Spo05009 (gene) | SpinachBase

Overview


Name	Spo05009
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chlorophyll a-b binding protein 8, chloroplastic (LHCII type I CAB-8) (Precursor)
Location	chr2 : 40662066 .. 40662938 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACCTCAACCATCCAACAATCTGCATTTGCTGGTCAGACCATCTTGAAGCAACAAAATGACTTGGTTCGCAAGGTCGGTGGCAACGGAGGCCGTTTTTCTATGCGTCGTACAGTAAAGAGCGCTCCACAAAGCTTATGGTATGTAACTCTTTCTCTGTTGTCGTCTCATAGAATTTGCAACAACTCCAAGTAATAATATATAACTAAAAATTGCAGGTACGGTCCTGACCGTCCCAAGTATTTGGGCCCCTTCTCAGAGCAGACCCCATCATACCTTACTGGTGAATTCCCCGGTGACTACGGGTGGGACACTGCTGGACTCTCAGCAGACCCTGAAACCTTCGCCAGGAACCGTGAACTTGAGGTGATCCACTCTAGGTGGGCTATGCTTGGTGCCCTTGGTTGTGTATTCCCCGAACTCCTTTCCAAGAATGGTGTCAAATTTGGTGAAGCCGTTTGGTTTAAGGCTGGATCCCAAATCTTCCAGGAAGGTGGCCTTGACTACCTAGGAAACCCAAACCTGGTCCATGCCCAAAGTATCCTAGCTATCTGGGCTAGCCAAGTCGTTCTCATGGGTTTGATTGAGGGCTACCGTGTTGGTGGTGGGCCATTGGGTGAAGGGCTCGACAAGGTTTACCCAGGTGGATCTTTTGACCCACTTGGCCTTGCAGATGACCCTGAGGCCTTTGCTGAACTCAAGGTAAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCCATGTTCGGCTTCTTCATTCAGGCTATTGTTACTGGAAAGGGTCCCATTGAGAACCTCTCCGACCACCTTGCTGACCCAGTCGCTAACAATGCCTGGGCTTTTGCCACCAACTTCGTTCCTGGAAATTAA

mRNA sequence

ATGGCTACCTCAACCATCCAACAATCTGCATTTGCTGGTCAGACCATCTTGAAGCAACAAAATGACTTGGTTCGCAAGGTCGGTGGCAACGGAGGCCGTTTTTCTATGCGTCGTACAGTAAAGAGCGCTCCACAAAGCTTATGGTACGGTCCTGACCGTCCCAAGTATTTGGGCCCCTTCTCAGAGCAGACCCCATCATACCTTACTGGTGAATTCCCCGGTGACTACGGGTGGGACACTGCTGGACTCTCAGCAGACCCTGAAACCTTCGCCAGGAACCGTGAACTTGAGGTGATCCACTCTAGGTGGGCTATGCTTGGTGCCCTTGGTTGTGTATTCCCCGAACTCCTTTCCAAGAATGGTGTCAAATTTGGTGAAGCCGTTTGGTTTAAGGCTGGATCCCAAATCTTCCAGGAAGGTGGCCTTGACTACCTAGGAAACCCAAACCTGGTCCATGCCCAAAGTATCCTAGCTATCTGGGCTAGCCAAGTCGTTCTCATGGGTTTGATTGAGGGCTACCGTGTTGGTGGTGGGCCATTGGGTGAAGGGCTCGACAAGGTTTACCCAGGTGGATCTTTTGACCCACTTGGCCTTGCAGATGACCCTGAGGCCTTTGCTGAACTCAAGGTAAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCCATGTTCGGCTTCTTCATTCAGGCTATTGTTACTGGAAAGGGTCCCATTGAGAACCTCTCCGACCACCTTGCTGACCCAGTCGCTAACAATGCCTGGGCTTTTGCCACCAACTTCGTTCCTGGAAATTAA

Coding sequence (CDS)

