCCACCTAAACGACTCCTACCCTCACGATCGATCCGTTGAGGGCCTCTTCAGCTGCCCCACCGCCTCTTACCTAACCACCGCCATCGGCCTCGATCCCGCCACCAAGAAACCCACAAAACCCGCCGTTGATGATGATTCACTCCTAATCATCGACGGTGACGGTGCTCACGATCCTTGGGCGGATTTGCTGGTACCAGCTCATCATAATGTCAATGTGGGACCCACTTTCCCATGGGGATTTGATGATAACGCGAATGATGATCCTGGGGTGGTTAATGGGTTAATTAAGAACTGTTTTAATGGGAAAAAACAGGAGGCGGCGATGAAGCAATATTTGCACCTTCAAAAGAAGCGCAAGGATTCTGATCAAGAGACTGGTGATATTACTAATAATCCTCTGCTTGTTGTTCCTGCTGTTGCTAATGACGATTTTATTTTAGGATTAGAGAACAATAATAATAATAATAATAATAATAATAATAATACCACCTCTAATTACGATATTAATCAAAATCAATCAATCTTGTTTCAACAACAACAACAACAGCAACAAGATGAAGCGAATTTCACATCTTTCATGGGGTTGACAACAAATAATACTATAAATAGTAATAATGCTATTAATGTGGATGGTCCTGCTGCTGGAAATGTCATGTGGGAATCTAGTCCCACCAATCCTCCTATACAGATATGGGATTTCAACTCAGGGAGAATGAGGGATCATGAGGAAGGCGGAAGGTTAAATATTGGGTACCGTGAAAGTGAAGTTGGTTTTATGATCAACACTAACAGCTACAACAACTCACTTGTACCAGAAACTGGTTTGCCAACCTCAAATCTCTATGACATCAATTGCTCGGATGATATCCGAATGTTTAATAGTAAGATGCAAAATTCAGCAGTGAGTCAGGGTCCAGCAACACCGGAGAACAACAATGTGGCTATAATAAGGCCATCATCGGGTTCAGTTTTTGGTAAAAATAAAAGCATAGATATTCATTTTATGGATCAAACTGTTTTCCTTGGAGGTGAGAATGGAGTAAGAACAGAGGCCGACATGGAAATGCTTGCACAAAATAGAGGCAATGCCATGCAACGTTACAAGGAGAAGAAGAAGACAAGAAGATATGAGAAGCATATACGTTATGAGTCGAGGAAGGCAAGGGCTGATACACGTAAGAGAGTCAAAGGACGATTTGTTAAGATCAATGGTGCTTCATCTGATCAATGGTCTCCTACTGATACTGTGTAAATATTTTCAAGATCGACTTGTTTTTCTTCTTTTTCCGAACAAGTTTTGTCTACTTCATCATTCTTTTATCCAAATCCAATACAGAATGGTGACGTTTCACACGCCATTTTTAGTTCTTGTAACTCTTATACCCAGCCATGTATTAGCTAGCTAGCTGTAAAAATAATCATAGAAAATAAGGTAAGGAATTCACTGCTAATTTAAGAGCAGTAGAATTTGAATAAAGTACATTTGCTTCTGCTAATAAACAACTTGTTAG ATGGGAACATCATCAAAAGGAGTAGGAGTAGGAGTAGTAGTAGTAGTTGGAGAAGAAGAGAAAATGCAGAGTGTAACAACAAAAACTGAACAAATAAAAAATCCATGTGATTTCTGCAACCAACAAACGGCTGTTATCTACTGCCGAGCTGACACCGCTAAGCTTTGCTTGTTATGCGATCAGCACGTCCACTCTGCCAATTCCCTCTCCAGAAAACACGTCCGTAATCTCCTCTGCGACGGTTGCGGAACCCAACCCGCCACCGTCAAATGCTTTACTCACAACCTCCTTTTCTGCCACGACTGCGACTTTGATCTCCACCTAAACGACTCCTACCCTCACGATCGATCCGTTGAGGGCCTCTTCAGCTGCCCCACCGCCTCTTACCTAACCACCGCCATCGGCCTCGATCCCGCCACCAAGAAACCCACAAAACCCGCCGTTGATGATGATTCACTCCTAATCATCGACGGTGACGGTGCTCACGATCCTTGGGCGGATTTGCTGGTACCAGCTCATCATAATGTCAATGTGGGACCCACTTTCCCATGGGGATTTGATGATAACGCGAATGATGATCCTGGGGTGGTTAATGGGTTAATTAAGAACTGTTTTAATGGGAAAAAACAGGAGGCGGCGATGAAGCAATATTTGCACCTTCAAAAGAAGCGCAAGGATTCTGATCAAGAGACTGGTGATATTACTAATAATCCTCTGCTTGTTGTTCCTGCTGTTGCTAATGACGATTTTATTTTAGGATTAGAGAACAATAATAATAATAATAATAATAATAATAATAATACCACCTCTAATTACGATATTAATCAAAATCAATCAATCTTGTTTCAACAACAACAACAACAGCAACAAGATGAAGCGAATTTCACATCTTTCATGGGGTTGACAACAAATAATACTATAAATAGTAATAATGCTATTAATGTGGATGGTCCTGCTGCTGGAAATGTCATGTGGGAATCTAGTCCCACCAATCCTCCTATACAGATATGGGATTTCAACTCAGGGAGAATGAGGGATCATGAGGAAGGCGGAAGGTTAAATATTGGGTACCGTGAAAGTGAAGTTGGTTTTATGATCAACACTAACAGCTACAACAACTCACTTGTACCAGAAACTGGTTTGCCAACCTCAAATCTCTATGACATCAATTGCTCGGATGATATCCGAATGTTTAATAGTAAGATGCAAAATTCAGCAGTGAGTCAGGGTCCAGCAACACCGGAGAACAACAATGTGGCTATAATAAGGCCATCATCGGGTTCAGTTTTTGGTAAAAATAAAAGCATAGATATTCATTTTATGGATCAAACTGTTTTCCTTGGAGGTGAGAATGGAGTAAGAACAGAGGCCGACATGGAAATGCTTGCACAAAATAGAGGCAATGCCATGCAACGTTACAAGGAGAAGAAGAAGACAAGAAGATATGAGAAGCATATACGTTATGAGTCGAGGAAGGCAAGGGCTGATACACGTAAGAGAGTCAAAGGACGATTTGTTAAGATCAATGGTGCTTCATCTGATCAATGGTCTCCTACTGATACTGTGTAA