Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAACACCCTATGATTGAGAATTTCCCAAAATAAAAGAAGCTTGACATTTTCAGATTCTTGACTCGTACCTGGAGACTCGTGAGTCGTGATCCTCCTTTTAACACCCACAACCCAAAACCTCTTCAGTCTTCACCATTCCCCCTCTCTCTCATACACTTTGCGTCAATCTTCAGTTCCCCCTTCCTTTCGATTTTATTCTCCAAATATGACGATTGGTTCTGGAGGATCTAGCGTCGTCGGTAGATTCTATTTCCCTTCTTTTTATTTCTCGATTTATGTTGAAAATTTACAAATTGTCATGGGTTTTTTCTCATTTAATTTAGGGTTAATATTTTATTTTGTTGATTGTGTGATTTTGTGTCTATGAATGTCATTTTTATGCTTGATCGAATGATGTGTCATGTCGATTTTTTTGTTATTTTGATTGATTCAACTGAAACAGGATCTAATCTTAGGATTGATTTTGATGTGTTGAAATTCAATTTTGGGTTTATTTGTTTGTTAGTGGTTCATTTTATTTTGTGTGGATAATCTTTGACATTTTTTCATATTTGGATATATAAGATTTTAAAGGGTTGCTTTACTTTGGATAAGAGATGAATTTATGGAGTTGGGGATTGGTTTTAGAATTATGGAGTTTTATTGACTTCACTATAGAAGATTGTTACTTTGATAAGAGAATAGGTTGAGAATTTAGGTCATTTTATGCTAGTTTTCTGTCTCATAATACAGAAGCCTAATTAGTAACACGACGTTTGAACTTTGACAGTCTCTTTGAAATGCTAGTGTTTAGGGGAGTTCATTAGGGGTTTTATAGATGGTGAATCTAATTGTTATCTAGACGAGGCTACATGGTGGCGAGGAGCAATGGGCACTCTGTGTATTTATGAGACAACATAAATTGGCATTGATGCATTTTATCGACAACTCTGGTAATAGTGAAACCTAGGCTCCCTTTGGTTTGATAGAAAACCTTTTCAGTGAAAATTGATTTTCCGAGGAAAAACAAAATTCCAAATAGTTTTCTTTTGTTTGGTTCCTTAGAAAAGGTCATAAAAAATAGAAAATAGGAGTAGATTAGGTGAAACGGATGGGAAGGGATAAGAGAAAAGAGGGAGGTAAGGAGGGTTTTCCCTTACTTTGAAATGTAAAATATTGCCCCCTTGAGAGATTTATTGAAAAGTTATTTTACACCACTTGTCATAATAGACAACACATGATCAGAAGTGGGAAAATCATTTTATATGAAAACGTCACACCAAACCAAACACTCTCCTAATGAGGATTTGTGGTCATTTTGACTGGAGTATATTCATCTTTTGTTTGTCAGCAATTGGATGAAAATGTTTCACACCAACCCAAACACTCTCCTAACGTTTCACTTGTCAATTCACCTTTTTCTTGTAGAAGAGTACGATGGAGAAAAACTCTACGTAGAAAAAAGATATGGTTGTAGATGCTCCATAATCGGAGGTATCTCAACATTTTCCAGTTTTGGACCTTTTCTTTTATGAGTGCGTTGTTCATAGTTCTAAAGAGTCCTCAATTTAATAGAAGTACATTCTACATATAGACCTTTATGAAAAGACATCTTGTGAGTGCAGGCTAGAGATGGGAATTAATAGTGTCTGTTGTCCTTCACACACTATACAGGAAATCCATTTTCAGACCTTAAATTTAGAGATGAATCAAGATATCTTTTTGGTATAGATTCAGCAGTTGTGATGAGAAGGGAGCGAAAGAAAGCAAATAGCATGTGTACTTGCATCTGTTTTGTTGTTGTGTTGAACACCAAGATGATTGATTGATGGTTGTAGACTGTAGTATTGACTTATAACTATCAATTTACTTATAACTGATGGTTGTAGACTGTAGTATTGATGGTTGTAGACTGTAGTATTGATTGATGGTTGTAGACTGTAGTATTGACTTATAACTATCACTATCCTTAGTGTTTGGGTCTTTTCTCACAAAGATGACTTAGGATATCGTTTTGGTATAGATTCGACAATTGTGATGAGAAGAGATGAAAGAAAGCAAATAGCACGACTACTTGCATCTATTTTGTTGTTGTATTGAATACCAAGATTCTCGTCAGGTTGATGGTTGTTGACTGTAGTATCACTTGTAATTATCAATTTACTGGTTCATGCATCACAACACCGAGTATTTGTGGACTTTTTTCATGGAGGCAAATGTTCCTCTAGTCATGTGTATTGAAAGGGCGTCGCATGGAAGGACTATTTTGAGAGGCAACTCCTATTTTAATATATGTACAATGATATTTTTCTTTGGACATTTAATTATTTTTTTTTAAGACAGGGGAGTTCCCTATCACGATTTGAGTACATCAAGGTTCCACACTGGGCCCTTTTCCCTTTGACATCGTAATGGACGAATTGAGCTCAATTCAAGACGGTGTACCATGGTGCGTGTGGTTTGCAGATGATATTGTGTTGGTCAACAAAAGTAAAGTAAGCGTGGAAAGTAAGTTGGAATTATGTAGACATACTTTGGAATCTCGTAGCTCCAAGTTGAGCAGAAGTAATACAAAATATTTGGAGTATAAGTTTAGTGGTGATAGAAGCCGAGAGGCAAGGACAATCACCTTGGATGGGAGGACTGTATAAAGTTCAAATTTCTTTCGCTACCTAGGATCTATAATCTAAAAAGATGGGGTGTTGGATGGAGATGTCGCCCATAAGATTAAATCAGGTTGGTTGAAGTGGAAGAGTGCCCTATAGATTGAAGGGGAAATTCTACCGTACGACAATTAGACGCGCACTATTATATTGCACAAAATGGTGGGTTGTGAAACTATGCAAAAGATTAATGTGGTGGAGATGTGTATGTTGCATTAGATGTATGTCCATACAAGAATCGATCGGTTGAGGAATGAGGTGATTAGGAAGAAAGTGGGGGTTAACCGATTGAGAAAAAGATGAGGGAGAATCGACTAAGGTGTTTGGCATGTAAGATGGAAGGTAAATGATGCGTCGGTTAGAAGTATTGAAGAGTGGCAAACAAATGGAATCGTAAGTAGTAGGGGAAGACCAAAATAAACATGGAAGGAGGTGATTGAGATTGATATGAGTTTATCGGGGATTGAGGAAAAATATGACATTAGATAGGGTGGAGTGGATAATACATGCCCACGACCCAACATGACTTCTTTTCCATCTCTTTCTCTTTTTTCTATTTTCTTTGCATACTTCGCTCGTGTCCCTATTTTTATTCTATTATTATTTTCAGAACATATTTTGCCTTTTCTCTAAATCTCCCTATCTTGCTTTCGTGTTCCCTCTTTTTCTGGTTCATGTTAACCGCCCCCGATCATTTTGGGACTAAGGCTTGGTTGTTCTTGTTTGATTACCTTTTAGGGGGGGAGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGATTGGTTCTTATGGTTATTTGCTACTTTAAGTTACTTTTAGGTAGCAGTTGCTATTTCATTTAAAGCTGCGAGGAACTTATATTTGATACATTGTTGATATTGTCGTGCAGTTCCCAGAAACTTCAGGTTGTTGGAAGAACTTGAACGTGGTGAGAAAGGGATTGGAGATGGGAGTGTCAGCTATGGGATGGATGATAGTGATGATATTTACATGCGCTCTTGGACGGGAACTATCATTGGCCCTCACAATGTGAGTTGTGTATTTTTTGTCTTTTCTTATTTTACTACTTTTTCACAAGGGTACATCTCATCTATATCAATGTTCTAGATGATTCAGCTATTCATTATTTTTATTAAGATTATTAACTTATTATAAAGCTGGGTGTTTTTCACATAGAATAATGACAACACTTCTTTTCTGAGTGGTTTGTGCATAGAACGTAATTCCCTTTTGCAAGAGTTCTGGTAGTATAATAGATTTTTCAAGATCGAATATAGTGGTCATGATGTCCTCTAAAGTTGTTTAATTTAATGTAGAAATCCAGATTGTTTCACGTTTATATCGAACTGACTAGTGGAAGAAGCTCATTTTTTCCTTCATTGTCCAATGAGCTTTAAATTTCTATACTGGTCCCAGTTTGTACTGCAGTCAGTTTGGTTTCTGGACTTTTCCCTTTTTCTTCCCTTCTTCTTGGATTCATTTGATCTTGATTTGCTGGATTATATTGTTGCTTCAAGAGAAGTATTGGTGCCTGCTGTAGTTAATAGTGATTGCAAATTGCCTGTTGCTTGTGCTACATGGTTCATTTTCCTTTTTTTGGTTGTTTTTGTTTATTTGAAGATTTGTGCTGGTTTTGTGTCAGAGCGTACATGAAGGTCGCATTTATCAATTGAAGCTCTTCTGTGACAAAGATTATCCAGAGAAACCCCCAAGTGTTCGCTTCCACACACGAGTCAACATGACTTGTGTAAATCCTGAGAGTGGAATGGTAATGTTTATATTTTTCTGCCTGGTTGACGTGGAAATATGTTTTATATCCATTTTCTTACAGCCTGTTGAGGATGTCTATGTGAAGATTATACAATTTTTTAATGATAAATAATATTTCTGCACTATAAGGTCCCTAAGTCCCTTGCAGTTGGAACAGTGAAGCATATGTCGCATTTTTGTGTGTTCCTTGTTGTGAGTATTGTGACTCATATATTCATATGATAATGCAACTCCACCTCCAGATATTTATGAATGACAAATACACCCTTGGGATTAGTGTTGAATTACCATAGATATTGGCATGAAAATTCCCTTGCAAAAGTACCCAGATTTGTTGCCAGTCTTGTGGTATCAACGCCTACAAAACAATCATAACCGCTGATTAATATGTTTTGCACTCTTGCTCATCCATTAGGTTTCACATCCCACCTTTTCGTTTTGTATCATATACTGACAATACTGTACATGCAATATGCCTGACATCTGAGTCTTTGGTGAAAAGCAATGCTCCAACCAAGCTTTTTAACAATGGTTGTTCAATTTTATTCATGAAGTTGAGGTAGAAATCTGGAACGTTAGTTTTAGTATATAGGAATTGAACCTGCACAAGCCTATGACCTACCTGTGAAACCAATCTATTTGGATTACTGCATTATGACAAGGTGAAGTATTTGCTACTCTTTTAAGTAAGAAACTTATTGTTCTTACATTCAACTTGAATCTTAATGAGATCATTCAGTAATTGCATATGACCCGTCATATAGTGGGCTGATGTCCTGAAACTCCTGTTGAAATAGGATGTAATTGTTTTTATTAGCATTTAGTTAAATTTTCTATTTTAATTTTATTTCATGGCGTGTAGTGTGTATGTGAGTGTGAGGAGTCTTTGATTTTTAATATTGTGGGTGGCAGGTTGAACCAAAGAAGTTTGGAATGCTGGTAAACTGGCAGAGAGAGTACACTATGGAGGACATTCTGACTCAGCTGAGGAAAGAAATGGCTGCACCCCACAACCGAAAGCTTGTTCAACCTCCAGAAGGGACCTATTTCTAAGCTAAACCTACTTGTTTAGCAAACACTATCTTTCCAAGTATGGAGACCCTAAAACATCAGAACCTGAATGGCCTATAATTCAGTACATAGTTTTATGATTGCATGATGATTGATGTCTTCAATCGGATTCCTTAGTGTGTGTTCCCTGTAAGTCAGCTTTTAACTTTGAGACTTAAAATGTGAAGTCCTAGTCGACTGAACCACTCGTCTCTGTAATCTGTACGCTTAATTGCTGAGGGAAAGTGGTGAATTAGTACGTTGCTGAAATCATTGATTCACTGTTTTCGATGCCATTATATGCTTATGTGATTGTAGGTGTTTTCCATTTTCAAATATTGTTCAGTGTTCTTTCTGTATGATACTATTTGAATGATTTATGAGGAATCTCCAGCACTAACAAAATGGCACAAAGTCTTCCAACTTTTCG GAACACCCTATGATTGAGAATTTCCCAAAATAAAAGAAGCTTGACATTTTCAGATTCTTGACTCGTACCTGGAGACTCGTGAGTCGTGATCCTCCTTTTAACACCCACAACCCAAAACCTCTTCAGTCTTCACCATTCCCCCTCTCTCTCATACACTTTGCGTCAATCTTCAGTTCCCCCTTCCTTTCGATTTTATTCTCCAAATATGACGATTGGTTCTGGAGGATCTAGCGTCGTCGTTCCCAGAAACTTCAGGTTGTTGGAAGAACTTGAACGTGGTGAGAAAGGGATTGGAGATGGGAGTGTCAGCTATGGGATGGATGATAGTGATGATATTTACATGCGCTCTTGGACGGGAACTATCATTGGCCCTCACAATAGCGTACATGAAGGTCGCATTTATCAATTGAAGCTCTTCTGTGACAAAGATTATCCAGAGAAACCCCCAAGTGTTCGCTTCCACACACGAGTCAACATGACTTGTGTAAATCCTGAGAGTGGAATGGTTGAACCAAAGAAGTTTGGAATGCTGGTAAACTGGCAGAGAGAGTACACTATGGAGGACATTCTGACTCAGCTGAGGAAAGAAATGGCTGCACCCCACAACCGAAAGCTTGTTCAACCTCCAGAAGGGACCTATTTCTAAGCTAAACCTACTTGTTTAGCAAACACTATCTTTCCAAGTATGGAGACCCTAAAACATCAGAACCTGAATGGCCTATAATTCAGTACATAGTTTTATGATTGCATGATGATTGATGTCTTCAATCGGATTCCTTAGTGTGTGTTCCCTGTAAGTCAGCTTTTAACTTTGAGACTTAAAATGTGAAGTCCTAGTCGACTGAACCACTCGTCTCTGTAATCTGTACGCTTAATTGCTGAGGGAAAGTGGTGAATTAGTACGTTGCTGAAATCATTGATTCACTGTTTTCGATGCCATTATATGCTTATGTGATTGTAGGTGTTTTCCATTTTCAAATATTGTTCAGTGTTCTTTCTGTATGATACTATTTGAATGATTTATGAGGAATCTCCAGCACTAACAAAATGGCACAAAGTCTTCCAACTTTTCG ATGACGATTGGTTCTGGAGGATCTAGCGTCGTCGTTCCCAGAAACTTCAGGTTGTTGGAAGAACTTGAACGTGGTGAGAAAGGGATTGGAGATGGGAGTGTCAGCTATGGGATGGATGATAGTGATGATATTTACATGCGCTCTTGGACGGGAACTATCATTGGCCCTCACAATAGCGTACATGAAGGTCGCATTTATCAATTGAAGCTCTTCTGTGACAAAGATTATCCAGAGAAACCCCCAAGTGTTCGCTTCCACACACGAGTCAACATGACTTGTGTAAATCCTGAGAGTGGAATGGTTGAACCAAAGAAGTTTGGAATGCTGGTAAACTGGCAGAGAGAGTACACTATGGAGGACATTCTGACTCAGCTGAGGAAAGAAATGGCTGCACCCCACAACCGAAAGCTTGTTCAACCTCCAGAAGGGACCTATTTCTAA MTIGSGGSSVVVPRNFRLLEELERGEKGIGDGSVSYGMDDSDDIYMRSWTGTIIGPHNSVHEGRIYQLKLFCDKDYPEKPPSVRFHTRVNMTCVNPESGMVEPKKFGMLVNWQREYTMEDILTQLRKEMAAPHNRKLVQPPEGTYF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05014.1 vs. NCBI nr