ATGGCTACCTCAACCATCCAACAATCTGCATTTGCTGGTCAGACCATCTTGAAGCAACAAAATGACTTGGTTCGCAAGGTCGGTGGCAACGGAGGCCGTTTTTCTATGCGTCGTACAGTAAAGAGCGCTCCACAAAGCTTATGGTACGGTCCTGACCGTCCCAAGTATTTGGGCCCCTTCTCAGAGCAGACCCCATCATACCTTACTGGTGAATTCCCCGGTGACTACGGGTGGGACACTGCTGGACTCTCAGCAGACCCTGAAACCTTCGCCAGGAACCGTGAACTTGAGGTGATCCACTCTAGGTGGGCTATGCTTGGTGCCCTTGGTTGTGTATTCCCCGAACTCCTTTCCAAGAATGGTGTCAAATTTGGTGAAGCCGTTTGGTTTAAGGCTGGATCCCAAATCTTCCAGGAAGGTGGCCTTGACTACCTAGGAAACCCAAACCTGGTCCATGCCCAAAGTATCCTAGCTATCTGGGCTAGCCAAGTCGTTCTCATGGGTTTGATTGAGGGCTACCGTGTTGGTGGTGGGCCATTGGGTGAAGGGCTCGACAAGGTTTACCCAGGTGGATCTTTTGACCCACTTGGCCTTGCAGATGACCCTGAGGCCTTTGCTGAACTCAAGGTAAAGGAGCTCAAGAACGGAAGATTGGCTATGTTCTCCATGTTCGGCTTCTTCATTCAGGCTATTGTTACTGGAAAGGGTCCCATTGAGAACCTCTCCGACCACCTTGCTGACCCAGTCGCTAACAATGCCTGGGCTTTTGCCACCAACTTCGTTCCTGGAAATTAA

Protein sequence

MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPLGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIENLSDHLADPVANNAWAFATNFVPGN

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05009.1	Spo05009.1	mRNA

Homology

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BLAST of Spo05009.1 vs. NCBI nr
Match: gi|902172715|gb|KNA08160.1| (hypothetical protein SOVF_165140 [Spinacia oleracea])

HSP 1 Score: 547.4 bits (1409), Expect = 1.400e-152
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF
Sbjct: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN
Sbjct: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPGN 265
           LSDHLADPVANNAWAFATNFVPGN
Sbjct: 241 LSDHLADPVANNAWAFATNFVPGN 264

[Close]

BLAST of Spo05009.1 vs. NCBI nr
Match: gi|398599|emb|CAA52750.1| (chlorophyll a/b binding protein [Amaranthus hypochondriacus])

HSP 1 Score: 533.1 bits (1372), Expect = 2.800e-148
Identity = 251/263 (95.44%), Postives = 261/263 (99.24%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATSTIQQSAF GQT+LKQQN+LVRKVGGNGGRFSMRRTVKSAPQS+WYGPDRPKYLGPF
Sbjct: 1   MATSTIQQSAFVGQTLLKQQNELVRKVGGNGGRFSMRRTVKSAPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE+LSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIFQEGGLDYLGNPNL+HAQSILAIWA QVVLMGLIEGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDK+YPGG+FDPLGLADDP+AFAELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           LSDHLADPVANNAWA+ATNFVPG
Sbjct: 241 LSDHLADPVANNAWAYATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. NCBI nr
Match: gi|731371111|ref|XP_010665939.1| (PREDICTED: chlorophyll a-b binding protein 5, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 530.4 bits (1365), Expect = 1.800e-147
Identity = 252/263 (95.82%), Postives = 260/263 (98.86%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATSTIQQSAFAGQTILK QN+LVRK GGNGGR SMRRTVKSAPQS+WYGPDRPKYLGPF
Sbjct: 1   MATSTIQQSAFAGQTILKPQNELVRKFGGNGGRASMRRTVKSAPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+LSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIFQEGGLDYLGNPNL+HAQSILAIWASQVVLMGLIEGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDK+YPGG+FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           LSDHLADPVANNAWAFATNFVPG
Sbjct: 241 LSDHLADPVANNAWAFATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. NCBI nr
Match: gi|719989630|ref|XP_010252708.1| (PREDICTED: chlorophyll a-b binding protein 151, chloroplastic-like [Nelumbo nucifera])

HSP 1 Score: 512.3 bits (1318), Expect = 5.000e-142
Identity = 240/264 (90.91%), Postives = 254/264 (96.21%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATS IQQSAFAGQT LKQQN+LVRKVG +GGR SMRRTVKSAPQS+WYGPDRPKYLGPF
Sbjct: 1   MATSAIQQSAFAGQTALKQQNELVRKVGVSGGRVSMRRTVKSAPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIH+RWAMLGALGCVFPE+L KN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHARWAMLGALGCVFPEILEKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAG+QIF EGGLDYLGNPNLVHAQSILAIWA QVVLMG +EGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWAFQVVLMGFVEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDK+YPGG+FDPLGLADDP+AFAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDKIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPGN 265
           L DHLADP +NNAWA+ATNFVPGN
Sbjct: 241 LFDHLADPASNNAWAYATNFVPGN 264

