Spo04980 (gene) | SpinachBase

Overview


Name	Spo04980
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	PsbP domain-containing protein 6
Location	SpoScf_05189 : 5064 .. 6977 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATGCCACATCTGCTGACAACAGTCTCCTTTCTGAGACTATCTCTCAGCCAACCAATCCCAACTGAAATTAAGACCTCATCCAAAACCTTCATATTCTCTCTCTCCTCATTCTCTGCCTCTGTGACACGAACATGGCTACTGCTTCACTAACACAACTGGCCCTCACTTCATCTTCATCAACCTCCATTAAATCCAAATTAACAATACCATCATTGTTACAGTTACATGCTCAAAAACAAGAACAACATGGAAAGCTAGTAATAAGAAGAGACTTACTAACGGGTATCTCTCTCCTTCCACTTGTACTGAGTGTCCCTCCTCCTTCACTAGCTAGAGATGTTGATGTTGGTTCTTTTTTGCCACCTTCGCCTTCTGATCCTTCAATGGTTCTTTTCAAAGCTACTTCTAAAGACACCCCTGCTCTTCGCGCAGGTCAGTCTGTTTCTGTTACTGATGATTGATTCATTAATTGTTAATGGTAACTAGTTTAATTTTGATTGAATTGTAGCATTGAAAGCAAGGTTATAGTGATGGTTTTGCAGGGAATGTAGCGCCTTACCAATTTGTATTGCCACCAACATGGAAGCAATTGCGAATAGCAAACATACTGTCTGGGAATTATTGCCAACCAAAGTGTGCAGAACCATGGATTGAAGTCAAATTTGAAGATGAGAAACAAGGGAAGTTACAAGTTGTAGCTTCCCCTCTCATCCGTCTGACAAACAAGCTTAAAGCAACCATTGAAGAAATTGGAAGCCCTGAGAAGCTGATTGCTTCCCTCGGACCTTTTGTTACCGGCAACACTCTTGATCCAGATGAACTCATTGAGACTTCTGTTGAGAAGCTTGGTGATCAGACGGTATGATCTCTTCTACTCATCATATTCTTAGGTCTTGAACTGAACTCAACTGAATGCTCATGAACTGAACTTAACTAAACTGAACTTAACTTAATTTAACCGAAACTGCAGTTAAGCCAAAAAGAACAGCTCAATCATTTGCTTATTTTGAGAGGTTTTGTTGTGAATTGATATTGATTTCCCTTATCTAATCTGAACTTACTTATTCGCCTTATCTAAACTTTTTCTTAACCGGTGAAAAGAACATAGCCTCATAGTTATCACCAGTTTAACTTGGTTTATCCTAGTGTCGAATACCAGTTGTTGGTAGTATAACTAGGCCATTTGTGTTTCTGGTGGTTGCAGTACTACAAATATGTTTTGGAGACACCATATGCTCTAACAGGAACGCACAATATCGCCAAAGCAACAGCAAAAGGAAGCACAGTCGTCTTAGTTGTTGCCAGTGCCAATGATAAACAGTGGCAGACCTCCCAGAAAACTCTGCAAGCTATAGTAGACTCTTTTCAAGTTTAGTTATCTCCTGAATCTTGTTATTATGTATGCTACTGTAAATCTGTAATACTACGAAGGACTATAATTTAACAGATCAGATTCTTCATTCTTGTGTGCAGTGAAGAAATTGTGAAACACCCTGTCATAATGTGATGTGCTTCAGGTGCCAAAATACACCCAAGCCGAAATATCACAAATGCCGCCCCATCCTAGGCCCCATCCTAACCATCGCAAAGAAAAGTACAACCGAAATCCTTTTATCTGGCATTAATATGAACCGCGTGCATCTAAAGCGTCTTTAACCAAGATCAACATAGTTGTCTGAAGGATAGAGCAGTAGCATGATGAACCAAAATATGAACCTTTATCAGTAGAAATACAAATTTAATAAAGTGATGCACATATATCACATTAGTACATTACACATCATAAGTTACAAGCCATCAACGTTCAGAAACGCATCCTCGGATAGGCCAAATGATGCGTGTTAGTACACCAAGATCTCAACATTAAGATAAGAACCCAGATTACAAAGGTTTCTTAGCAGAGGAAAGACCA