Match: gi|902211662|gb|KNA16788.1| (hypothetical protein SOVF_085650 [Spinacia oleracea]) HSP 1 Score: 313.9 bits (803), Expect = 1.500e-82 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Spo05014.1 vs. NCBI nr
Match: gi|731377923|ref|XP_010668019.1| (PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 309.7 bits (792), Expect = 2.700e-81 Identity = 142/146 (97.26%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Spo05014.1 vs. NCBI nr
Match: gi|902176364|gb|KNA08747.1| (hypothetical protein SOVF_159870 isoform B [Spinacia oleracea]) HSP 1 Score: 305.1 bits (780), Expect = 6.700e-80 Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 1
BLAST of Spo05014.1 vs. NCBI nr
Match: gi|731348284|ref|XP_010685417.1| (PREDICTED: ubiquitin-conjugating enzyme E2 variant 1D-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 302.0 bits (772), Expect = 5.700e-79 Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1
BLAST of Spo05014.1 vs. NCBI nr
Match: gi|572152953|ref|NP_001275801.1| (ubiquitin-conjugating enzyme variant [Citrus sinensis]) HSP 1 Score: 298.9 bits (764), Expect = 4.800e-78 Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 1
BLAST of Spo05014.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RBB0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_085650 PE=4 SV=1) HSP 1 Score: 313.9 bits (803), Expect = 1.000e-82 Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Spo05014.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B1V3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_013610 PE=4 SV=1) HSP 1 Score: 309.7 bits (792), Expect = 1.900e-81 Identity = 142/146 (97.26%), Postives = 146/146 (100.00%), Query Frame = 1
BLAST of Spo05014.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QNC8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_159870 PE=4 SV=1) HSP 1 Score: 305.1 bits (780), Expect = 4.700e-80 Identity = 140/146 (95.89%), Postives = 143/146 (97.95%), Query Frame = 1
BLAST of Spo05014.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTN6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g170860 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 4.000e-79 Identity = 137/146 (93.84%), Postives = 144/146 (98.63%), Query Frame = 1
BLAST of Spo05014.1 vs. UniProtKB/TrEMBL