[Close]

BLAST of Spo05009.1 vs. NCBI nr
Match: gi|720045359|ref|XP_010270182.1| (PREDICTED: chlorophyll a-b binding protein 151, chloroplastic [Nelumbo nucifera])

HSP 1 Score: 511.5 bits (1316), Expect = 8.600e-142
Identity = 239/263 (90.87%), Postives = 254/263 (96.58%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATS IQQSAFAGQT LKQQN+LVRKVG +GGR SMRRTVKSAPQS+WYGPDRPKYLGPF
Sbjct: 1   MATSAIQQSAFAGQTALKQQNELVRKVGVSGGRISMRRTVKSAPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH+RWAMLGALGCVFPE+L+KN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHARWAMLGALGCVFPEILAKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFVEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDK+YPGG+FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           L DHLADP ANNAWA+ATNFVPG
Sbjct: 241 LFDHLADPAANNAWAYATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLM7_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea GN=SOVF_165140 PE=3 SV=1)

HSP 1 Score: 547.4 bits (1409), Expect = 9.800e-153
Identity = 264/264 (100.00%), Postives = 264/264 (100.00%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF
Sbjct: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN
Sbjct: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPGN 265
           LSDHLADPVANNAWAFATNFVPGN
Sbjct: 241 LSDHLADPVANNAWAFATNFVPGN 264

[Close]

BLAST of Spo05009.1 vs. UniProtKB/TrEMBL
Match: Q38713_AMAHP (Chlorophyll a-b binding protein, chloroplastic OS=Amaranthus hypochondriacus GN=Lhcb2*Ah1 PE=3 SV=1)

HSP 1 Score: 533.1 bits (1372), Expect = 1.900e-148
Identity = 251/263 (95.44%), Postives = 261/263 (99.24%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATSTIQQSAF GQT+LKQQN+LVRKVGGNGGRFSMRRTVKSAPQS+WYGPDRPKYLGPF
Sbjct: 1   MATSTIQQSAFVGQTLLKQQNELVRKVGGNGGRFSMRRTVKSAPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE+LSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPEILSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIFQEGGLDYLGNPNL+HAQSILAIWA QVVLMGLIEGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDK+YPGG+FDPLGLADDP+AFAELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDKIYPGGAFDPLGLADDPDAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           LSDHLADPVANNAWA+ATNFVPG
Sbjct: 241 LSDHLADPVANNAWAYATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. UniProtKB/TrEMBL
Match: O49812_BETVU (Chlorophyll a-b binding protein, chloroplastic OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g225010 PE=2 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 1.200e-147
Identity = 252/263 (95.82%), Postives = 260/263 (98.86%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATSTIQQSAFAGQTILK QN+LVRK GGNGGR SMRRTVKSAPQS+WYGPDRPKYLGPF
Sbjct: 1   MATSTIQQSAFAGQTILKPQNELVRKFGGNGGRASMRRTVKSAPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+LSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIFQEGGLDYLGNPNL+HAQSILAIWASQVVLMGLIEGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDK+YPGG+FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           LSDHLADPVANNAWAFATNFVPG
Sbjct: 241 LSDHLADPVANNAWAFATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. UniProtKB/TrEMBL
Match: W5FNT8_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 530.4 bits (1365), Expect = 1.200e-147
Identity = 252/263 (95.82%), Postives = 260/263 (98.86%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATSTIQQSAFAGQTILK QN+LVRK GGNGGR SMRRTVKSAPQS+WYGPDRPKYLGPF
Sbjct: 1   MATSTIQQSAFAGQTILKPQNELVRKFGGNGGRASMRRTVKSAPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+LSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIFQEGGLDYLGNPNL+HAQSILAIWASQVVLMGLIEGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLIHAQSILAIWASQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLDK+YPGG+FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDKLYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           LSDHLADPVANNAWAFATNFVPG
Sbjct: 241 LSDHLADPVANNAWAFATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. UniProtKB/TrEMBL
Match: V9VHL7_ZIZJJ (Chlorophyll a-b binding protein, chloroplastic OS=Ziziphus jujuba PE=2 SV=1)