mRNA sequence

AAATGCCACATCTGCTGACAACAGTCTCCTTTCTGAGACTATCTCTCAGCCAACCAATCCCAACTGAAATTAAGACCTCATCCAAAACCTTCATATTCTCTCTCTCCTCATTCTCTGCCTCTGTGACACGAACATGGCTACTGCTTCACTAACACAACTGGCCCTCACTTCATCTTCATCAACCTCCATTAAATCCAAATTAACAATACCATCATTGTTACAGTTACATGCTCAAAAACAAGAACAACATGGAAAGCTAGTAATAAGAAGAGACTTACTAACGGGTATCTCTCTCCTTCCACTTGTACTGAGTGTCCCTCCTCCTTCACTAGCTAGAGATGTTGATGTTGGTTCTTTTTTGCCACCTTCGCCTTCTGATCCTTCAATGGTTCTTTTCAAAGCTACTTCTAAAGACACCCCTGCTCTTCGCGCAGGGAATGTAGCGCCTTACCAATTTGTATTGCCACCAACATGGAAGCAATTGCGAATAGCAAACATACTGTCTGGGAATTATTGCCAACCAAAGTGTGCAGAACCATGGATTGAAGTCAAATTTGAAGATGAGAAACAAGGGAAGTTACAAGTTGTAGCTTCCCCTCTCATCCGTCTGACAAACAAGCTTAAAGCAACCATTGAAGAAATTGGAAGCCCTGAGAAGCTGATTGCTTCCCTCGGACCTTTTGTTACCGGCAACACTCTTGATCCAGATGAACTCATTGAGACTTCTGTTGAGAAGCTTGGTGATCAGACGTACTACAAATATGTTTTGGAGACACCATATGCTCTAACAGGAACGCACAATATCGCCAAAGCAACAGCAAAAGGAAGCACAGTCGTCTTAGTTGTTGCCAGTGCCAATGATAAACAGTGGCAGACCTCCCAGAAAACTCTGCAAGCTATAGTAGACTCTTTTCAAGTTTAGTTATCTCCTGAATCTTGTTATTATGTATGCTACTGTAAATCTGTAATACTACGAAGGACTATAATTTAACAGATCAGATTCTTCATTCTTGTGTGCAGTGAAGAAATTGTGAAACACCCTGTCATAATGTGATGTGCTTCAGGTGCCAAAATACACCCAAGCCGAAATATCACAAATGCCGCCCCATCCTAGGCCCCATCCTAACCATCGCAAAGAAAAGTACAACCGAAATCCTTTTATCTGGCATTAATATGAACCGCGTGCATCTAAAGCGTCTTTAACCAAGATCAACATAGTTGTCTGAAGGATAGAGCAGTAGCATGATGAACCAAAATATGAACCTTTATCAGTAGAAATACAAATTTAATAAAGTGATGCACATATATCACATTAGTACATTACACATCATAAGTTACAAGCCATCAACGTTCAGAAACGCATCCTCGGATAGGCCAAATGATGCGTGTTAGTACACCAAGATCTCAACATTAAGATAAGAACCCAGATTACAAAGGTTTCTTAGCAGAGGAAAGACCA

Coding sequence (CDS)

ATGGCTACTGCTTCACTAACACAACTGGCCCTCACTTCATCTTCATCAACCTCCATTAAATCCAAATTAACAATACCATCATTGTTACAGTTACATGCTCAAAAACAAGAACAACATGGAAAGCTAGTAATAAGAAGAGACTTACTAACGGGTATCTCTCTCCTTCCACTTGTACTGAGTGTCCCTCCTCCTTCACTAGCTAGAGATGTTGATGTTGGTTCTTTTTTGCCACCTTCGCCTTCTGATCCTTCAATGGTTCTTTTCAAAGCTACTTCTAAAGACACCCCTGCTCTTCGCGCAGGGAATGTAGCGCCTTACCAATTTGTATTGCCACCAACATGGAAGCAATTGCGAATAGCAAACATACTGTCTGGGAATTATTGCCAACCAAAGTGTGCAGAACCATGGATTGAAGTCAAATTTGAAGATGAGAAACAAGGGAAGTTACAAGTTGTAGCTTCCCCTCTCATCCGTCTGACAAACAAGCTTAAAGCAACCATTGAAGAAATTGGAAGCCCTGAGAAGCTGATTGCTTCCCTCGGACCTTTTGTTACCGGCAACACTCTTGATCCAGATGAACTCATTGAGACTTCTGTTGAGAAGCTTGGTGATCAGACGTACTACAAATATGTTTTGGAGACACCATATGCTCTAACAGGAACGCACAATATCGCCAAAGCAACAGCAAAAGGAAGCACAGTCGTCTTAGTTGTTGCCAGTGCCAATGATAAACAGTGGCAGACCTCCCAGAAAACTCTGCAAGCTATAGTAGACTCTTTTCAAGTTTAG

