Spo05204 (gene) | SpinachBase

Overview


Name	Spo05204
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Pre-mRNA branch site p14-like family protein
Location	SpoScf_02973 : 3096 .. 3467 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGATCAGCCTGAGAAAAGCCAACACTCGACTACCCCCTGAAGTAAACCGAGTTCTCTATGTTCGAAATCTGCCCTTCAACATCACCAGCGAAGAGATGTACGACATTTTTGGAAAGTACGGAGCAATTCGCCAAATTCGTGTCGGAACAAACAAGGACACTCGAGGAACAGCGTTCGTGGTGTACGAGGATATATACGATGCTAAGACTGCCGTTGATCATCTGTCTGGGTTCAATGTCGCAAATCGGTACTTGATTGTGTTGTATTATCAGCCTGCTAAGATGAACAAGAAGATTGATTTTAAGAAGAAGGAAGAGGAGATTACCAAATTGCAGGAGAAATATGGTGTTTCTACTAAAGATAAGTGA

mRNA sequence

ATGTCGATCAGCCTGAGAAAAGCCAACACTCGACTACCCCCTGAAGTAAACCGAGTTCTCTATGTTCGAAATCTGCCCTTCAACATCACCAGCGAAGAGATGTACGACATTTTTGGAAAGTACGGAGCAATTCGCCAAATTCGTGTCGGAACAAACAAGGACACTCGAGGAACAGCGTTCGTGGTGTACGAGGATATATACGATGCTAAGACTGCCGTTGATCATCTGTCTGGGTTCAATGTCGCAAATCGGTACTTGATTGTGTTGTATTATCAGCCTGCTAAGATGAACAAGAAGATTGATTTTAAGAAGAAGGAAGAGGAGATTACCAAATTGCAGGAGAAATATGGTGTTTCTACTAAAGATAAGTGA

Coding sequence (CDS)

ATGTCGATCAGCCTGAGAAAAGCCAACACTCGACTACCCCCTGAAGTAAACCGAGTTCTCTATGTTCGAAATCTGCCCTTCAACATCACCAGCGAAGAGATGTACGACATTTTTGGAAAGTACGGAGCAATTCGCCAAATTCGTGTCGGAACAAACAAGGACACTCGAGGAACAGCGTTCGTGGTGTACGAGGATATATACGATGCTAAGACTGCCGTTGATCATCTGTCTGGGTTCAATGTCGCAAATCGGTACTTGATTGTGTTGTATTATCAGCCTGCTAAGATGAACAAGAAGATTGATTTTAAGAAGAAGGAAGAGGAGATTACCAAATTGCAGGAGAAATATGGTGTTTCTACTAAAGATAAGTGA

Protein sequence

MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTKDK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05204.1	Spo05204.1	mRNA

Homology

[Close]

BLAST of Spo05204.1 vs. NCBI nr
Match: gi|902212881|gb|KNA17115.1| (hypothetical protein SOVF_083110 [Spinacia oleracea])

HSP 1 Score: 245.7 bits (626), Expect = 4.100e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


		  
Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 120
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 120

Query: 121 KDK 124
           KDK
Sbjct: 121 KDK 123

[Close]

BLAST of Spo05204.1 vs. NCBI nr
Match: gi|731330951|ref|XP_010676406.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 245.4 bits (625), Expect = 5.300e-62
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1


		  
Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 120
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK+DFKKKEEEITKLQEKYGVST
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKVDFKKKEEEITKLQEKYGVST 120

Query: 121 KDK 124
           KDK
Sbjct: 121 KDK 123

[Close]

BLAST of Spo05204.1 vs. NCBI nr
Match: gi|224059684|ref|XP_002299969.1| (Pre-mRNA branch site p14-like family protein [Populus trichocarpa])

HSP 1 Score: 231.5 bits (589), Expect = 8.000e-58
Identity = 114/122 (93.44%), Postives = 118/122 (96.72%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 4   TISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 63

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK D KKKEEEI K+QEKYGVSTK
Sbjct: 64  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKFDQKKKEEEIAKMQEKYGVSTK 123

Query: 122 DK 124
           DK
Sbjct: 124 DK 125

[Close]

BLAST of Spo05204.1 vs. NCBI nr
Match: gi|901821496|gb|KMZ73352.1| (Pre-mRNA branch site p14-like protein [Zostera marina])

HSP 1 Score: 229.2 bits (583), Expect = 4.000e-57
Identity = 111/122 (90.98%), Postives = 119/122 (97.54%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           SISLRK NTRLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIR+GTN+DTRGTAFV
Sbjct: 3   SISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNRDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQP KMNKK+D KKKE+EI+++QEKYGVSTK
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPTKMNKKVDQKKKEDEISRMQEKYGVSTK 122