HSP 1 Score: 510.4 bits (1313), Expect = 1.300e-141
Identity = 239/263 (90.87%), Postives = 251/263 (95.44%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MATS IQQSAFAGQT LKQ N+LVRKVG  GGR +MRRTVKS PQS+WYGPDRPKYLGPF
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVRKVGSGGGRITMRRTVKSVPQSIWYGPDRPKYLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGCVFPE+LSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GVKFGEAVWFKAGSQIF EGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYRVGGGPL
Sbjct: 121 GVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLD +YPGG+FDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDPIYPGGAFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           L DH+ADPVANNAWA+ATNFVPG
Sbjct: 241 LYDHVADPVANNAWAYATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 508.4 bits (1308), Expect = 4.500e-143
Identity = 240/264 (90.91%), Postives = 254/264 (96.21%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGG-NGGRFSMRRTVKSAPQSLWYGPDRPKYLGP 60
           MATS I+QSAFAGQT LK QN+LVRK+G  NGGR +MRRTVKSAPQS+WYG DRPKYLGP
Sbjct: 1   MATSAIEQSAFAGQTALKSQNELVRKIGSFNGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIH RWAMLGALGCVFPE+LSK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
           NGVKFGEAVWFKAGSQIF EGGLDYLGNPNL+HAQSILA+WASQVVLMGLIEGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAVWASQVVLMGLIEGYRVGGGP 180

Query: 181 LGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIE 240
           LGEGLDK+YPGG+FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLSDHLADPVANNAWAFATNFVPG 264
           NL DH+ADPVANNAWA+ATNFVPG
Sbjct: 241 NLFDHVADPVANNAWAYATNFVPG 264

[Close]

BLAST of Spo05009.1 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 503.4 bits (1295), Expect = 1.500e-141
Identity = 238/264 (90.15%), Postives = 251/264 (95.08%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGG-NGGRFSMRRTVKSAPQSLWYGPDRPKYLGP 60
           MATS IQQSAFAGQT LK QN+LVRK+G   GGR +MRRTVKSAPQS+WYG DRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKSQNELVRKIGSFGGGRATMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIH RWAMLGALGCVFPE+LSK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
           NGV FGEAVWFKAGSQIF EGGLDYLGNPNL+HAQSILAIWA+QVVLMG +EGYRVGGGP
Sbjct: 121 NGVTFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAAQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIE 240
           LGEGLDK+YPGG+FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLSDHLADPVANNAWAFATNFVPG 264
           NL DH+ADPVANNAWAFATNFVPG
Sbjct: 241 NLYDHVADPVANNAWAFATNFVPG 264

[Close]

BLAST of Spo05009.1 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 501.1 bits (1289), Expect = 7.300e-141
Identity = 235/263 (89.35%), Postives = 253/263 (96.20%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNGGRFSMRRTVKSAPQSLWYGPDRPKYLGPF 60
           MA S IQ SAFAGQT LKQ+++LVRKVG + GRFSMRRTVK+ PQS+WYG DRPK+LGPF
Sbjct: 1   MAASAIQSSAFAGQTALKQRDELVRKVGVSDGRFSMRRTVKAVPQSIWYGADRPKFLGPF 60

Query: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSKN 120
           SEQTPSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC+FPELLSKN
Sbjct: 61  SEQTPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCIFPELLSKN 120

Query: 121 GVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGPL 180
           GV+FGEAVWFKAG+QIF EGGLDYLGNPNLVHAQSILAIWA+QVVLMGLIEGYRVGGGPL
Sbjct: 121 GVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPL 180

Query: 181 GEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIEN 240
           GEGLD +YPGG+FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGPIEN
Sbjct: 181 GEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIEN 240

Query: 241 LSDHLADPVANNAWAFATNFVPG 264
           L+DH+ADPVANNAWAFATNFVPG
Sbjct: 241 LADHIADPVANNAWAFATNFVPG 263

[Close]