Protein sequence

MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLSVPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQLRIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLIASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLVVASANDKQWQTSQKTLQAIVDSFQV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo04980.1	Spo04980.1	mRNA

Homology

[Close]

BLAST of Spo04980.1 vs. NCBI nr
Match: gi|902146869|gb|KNA05109.1| (hypothetical protein SOVF_193440 [Spinacia oleracea])

HSP 1 Score: 503.8 bits (1296), Expect = 1.800e-139
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS 60
           MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS
Sbjct: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS 60

Query: 61  VPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQLRIA 120
           VPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQLRIA
Sbjct: 61  VPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQLRIA 120

Query: 121 NILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLIASL 180
           NILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLIASL
Sbjct: 121 NILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLIASL 180

Query: 181 GPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLVVAS 240
           GPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLVVAS
Sbjct: 181 GPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLVVAS 240

Query: 241 ANDKQWQTSQKTLQAIVDSFQV 263
           ANDKQWQTSQKTLQAIVDSFQV
Sbjct: 241 ANDKQWQTSQKTLQAIVDSFQV 262

[Close]

BLAST of Spo04980.1 vs. NCBI nr
Match: gi|731324638|ref|XP_010673078.1| (PREDICTED: psbP domain-containing protein 6, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 409.1 bits (1050), Expect = 6.000e-111
Identity = 216/265 (81.51%), Postives = 237/265 (89.43%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSST-SIKSKL--TIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPL 60
           MATASLTQL LTSSS+T S KS    T P  LQLHAQKQEQ  KL+IRRDLL G+S LPL
Sbjct: 1   MATASLTQLPLTSSSTTTSTKSNFSATKPLSLQLHAQKQEQR-KLIIRRDLLRGLSFLPL 60

Query: 61  VLSVPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQL 120
           V+ V P S A++++VGS+LP S SDPS VLFKA++KDTPALRAGNVAPYQFVLPPTWKQL
Sbjct: 61  VVKVSP-SQAKEIEVGSYLPTSSSDPSFVLFKASTKDTPALRAGNVAPYQFVLPPTWKQL 120

Query: 121 RIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLI 180
           RIANILSGNYCQPKCAEPW+EVKFEDEKQGK+QV+ASPLIRLTNK  ATIEEIGSPEKLI
Sbjct: 121 RIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVIASPLIRLTNKPNATIEEIGSPEKLI 180

Query: 181 ASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLV 240
           ASLGPFVTGN+ DPDEL+ETS+EK GDQTYYKY LETP+ALTGTHN+AKATAKGSTVVL 
Sbjct: 181 ASLGPFVTGNSYDPDELLETSIEKFGDQTYYKYALETPFALTGTHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWQTSQKTLQAIVDSFQV 263
           VASAN+KQWQTSQKTLQ I+DSFQV
Sbjct: 241 VASANEKQWQTSQKTLQTILDSFQV 263

[Close]

BLAST of Spo04980.1 vs. NCBI nr
Match: gi|1012352898|gb|KYP64086.1| (hypothetical protein KK1_018674 [Cajanus cajan])

HSP 1 Score: 375.2 bits (962), Expect = 9.500e-101
Identity = 199/268 (74.25%), Postives = 225/268 (83.96%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQ--EQHGKLVIRRDLLTGI---SLL 60
           MAT   T L   + SS+S  S+LT    L+  A +    QH     RR+ L GI   +LL
Sbjct: 1   MATLPFTSLCPITVSSSSSSSRLTALHALRASASEPVLSQHTP---RREFLKGIGLQALL 60

Query: 61  PLVL-SVPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTW 120
           PLVL    PPSLAR+V+VGSFLPPSPSDPS VLFKA+ KDTPALRAGNV PY+F+LPPTW
Sbjct: 61  PLVLLREAPPSLAREVEVGSFLPPSPSDPSFVLFKASPKDTPALRAGNVQPYKFILPPTW 120