MGTSSKGVGVGVVVVVGEEEKMQSVTTKTEQIKNPCDFCNQQTAVIYCRADTAKLCLLCDQHVHSANSLSRKHVRNLLCDGCGTQPATVKCFTHNLLFCHDCDFDLHLNDSYPHDRSVEGLFSCPTASYLTTAIGLDPATKKPTKPAVDDDSLLIIDGDGAHDPWADLLVPAHHNVNVGPTFPWGFDDNANDDPGVVNGLIKNCFNGKKQEAAMKQYLHLQKKRKDSDQETGDITNNPLLVVPAVANDDFILGLENNNNNNNNNNNNTTSNYDINQNQSILFQQQQQQQQDEANFTSFMGLTTNNTINSNNAINVDGPAAGNVMWESSPTNPPIQIWDFNSGRMRDHEEGGRLNIGYRESEVGFMINTNSYNNSLVPETGLPTSNLYDINCSDDIRMFNSKMQNSAVSQGPATPENNNVAIIRPSSGSVFGKNKSIDIHFMDQTVFLGGENGVRTEADMEMLAQNRGNAMQRYKEKKKTRRYEKHIRYESRKARADTRKRVKGRFVKINGASSDQWSPTDTV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo04967.1 vs. NCBI nr
Match: gi|902236104|gb|KNA24209.1| (hypothetical protein SOVF_017570 [Spinacia oleracea]) HSP 1 Score: 1037.3 bits (2681), Expect = 8.900e-300 Identity = 520/523 (99.43%), Postives = 520/523 (99.43%), Query Frame = 1
BLAST of Spo04967.1 vs. NCBI nr
Match: gi|731343010|ref|XP_010682677.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 15 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 467.2 bits (1201), Expect = 3.700e-128 Identity = 284/538 (52.79%), Postives = 358/538 (66.54%), Query Frame = 1
BLAST of Spo04967.1 vs. NCBI nr
Match: gi|645231341|ref|XP_008222351.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 15-like [Prunus mume]) HSP 1 Score: 309.7 bits (792), Expect = 9.800e-81 Identity = 213/504 (42.26%), Postives = 286/504 (56.75%), Query Frame = 1
BLAST of Spo04967.1 vs. NCBI nr
Match: gi|971578959|ref|XP_015158845.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 14-like [Solanum tuberosum]) HSP 1 Score: 302.0 bits (772), Expect = 2.000e-78 Identity = 211/506 (41.70%), Postives = 281/506 (55.53%), Query Frame = 1
BLAST of Spo04967.1 vs. NCBI nr
Match: gi|596136129|ref|XP_007222337.1| (hypothetical protein PRUPE_ppa004756mg [Prunus persica]) HSP 1 Score: 301.6 bits (771), Expect = 2.700e-78 Identity = 214/513 (41.72%), Postives = 284/513 (55.36%), Query Frame = 1
BLAST of Spo04967.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ57_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_017570 PE=4 SV=1) HSP 1 Score: 1037.3 bits (2681), Expect = 6.200e-300 Identity = 520/523 (99.43%), Postives = 520/523 (99.43%), Query Frame = 1
BLAST of Spo04967.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EVW4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g149970 PE=4 SV=1) HSP 1 Score: 467.2 bits (1201), Expect = 2.600e-128 Identity = 284/538 (52.79%), Postives = 358/538 (66.54%), Query Frame = 1
BLAST of Spo04967.1 vs. UniProtKB/TrEMBL
Match: M1CDV4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400025414 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 1.400e-78 Identity = 211/506 (41.70%), Postives = 281/506 (55.53%), Query Frame = 1
BLAST of Spo04967.1 vs. UniProtKB/TrEMBL
Match: M5XDL7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa004756mg PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 1.900e-78 Identity = 214/513 (41.72%), Postives = 284/513 (55.36%), Query Frame = 1