BLAST of Spo05009.1 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 496.1 bits (1276), Expect = 2.300e-139
Identity = 234/264 (88.64%), Postives = 248/264 (93.94%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGG-NGGRFSMRRTVKSAPQSLWYGPDRPKYLGP 60
           MATS IQQSAFAGQT LKQ N+LV K+G   GGR SMRRTVKSAP S+WYGPDRPKYLGP
Sbjct: 1   MATSAIQQSAFAGQTALKQSNELVCKIGAVGGGRVSMRRTVKSAPTSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSK 120
           FS+Q PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPE+LSK
Sbjct: 61  FSDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
           NGVKFGEAVWFKAGSQIF EGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIE 240
           LGEGLD +YPGG+FDPLGLADDP+AFAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGPIE
Sbjct: 181 LGEGLDPIYPGGAFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLSDHLADPVANNAWAFATNFVPG 264
           NL DHLADPVANNAWA+ATNFVPG
Sbjct: 241 NLFDHLADPVANNAWAYATNFVPG 264

[Close]

BLAST of Spo05009.1 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 495.7 bits (1275), Expect = 3.100e-139
Identity = 234/264 (88.64%), Postives = 247/264 (93.56%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGNG-GRFSMRRTVKSAPQSLWYGPDRPKYLGP 60
           MAT  IQQSAF GQ + K QN+ +RKVG  G GR +MRRTVKSAPQS+WYG DRPKYLGP
Sbjct: 1   MATCAIQQSAFVGQAVGKSQNEFIRKVGNFGEGRITMRRTVKSAPQSIWYGEDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSK 120
           FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIH RWAMLGALGCVFPE+LSK
Sbjct: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHCRWAMLGALGCVFPEILSK 120

Query: 121 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
           NGVKFGEAVWFKAGSQIF EGGLDYLGNPNLVHAQSILAIWA QVVLMG +EGYRVGGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAIWACQVVLMGFVEGYRVGGGP 180

Query: 181 LGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIE 240
           LGEGLDK+YPGG+FDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFF+QAIVTGKGPIE
Sbjct: 181 LGEGLDKIYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLSDHLADPVANNAWAFATNFVPG 264
           NLSDH+ DPVANNAWA+ATNFVPG
Sbjct: 241 NLSDHINDPVANNAWAYATNFVPG 264

[Close]

BLAST of Spo05009.1 vs. TAIR (Arabidopsis)
Match: AT2G05100.1 (photosystem II light harvesting complex gene 2.1)

HSP 1 Score: 492.3 bits (1266), Expect = 1.900e-139
Identity = 231/265 (87.17%), Postives = 248/265 (93.58%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVG-GNGGRFSMRRTVKSAPQSLWYGPDRPKYLGP 60
           MATS IQQS+FAGQT LK  N+L+RKVG   GGR +MRRTVKS PQS+WYGPDRPKYLGP
Sbjct: 1   MATSAIQQSSFAGQTALKPSNELLRKVGVSGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSK 120
           FSE TPSYLTGE+PGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+LSK
Sbjct: 61  FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120

Query: 121 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
           NGVKFGEAVWFKAGSQIF EGGLDYLGNPNL+HAQSILAIWA QVVLMG IEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180

Query: 181 LGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIE 240
           LGEGLD +YPGG+FDPL LA+DPEAF+ELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLSDHLADPVANNAWAFATNFVPGN 265
           NL DHLADPVANNAW++ATNFVPGN
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPGN 265

[Close]

BLAST of Spo05009.1 vs. TAIR (Arabidopsis)
Match: AT3G27690.1 (photosystem II light harvesting complex gene 2.3)

HSP 1 Score: 489.2 bits (1258), Expect = 1.600e-138
Identity = 229/265 (86.42%), Postives = 246/265 (92.83%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGGN--GGRFSMRRTVKSAPQSLWYGPDRPKYLG 60
           MATS IQ S+FAGQT LK  NDL+RK+G +  GGR  MRRTVKS PQS+WYGPDRPKYLG
Sbjct: 1   MATSAIQHSSFAGQTTLKPSNDLLRKIGASNGGGRIIMRRTVKSTPQSIWYGPDRPKYLG 60

Query: 61  PFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLS 120
           PFSE TPSYLTGE+PGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+LS
Sbjct: 61  PFSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILS 120

Query: 121 KNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGG 180
           KNGVKFGEAVWFKAGSQIF EGGLDYLGNPNL+HAQSILAIWA QVVLMG IEGYR+GGG
Sbjct: 121 KNGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFIEGYRIGGG 180

Query: 181 PLGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPI 240
           PLGEGLD +YPGG+FDPL LA+DPEAF+ELKVKELKNGRLAMFSMFGFF+QAIVTGKGPI
Sbjct: 181 PLGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPI 240