Query: 121 KQLRIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPE 180
           KQ R+ANILSGNYCQPKCAEPW+EVKFEDEKQGK+QVVASPLIRLTNK  ATIE+IGSPE
Sbjct: 121 KQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPE 180

Query: 181 KLIASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTV 240
           K+IASLGPFVTGNTLDPDEL+ETSVEKLGDQTYYKYVLETPYALTGTHN+AKATAKG+TV
Sbjct: 181 KVIASLGPFVTGNTLDPDELLETSVEKLGDQTYYKYVLETPYALTGTHNLAKATAKGNTV 240

Query: 241 VLVVASANDKQWQTSQKTLQAIVDSFQV 263
           VL V SANDKQWQTS++TL+A++DSF+V
Sbjct: 241 VLFVVSANDKQWQTSEETLKAVLDSFEV 265

[Close]

BLAST of Spo04980.1 vs. NCBI nr
Match: gi|734349743|gb|KHN12177.1| (PsbP domain-containing protein 6, chloroplastic [Glycine soja])

HSP 1 Score: 374.8 bits (961), Expect = 1.200e-100
Identity = 190/265 (71.70%), Postives = 222/265 (83.77%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS 60
           M T + T L   + SS S  SK +    ++     +    +  +RR+ L G++L+PL L 
Sbjct: 1   MTTFAFTSLLPLTVSSPSSSSKFSAFHAIRASLDSEYVASRHTLRREFLKGVALMPLPLV 60

Query: 61  V---PPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQL 120
           V   PPPS AR+V+VGSFLPPSPSDPS VLFKAT KDTPALRAGNV PY+F+LPPTWKQ 
Sbjct: 61  VMREPPPSHAREVEVGSFLPPSPSDPSFVLFKATPKDTPALRAGNVQPYKFILPPTWKQA 120

Query: 121 RIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLI 180
           R+ANILSGNYCQPKCAEPW+EVKFEDEKQGK+QVVASPLIRLTNK  A+IE+IGSPEKLI
Sbjct: 121 RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLI 180

Query: 181 ASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLV 240
           ASLGPFVTGNTLDPDEL+ETSVEK+GDQTYYKYVLETPYALTGTHN+AKATAKG+TVVL 
Sbjct: 181 ASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLF 240

Query: 241 VASANDKQWQTSQKTLQAIVDSFQV 263
           V SANDKQWQTS++TL+A+++SF+V
Sbjct: 241 VVSANDKQWQTSEETLKAVLNSFEV 265

[Close]

BLAST of Spo04980.1 vs. NCBI nr
Match: gi|720097161|ref|XP_010247230.1| (PREDICTED: psbP domain-containing protein 6, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 372.5 bits (955), Expect = 6.200e-100
Identity = 193/272 (70.96%), Postives = 223/272 (81.99%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHA----------QKQEQHGKLVIRRDLLT 60
           MATASLT L+   S+S S KS   +    + H+          +  +   ++  RR+ L 
Sbjct: 49  MATASLTPLSPVFSASNSSKSPSILSFSSEFHSVSTSSTKISGEFNQCRKQIARRREFLK 108

Query: 61  GISLLPLVLSVPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVL 120
           GI+L+P +   PP S AR+V+VGSFLPPS SDPS V+FKATSKDTPALRAGNV PY+F+L
Sbjct: 109 GIALVPFIWREPPISEAREVEVGSFLPPSSSDPSFVVFKATSKDTPALRAGNVQPYEFIL 168

Query: 121 PPTWKQLRIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEI 180
           PPTWKQ R+ANILSGNYCQPKCAEPW+EVKFEDEKQGK+QVVASPLIRLTNK  ATIE+I
Sbjct: 169 PPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDI 228

Query: 181 GSPEKLIASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAK 240
           GSPEK+IASLGPFVTGNT DPDELIETSVEK GDQTYY YVLETPYALTG+HN+AKATAK
Sbjct: 229 GSPEKVIASLGPFVTGNTYDPDELIETSVEKRGDQTYYTYVLETPYALTGSHNLAKATAK 288