Match: V4UUK6_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012997mg PE=4 SV=1) HSP 1 Score: 298.9 bits (764), Expect = 3.400e-78 Identity = 135/146 (92.47%), Postives = 144/146 (98.63%), Query Frame = 1
BLAST of Spo05014.1 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1) HSP 1 Score: 282.3 bits (721), Expect = 2.900e-75 Identity = 127/146 (86.99%), Postives = 138/146 (94.52%), Query Frame = 1
BLAST of Spo05014.1 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1) HSP 1 Score: 277.7 bits (709), Expect = 7.200e-74 Identity = 126/146 (86.30%), Postives = 140/146 (95.89%), Query Frame = 1
BLAST of Spo05014.1 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1) HSP 1 Score: 235.0 bits (598), Expect = 5.400e-61 Identity = 104/141 (73.76%), Postives = 122/141 (86.52%), Query Frame = 1
BLAST of Spo05014.1 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1) HSP 1 Score: 228.4 bits (581), Expect = 5.000e-59 Identity = 101/141 (71.63%), Postives = 121/141 (85.82%), Query Frame = 1
BLAST of Spo05014.1 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1) HSP 1 Score: 180.3 bits (456), Expect = 1.600e-44 Identity = 76/135 (56.30%), Postives = 104/135 (77.04%), Query Frame = 1
BLAST of Spo05014.1 vs. TAIR (Arabidopsis)
Match: AT2G36060.2 (MMS ZWEI homologue 3) HSP 1 Score: 273.1 bits (697), Expect = 1.000e-73 Identity = 126/147 (85.71%), Postives = 140/147 (95.24%), Query Frame = 1
BLAST of Spo05014.1 vs. TAIR (Arabidopsis)
Match: AT3G52560.4 (ubiquitin E2 variant 1D-4) HSP 1 Score: 268.9 bits (686), Expect = 1.900e-72 Identity = 126/164 (76.83%), Postives = 137/164 (83.54%), Query Frame = 1
BLAST of Spo05014.1 vs. TAIR (Arabidopsis)
Match: AT1G23260.1 (MMS ZWEI homologue 1) HSP 1 Score: 235.0 bits (598), Expect = 3.000e-62 Identity = 104/141 (73.76%), Postives = 122/141 (86.52%), Query Frame = 1
BLAST of Spo05014.1 vs. TAIR (Arabidopsis)
Match: AT1G70660.1 (MMS ZWEI homologue 2) HSP 1 Score: 228.4 bits (581), Expect = 2.800e-60 Identity = 101/141 (71.63%), Postives = 121/141 (85.82%), Query Frame = 1
BLAST of Spo05014.1 vs. TAIR (Arabidopsis)
Match: AT1G50490.1 (ubiquitin-conjugating enzyme 20) HSP 1 Score: 54.7 bits (130), Expect = 5.600e-8 Identity = 37/118 (31.36%), Postives = 55/118 (46.61%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05014.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05014.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05014.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo05014.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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