Query: 241 ENLSDHLADPVANNAWAFATNFVPG 264
           ENL DH+ADPVANNAWA+ATNFVPG
Sbjct: 241 ENLFDHIADPVANNAWAYATNFVPG 265

[Close]

BLAST of Spo05009.1 vs. TAIR (Arabidopsis)
Match: AT2G05070.1 (photosystem II light harvesting complex gene 2.2)

HSP 1 Score: 487.6 bits (1254), Expect = 4.700e-138
Identity = 229/264 (86.74%), Postives = 247/264 (93.56%), Query Frame = 1


		  
Query: 1   MATSTIQQSAFAGQTILKQQNDLVRKVGG-NGGRFSMRRTVKSAPQSLWYGPDRPKYLGP 60
           MATS IQQS+FAGQT LK  +DL++KVG   GGR +MRRTVKS PQS+WYGPDRPKYLGP
Sbjct: 1   MATSAIQQSSFAGQTALKPSSDLIQKVGVLGGGRVTMRRTVKSTPQSIWYGPDRPKYLGP 60

Query: 61  FSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLSK 120
           FSE TPSYLTGE+PGDYGWDTAGLSADPETFA+NRELEVIHSRWAMLGALGC FPE+LSK
Sbjct: 61  FSENTPSYLTGEYPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCTFPEILSK 120

Query: 121 NGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRVGGGP 180
           NGVKFGEAVWFKAGSQIF EGGLDYLGNPNL+HAQSILAIWA QVVLMG IEGYR+GGGP
Sbjct: 121 NGVKFGEAVWFKAGSQIFSEGGLDYLGNPNLIHAQSILAIWAVQVVLMGFIEGYRIGGGP 180

Query: 181 LGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTGKGPIE 240
           LGEGLD +YPGG+FDPL LA+DPEAF+ELKVKELKNGRLAMFSMFGFF+QAIVTGKGPIE
Sbjct: 181 LGEGLDPLYPGGAFDPLNLAEDPEAFSELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIE 240

Query: 241 NLSDHLADPVANNAWAFATNFVPG 264
           NL DHLADPVANNAW++ATNFVPG
Sbjct: 241 NLFDHLADPVANNAWSYATNFVPG 264

[Close]

BLAST of Spo05009.1 vs. TAIR (Arabidopsis)
Match: AT2G34420.1 (photosystem II light harvesting complex gene B1B2)

HSP 1 Score: 425.2 bits (1092), Expect = 2.900e-119
Identity = 210/269 (78.07%), Postives = 231/269 (85.87%), Query Frame = 1


		  
Query: 1   MATSTIQQS--AFAGQTILKQQNDLVRKVGGNGGRFSMRRTV---KSAPQSLWYGPDRPK 60
           MA+ST+  S  AFAG+ +    +D++       GR +MR+TV   K    S WYG DR K
Sbjct: 1   MASSTMALSSPAFAGKAVKPAASDVL-----GSGRVTMRKTVAKPKGPSGSPWYGSDRVK 60

Query: 61  YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120
           YLGPFS + PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE
Sbjct: 61  YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120

Query: 121 LLSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRV 180
           LL++NGVKFGEAVWFKAGSQIF +GGLDYLGNP+LVHAQSILAIWA+QV+LMG +EGYRV
Sbjct: 121 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 180

Query: 181 GG-GPLGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTG 240
            G GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFF+QAIVTG
Sbjct: 181 AGDGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 240

Query: 241 KGPIENLSDHLADPVANNAWAFATNFVPG 264
           KGP+ENL+DHLADPV NNAWAFATNFVPG
Sbjct: 241 KGPLENLADHLADPVNNNAWAFATNFVPG 264

[Close]

BLAST of Spo05009.1 vs. TAIR (Arabidopsis)
Match: AT1G29930.1 (chlorophyll A/B binding protein 1)

HSP 1 Score: 423.3 bits (1087), Expect = 1.100e-118
Identity = 212/269 (78.81%), Postives = 233/269 (86.62%), Query Frame = 1


		  
Query: 1   MATSTIQQS--AFAGQTILKQQNDLVRKVGGNGGRFSMRRTV---KSAPQSLWYGPDRPK 60
           MA ST+  S  AFAG+ +  + +    +V G+G R +MR+TV   K    S WYG DR K
Sbjct: 1   MAASTMALSSPAFAGKAV--KLSPAASEVLGSG-RVTMRKTVAKPKGPSGSPWYGSDRVK 60