Query: 241 GSTVVLVVASANDKQWQTSQKTLQAIVDSFQV 263
           G+TV+L VASANDKQWQTSQ+TL+AI+DSFQV
Sbjct: 289 GNTVILFVASANDKQWQTSQQTLKAILDSFQV 320

[Close]

BLAST of Spo04980.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCX3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193440 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 1.200e-139
Identity = 262/262 (100.00%), Postives = 262/262 (100.00%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS 60
           MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS
Sbjct: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS 60

Query: 61  VPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQLRIA 120
           VPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQLRIA
Sbjct: 61  VPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQLRIA 120

Query: 121 NILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLIASL 180
           NILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLIASL
Sbjct: 121 NILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLIASL 180

Query: 181 GPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLVVAS 240
           GPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLVVAS
Sbjct: 181 GPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLVVAS 240

Query: 241 ANDKQWQTSQKTLQAIVDSFQV 263
           ANDKQWQTSQKTLQAIVDSFQV
Sbjct: 241 ANDKQWQTSQKTLQAIVDSFQV 262

[Close]

BLAST of Spo04980.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNY4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g063420 PE=4 SV=1)

HSP 1 Score: 409.1 bits (1050), Expect = 4.100e-111
Identity = 216/265 (81.51%), Postives = 237/265 (89.43%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSST-SIKSKL--TIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPL 60
           MATASLTQL LTSSS+T S KS    T P  LQLHAQKQEQ  KL+IRRDLL G+S LPL
Sbjct: 1   MATASLTQLPLTSSSTTTSTKSNFSATKPLSLQLHAQKQEQR-KLIIRRDLLRGLSFLPL 60

Query: 61  VLSVPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQL 120
           V+ V P S A++++VGS+LP S SDPS VLFKA++KDTPALRAGNVAPYQFVLPPTWKQL
Sbjct: 61  VVKVSP-SQAKEIEVGSYLPTSSSDPSFVLFKASTKDTPALRAGNVAPYQFVLPPTWKQL 120

Query: 121 RIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLI 180
           RIANILSGNYCQPKCAEPW+EVKFEDEKQGK+QV+ASPLIRLTNK  ATIEEIGSPEKLI
Sbjct: 121 RIANILSGNYCQPKCAEPWVEVKFEDEKQGKIQVIASPLIRLTNKPNATIEEIGSPEKLI 180

Query: 181 ASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLV 240
           ASLGPFVTGN+ DPDEL+ETS+EK GDQTYYKY LETP+ALTGTHN+AKATAKGSTVVL 
Sbjct: 181 ASLGPFVTGNSYDPDELLETSIEKFGDQTYYKYALETPFALTGTHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWQTSQKTLQAIVDSFQV 263
           VASAN+KQWQTSQKTLQ I+DSFQV
Sbjct: 241 VASANEKQWQTSQKTLQTILDSFQV 263

[Close]

BLAST of Spo04980.1 vs. UniProtKB/TrEMBL
Match: A0A151TAN4_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_018674 PE=4 SV=1)

HSP 1 Score: 375.2 bits (962), Expect = 6.600e-101
Identity = 199/268 (74.25%), Postives = 225/268 (83.96%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQ--EQHGKLVIRRDLLTGI---SLL 60
           MAT   T L   + SS+S  S+LT    L+  A +    QH     RR+ L GI   +LL
Sbjct: 1   MATLPFTSLCPITVSSSSSSSRLTALHALRASASEPVLSQHTP---RREFLKGIGLQALL 60

Query: 61  PLVL-SVPPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTW 120
           PLVL    PPSLAR+V+VGSFLPPSPSDPS VLFKA+ KDTPALRAGNV PY+F+LPPTW
Sbjct: 61  PLVLLREAPPSLAREVEVGSFLPPSPSDPSFVLFKASPKDTPALRAGNVQPYKFILPPTW 120

Query: 121 KQLRIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPE 180
           KQ R+ANILSGNYCQPKCAEPW+EVKFEDEKQGK+QVVASPLIRLTNK  ATIE+IGSPE
Sbjct: 121 KQARVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNATIEDIGSPE 180

Query: 181 KLIASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTV 240
           K+IASLGPFVTGNTLDPDEL+ETSVEKLGDQTYYKYVLETPYALTGTHN+AKATAKG+TV
Sbjct: 181 KVIASLGPFVTGNTLDPDELLETSVEKLGDQTYYKYVLETPYALTGTHNLAKATAKGNTV 240