BLAST of Spo04967.1 vs. UniProtKB/TrEMBL
Match: A0A0V0ID81_SOLCH (Putative zinc finger protein CONSTANS-LIKE 15-like (Fragment) OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 9.200e-78 Identity = 210/506 (41.50%), Postives = 281/506 (55.53%), Query Frame = 1
BLAST of Spo04967.1 vs. ExPASy Swiss-Prot
Match: COL14_ARATH (Zinc finger protein CONSTANS-LIKE 14 OS=Arabidopsis thaliana GN=COL14 PE=2 SV=2) HSP 1 Score: 137.5 bits (345), Expect = 4.200e-31 Identity = 73/155 (47.10%), Postives = 95/155 (61.29%), Query Frame = 1
BLAST of Spo04967.1 vs. ExPASy Swiss-Prot
Match: COL15_ARATH (Zinc finger protein CONSTANS-LIKE 15 OS=Arabidopsis thaliana GN=COL15 PE=2 SV=1) HSP 1 Score: 135.2 bits (339), Expect = 2.100e-30 Identity = 69/146 (47.26%), Postives = 93/146 (63.70%), Query Frame = 1
BLAST of Spo04967.1 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1) HSP 1 Score: 109.8 bits (273), Expect = 9.300e-23 Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 1
BLAST of Spo04967.1 vs. ExPASy Swiss-Prot
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1) HSP 1 Score: 104.8 bits (260), Expect = 3.000e-21 Identity = 47/99 (47.47%), Postives = 58/99 (58.59%), Query Frame = 1
BLAST of Spo04967.1 vs. ExPASy Swiss-Prot
Match: COL9_ARATH (Zinc finger protein CONSTANS-LIKE 9 OS=Arabidopsis thaliana GN=COL9 PE=2 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 1.300e-19 Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = 1
BLAST of Spo04967.1 vs. TAIR (Arabidopsis)
Match: AT2G33500.1 (B-box type zinc finger protein with CCT domain) HSP 1 Score: 137.5 bits (345), Expect = 2.300e-32 Identity = 73/155 (47.10%), Postives = 95/155 (61.29%), Query Frame = 1
BLAST of Spo04967.1 vs. TAIR (Arabidopsis)
Match: AT1G28050.1 (B-box type zinc finger protein with CCT domain) HSP 1 Score: 135.2 bits (339), Expect = 1.200e-31 Identity = 69/146 (47.26%), Postives = 93/146 (63.70%), Query Frame = 1
BLAST of Spo04967.1 vs. TAIR (Arabidopsis)
Match: AT2G47890.1 (B-box type zinc finger protein with CCT domain) HSP 1 Score: 109.8 bits (273), Expect = 5.200e-24 Identity = 53/136 (38.97%), Postives = 76/136 (55.88%), Query Frame = 1
BLAST of Spo04967.1 vs. TAIR (Arabidopsis)
Match: AT1G68190.1 (B-box zinc finger family protein) HSP 1 Score: 104.8 bits (260), Expect = 1.700e-22 Identity = 47/99 (47.47%), Postives = 58/99 (58.59%), Query Frame = 1
BLAST of Spo04967.1 vs. TAIR (Arabidopsis)
Match: AT3G07650.1 (CONSTANS-like 9) HSP 1 Score: 99.4 bits (246), Expect = 7.100e-21 Identity = 53/142 (37.32%), Postives = 79/142 (55.63%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo04967.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo04967.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo04967.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo04967.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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