Query: 61  YLGPFSEQTPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120
           YLGPFS ++PSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE
Sbjct: 61  YLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPE 120

Query: 121 LLSKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWASQVVLMGLIEGYRV 180
           LL++NGVKFGEAVWFKAGSQIF +GGLDYLGNP+LVHAQSILAIWA+QV+LMG +EGYRV
Sbjct: 121 LLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 180

Query: 181 -GGGPLGEGLDKVYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFIQAIVTG 240
            G GPLGE  D +YPGGSFDPLGLA DPEAFAELKVKELKNGRLAMFSMFGFF+QAIVTG
Sbjct: 181 AGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTG 240

Query: 241 KGPIENLSDHLADPVANNAWAFATNFVPG 264
           KGPIENL+DHLADPV NNAWAFATNFVPG
Sbjct: 241 KGPIENLADHLADPVNNNAWAFATNFVPG 266

The following BLAST results are available for this feature:

BLAST of Spo05009.1 vs. NCBI nr
BLAST of Spo05009.1 vs. UniProtKB/TrEMBL
BLAST of Spo05009.1 vs. ExPASy Swiss-Prot
BLAST of Spo05009.1 vs. TAIR (Arabidopsis)

BLAST of Spo05009.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902172715\|gb\|KNA08160.1\|	1.4e-152	100.	hypothetical protein SOVF_1651...	[more]
gi\|398599\|emb\|CAA52750.1\|	2.8e-148	95.4	chlorophyll a/b binding protei...	[more]
gi\|731371111\|ref\|XP_010665939.1\|	1.8e-147	95.8	PREDICTED: chlorophyll a-b bin...	[more]
gi\|719989630\|ref\|XP_010252708.1\|	5.0e-142	90.9	PREDICTED: chlorophyll a-b bin...	[more]
gi\|720045359\|ref\|XP_010270182.1\|	8.6e-142	90.8	PREDICTED: chlorophyll a-b bin...	[more]

BLAST of Spo05009.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QLM7_SPIOL	9.8e-153	100.	Chlorophyll a-b binding protei...	[more]
Q38713_AMAHP	1.9e-148	95.4	Chlorophyll a-b binding protei...	[more]
O49812_BETVU	1.2e-147	95.8	Chlorophyll a-b binding protei...	[more]
W5FNT8_WHEAT	1.2e-147	95.8	Chlorophyll a-b binding protei...	[more]
V9VHL7_ZIZJJ	1.3e-141	90.8	Chlorophyll a-b binding protei...	[more]

BLAST of Spo05009.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
CB23_TOBAC	4.5e-143	90.9	Chlorophyll a-b binding protei...	[more]
CB26_PETSP	1.5e-141	90.1	Chlorophyll a-b binding protei...	[more]
CB21_LEMGI	7.3e-141	89.3	Chlorophyll a-b binding protei...	[more]
CB21_GOSHI	2.3e-139	88.6	Chlorophyll a-b binding protei...	[more]
CB24_SOLLC	3.1e-139	88.6	Chlorophyll a-b binding protei...	[more]

BLAST of Spo05009.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G05100.1	1.9e-139	87.1	photosystem II light harvestin...	[more]
AT3G27690.1	1.6e-138	86.4	photosystem II light harvestin...	[more]
AT2G05070.1	4.7e-138	86.7	photosystem II light harvestin...	[more]
AT2G34420.1	2.9e-119	78.0	photosystem II light harvestin...	[more]
AT1G29930.1	1.1e-118	78.8	chlorophyll A/B binding protei...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 1..264 score: 9.6E
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 65..230 score: 1.5
IPR023329	Chlorophyll a/b binding protein domain	GENE3D	1.10.3460.10		coord: 57..255 score: 2.5
IPR023329	Chlorophyll a/b binding protein domain	unknown	SSF103511	Chlorophyll a-b binding protein	coord: 47..261 score: 7.06
None	No IPR available	PANTHER	PTHR21649:SF8	SUBFAMILY NOT NAMED	coord: 1..264 score: 9.6E

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
biological_process	GO:0018298	protein-chromophore linkage
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0046872	metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08176	0.71	Barchart \| Table
Spo12296	0.66	Barchart \| Table