Query: 241 VLVVASANDKQWQTSQKTLQAIVDSFQV 263
           VL V SANDKQWQTS++TL+A++DSF+V
Sbjct: 241 VLFVVSANDKQWQTSEETLKAVLDSFEV 265

[Close]

BLAST of Spo04980.1 vs. UniProtKB/TrEMBL
Match: I1JN14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G123100 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 8.700e-101
Identity = 190/265 (71.70%), Postives = 222/265 (83.77%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS 60
           M T + T L   + SS S  SK +    ++     +    +  +RR+ L G++L+PL L 
Sbjct: 1   MTTFAFTSLLPLTVSSPSSSSKFSAFHAIRASLDSEYVASRHTLRREFLKGVALMPLPLV 60

Query: 61  V---PPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQL 120
           V   PPPS AR+V+VGSFLPPSPSDPS VLFKAT KDTPALRAGNV PY+F+LPPTWKQ 
Sbjct: 61  VMREPPPSHAREVEVGSFLPPSPSDPSFVLFKATPKDTPALRAGNVQPYKFILPPTWKQA 120

Query: 121 RIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLI 180
           R+ANILSGNYCQPKCAEPW+EVKFEDEKQGK+QVVASPLIRLTNK  A+IE+IGSPEKLI
Sbjct: 121 RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLI 180

Query: 181 ASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLV 240
           ASLGPFVTGNTLDPDEL+ETSVEK+GDQTYYKYVLETPYALTGTHN+AKATAKG+TVVL 
Sbjct: 181 ASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLF 240

Query: 241 VASANDKQWQTSQKTLQAIVDSFQV 263
           V SANDKQWQTS++TL+A+++SF+V
Sbjct: 241 VVSANDKQWQTSEETLKAVLNSFEV 265

[Close]

BLAST of Spo04980.1 vs. UniProtKB/TrEMBL
Match: A0A0B2PXA0_GLYSO (PsbP domain-containing protein 6, chloroplastic OS=Glycine soja GN=glysoja_036500 PE=4 SV=1)

HSP 1 Score: 374.8 bits (961), Expect = 8.700e-101
Identity = 190/265 (71.70%), Postives = 222/265 (83.77%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISLLPLVLS 60
           M T + T L   + SS S  SK +    ++     +    +  +RR+ L G++L+PL L 
Sbjct: 1   MTTFAFTSLLPLTVSSPSSSSKFSAFHAIRASLDSEYVASRHTLRREFLKGVALMPLPLV 60

Query: 61  V---PPPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQL 120
           V   PPPS AR+V+VGSFLPPSPSDPS VLFKAT KDTPALRAGNV PY+F+LPPTWKQ 
Sbjct: 61  VMREPPPSHAREVEVGSFLPPSPSDPSFVLFKATPKDTPALRAGNVQPYKFILPPTWKQA 120

Query: 121 RIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLI 180
           R+ANILSGNYCQPKCAEPW+EVKFEDEKQGK+QVVASPLIRLTNK  A+IE+IGSPEKLI
Sbjct: 121 RVANILSGNYCQPKCAEPWVEVKFEDEKQGKVQVVASPLIRLTNKPNASIEDIGSPEKLI 180

Query: 181 ASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLV 240
           ASLGPFVTGNTLDPDEL+ETSVEK+GDQTYYKYVLETPYALTGTHN+AKATAKG+TVVL 
Sbjct: 181 ASLGPFVTGNTLDPDELLETSVEKIGDQTYYKYVLETPYALTGTHNLAKATAKGNTVVLF 240

Query: 241 VASANDKQWQTSQKTLQAIVDSFQV 263
           V SANDKQWQTS++TL+A+++SF+V
Sbjct: 241 VVSANDKQWQTSEETLKAVLNSFEV 265

[Close]

BLAST of Spo04980.1 vs. ExPASy Swiss-Prot
Match: PPD6_ARATH (PsbP domain-containing protein 6, chloroplastic OS=Arabidopsis thaliana GN=PPD6 PE=1 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.600e-92
Identity = 179/265 (67.55%), Postives = 215/265 (81.13%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISL-LPLVL 60
           MATASL   +   S S    + +   S + + + +Q+Q  +   RR+LL   ++ +P +L
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPR---RRELLLKSAVAIPAIL 60

Query: 61  SVP--PPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQL 120
            +   P S AR+V+VGS+LP SPSDPS VLFKA   DTPALRAGNV PYQFVLPP WKQL
Sbjct: 61  QLKEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQL 120

Query: 121 RIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLI 180
           RIANILSGNYCQPKCAEPWIEVKFE+EKQGK+QVVASPLIRLTNK  ATIE++G PEK+I
Sbjct: 121 RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVI 180

Query: 181 ASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLV 240
           ASLGPFVTGN+ D DEL++TS+EK+GDQTYYKYVLETP+ALTG+HN+AKATAKGSTVVL 
Sbjct: 181 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWQTSQKTLQAIVDSFQV 263
           V SA +KQWQ+SQKTL+AI+DSFQ+
Sbjct: 241 VVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of Spo04980.1 vs. ExPASy Swiss-Prot
Match: PPD4_ARATH (PsbP domain-containing protein 4, chloroplastic OS=Arabidopsis thaliana GN=PPD4 PE=1 SV=2)

HSP 1 Score: 77.4 bits (189), Expect = 2.600e-13
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 1


		  
Query: 103 VAPYQFVLPPTWKQLRIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNK 162
           + PY F +P  W ++ ++    G           I+++F   K+G+L V+ +P++R  + 
Sbjct: 113 IIPYAFSVPQDWNEVPVSIADLGG--------TEIDLRFASPKEGRLSVIVAPVLRFADN 172

Query: 163 L--KATIEEIGSPEKLIASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTG 222
           L     IE IG P K+I + GP V G  ++  +++ ++V +   + YY++ LE P     
Sbjct: 173 LGDDVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP----- 232

Query: 223 THNIAKATAKGSTVVLVVASANDKQWQTSQKTLQAIVDSFQV 263
            H +  ATA G+ + L   + N  QW+   K L+ I  SF++
Sbjct: 233 -HVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 259

[Close]

BLAST of Spo04980.1 vs. TAIR (Arabidopsis)
Match: AT3G56650.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 339.3 bits (869), Expect = 2.000e-93
Identity = 179/265 (67.55%), Postives = 215/265 (81.13%), Query Frame = 1


		  
Query: 1   MATASLTQLALTSSSSTSIKSKLTIPSLLQLHAQKQEQHGKLVIRRDLLTGISL-LPLVL 60
           MATASL   +   S S    + +   S + + + +Q+Q  +   RR+LL   ++ +P +L
Sbjct: 1   MATASLVPTSKIFSVSPKSSASIKARSRVVVASSQQQQQPR---RRELLLKSAVAIPAIL 60

Query: 61  SVP--PPSLARDVDVGSFLPPSPSDPSMVLFKATSKDTPALRAGNVAPYQFVLPPTWKQL 120
            +   P S AR+V+VGS+LP SPSDPS VLFKA   DTPALRAGNV PYQFVLPP WKQL
Sbjct: 61  QLKEAPISAAREVEVGSYLPLSPSDPSFVLFKAKPSDTPALRAGNVQPYQFVLPPNWKQL 120

Query: 121 RIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNKLKATIEEIGSPEKLI 180
           RIANILSGNYCQPKCAEPWIEVKFE+EKQGK+QVVASPLIRLTNK  ATIE++G PEK+I
Sbjct: 121 RIANILSGNYCQPKCAEPWIEVKFENEKQGKVQVVASPLIRLTNKPNATIEDLGEPEKVI 180

Query: 181 ASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTGTHNIAKATAKGSTVVLV 240
           ASLGPFVTGN+ D DEL++TS+EK+GDQTYYKYVLETP+ALTG+HN+AKATAKGSTVVL 
Sbjct: 181 ASLGPFVTGNSYDSDELLKTSIEKIGDQTYYKYVLETPFALTGSHNLAKATAKGSTVVLF 240

Query: 241 VASANDKQWQTSQKTLQAIVDSFQV 263
           V SA +KQWQ+SQKTL+AI+DSFQ+
Sbjct: 241 VVSATEKQWQSSQKTLEAILDSFQL 262

[Close]

BLAST of Spo04980.1 vs. TAIR (Arabidopsis)
Match: AT1G77090.1 (Mog1/PsbP/DUF1795-like photosystem II reaction center PsbP family protein)

HSP 1 Score: 77.4 bits (189), Expect = 1.400e-14
Identity = 46/162 (28.40%), Postives = 83/162 (51.23%), Query Frame = 1


		  
Query: 103 VAPYQFVLPPTWKQLRIANILSGNYCQPKCAEPWIEVKFEDEKQGKLQVVASPLIRLTNK 162
           + PY F +P  W ++ ++    G           I+++F   K+G+L V+ +P++R  + 
Sbjct: 113 IIPYAFSVPQDWNEVPVSIADLGG--------TEIDLRFASPKEGRLSVIVAPVLRFADN 172

Query: 163 L--KATIEEIGSPEKLIASLGPFVTGNTLDPDELIETSVEKLGDQTYYKYVLETPYALTG 222
           L     IE IG P K+I + GP V G  ++  +++ ++V +   + YY++ LE P     
Sbjct: 173 LGDDVKIENIGQPAKVINAFGPEVIGENVE-GKVLSSNVAEHDGRLYYQFELEPP----- 232

Query: 223 THNIAKATAKGSTVVLVVASANDKQWQTSQKTLQAIVDSFQV 263
            H +  ATA G+ + L   + N  QW+   K L+ I  SF++
Sbjct: 233 -HVLITATAAGNRLYLFSVTGNGLQWKRHYKDLKRIASSFRI 259

The following BLAST results are available for this feature:

BLAST of Spo04980.1 vs. NCBI nr
BLAST of Spo04980.1 vs. UniProtKB/TrEMBL
BLAST of Spo04980.1 vs. ExPASy Swiss-Prot
BLAST of Spo04980.1 vs. TAIR (Arabidopsis)

BLAST of Spo04980.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902146869\|gb\|KNA05109.1\|	1.8e-139	100.	hypothetical protein SOVF_1934...	[more]
gi\|731324638\|ref\|XP_010673078.1\|	6.0e-111	81.5	PREDICTED: psbP domain-contain...	[more]
gi\|1012352898\|gb\|KYP64086.1\|	9.5e-101	74.2	hypothetical protein KK1_01867...	[more]
gi\|734349743\|gb\|KHN12177.1\|	1.2e-100	71.7	PsbP domain-containing protein...	[more]
gi\|720097161\|ref\|XP_010247230.1\|	6.2e-100	70.9	PREDICTED: psbP domain-contain...	[more]

BLAST of Spo04980.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QCX3_SPIOL	1.2e-139	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CNY4_BETVU	4.1e-111	81.5	Uncharacterized protein OS=Bet...	[more]
A0A151TAN4_CAJCA	6.6e-101	74.2	Uncharacterized protein OS=Caj...	[more]
I1JN14_SOYBN	8.7e-101	71.7	Uncharacterized protein OS=Gly...	[more]
A0A0B2PXA0_GLYSO	8.7e-101	71.7	PsbP domain-containing protein...	[more]

BLAST of Spo04980.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
PPD6_ARATH	3.6e-92	67.5	PsbP domain-containing protein...	[more]
PPD4_ARATH	2.6e-13	28.4	PsbP domain-containing protein...	[more]

BLAST of Spo04980.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2


Match Name	E-value	Identity	Description
AT3G56650.1	2.0e-93	67.5	Mog1/PsbP/DUF1795-like photosy...	[more]
AT1G77090.1	1.4e-14	28.4	Mog1/PsbP/DUF1795-like photosy...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002683	PsbP family	PFAM	PF01789	PsbP	coord: 106..262 score: 8.0
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	GENE3D	3.40.1000.10		coord: 93..262 score: 4.7
IPR016123	Mog1/PsbP, alpha/beta/alpha sandwich	unknown	SSF55724	Mog1p/PsbP-like	coord: 101..262 score: 5.18
None	No IPR available	PANTHER	PTHR31407	FAMILY NOT NAMED	coord: 12..56 score: 6.2E-118coord: 72..262 score: 6.2E
None	No IPR available	PANTHER	PTHR31407:SF14	PSBP DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC	coord: 12..56 score: 6.2E-118coord: 72..262 score: 6.2E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0015979	photosynthesis
biological_process	GO:0010027	thylakoid membrane organization
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0009523	photosystem II
molecular_function	GO:0005509	calcium ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03139	0.69	Barchart \| Table
Spo14405	0.66	Barchart \| Table
Spo22759	0.66	Barchart \| Table