Query: 122 DK 124
           DK
Sbjct: 123 DK 124

[Close]

BLAST of Spo05204.1 vs. NCBI nr
Match: gi|1012201794|ref|XP_015973395.1| (PREDICTED: splicing factor 3B subunit 6-like protein [Arachis duranensis])

HSP 1 Score: 228.8 bits (582), Expect = 5.200e-57
Identity = 113/122 (92.62%), Postives = 118/122 (96.72%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 3   AISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQ AKM+KK D KKKE+EITK+QEKYGVSTK
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEITKMQEKYGVSTK 122

Query: 122 DK 124
           DK
Sbjct: 123 DK 124

[Close]

BLAST of Spo05204.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCB9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083110 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 2.900e-62
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


		  
Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 120
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 120

Query: 121 KDK 124
           KDK
Sbjct: 121 KDK 123

[Close]

BLAST of Spo05204.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BIU7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017830 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 3.700e-62
Identity = 122/123 (99.19%), Postives = 123/123 (100.00%), Query Frame = 1


		  
Query: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60
           MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF
Sbjct: 1   MSISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAF 60

Query: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 120
           VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK+DFKKKEEEITKLQEKYGVST
Sbjct: 61  VVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKVDFKKKEEEITKLQEKYGVST 120

Query: 121 KDK 124
           KDK
Sbjct: 121 KDK 123

[Close]

BLAST of Spo05204.1 vs. UniProtKB/TrEMBL
Match: B9GG60_POPTR (Pre-mRNA branch site p14-like family protein OS=Populus trichocarpa GN=POPTR_0001s28000g PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 5.600e-58
Identity = 114/122 (93.44%), Postives = 118/122 (96.72%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK NTRLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIR+GTNKDTRGTAFV
Sbjct: 4   TISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 63

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK D KKKEEEI K+QEKYGVSTK
Sbjct: 64  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKFDQKKKEEEIAKMQEKYGVSTK 123

Query: 122 DK 124
           DK
Sbjct: 124 DK 125

[Close]

BLAST of Spo05204.1 vs. UniProtKB/TrEMBL
Match: A0A0K9PYP0_ZOSMR (Pre-mRNA branch site p14-like protein OS=Zostera marina GN=ZOSMA_14G01160 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 2.800e-57
Identity = 111/122 (90.98%), Postives = 119/122 (97.54%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           SISLRK NTRLPPEVNRVLYVRNLPFNI+SEEMYDIFGKYGAIRQIR+GTN+DTRGTAFV
Sbjct: 3   SISLRKGNTRLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRIGTNRDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQP KMNKK+D KKKE+EI+++QEKYGVSTK
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPTKMNKKVDQKKKEDEISRMQEKYGVSTK 122

Query: 122 DK 124
           DK
Sbjct: 123 DK 124

[Close]

BLAST of Spo05204.1 vs. UniProtKB/TrEMBL
Match: A0A059DAI3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03747 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 1.400e-56
Identity = 111/122 (90.98%), Postives = 116/122 (95.08%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK N RLPPEVNR LYVRNLPFNITSEEMYDIFGKYGAIRQIR+GT+KDTRGTAFV
Sbjct: 3   TISLRKGNARLPPEVNRALYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTSKDTRGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKK D KKKEEE+ K+QEKYGVSTK
Sbjct: 63  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKFDQKKKEEELAKMQEKYGVSTK 122

Query: 122 DK 124
           DK
Sbjct: 123 DK 124

[Close]

BLAST of Spo05204.1 vs. ExPASy Swiss-Prot
Match: SF3B6_ARATH (Splicing factor 3B subunit 6-like protein OS=Arabidopsis thaliana GN=At5g12190 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 9.800e-56
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK+NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+G +K T+GTAFV
Sbjct: 3   TISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKM+KK D KK E+EITKLQEKYGVSTK
Sbjct: 63  VYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTK 122

Query: 122 DK 124
           DK
Sbjct: 123 DK 124

[Close]

BLAST of Spo05204.1 vs. ExPASy Swiss-Prot
Match: SF3B6_MOUSE (Splicing factor 3B subunit 6 OS=Mus musculus GN=Sf3b6 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.300e-43
Identity = 80/115 (69.57%), Postives = 98/115 (85.22%), Query Frame = 1


		  
Query: 6   RKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYED 65
           ++AN RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIRVG   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 66  IYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 121
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K+D KKKEE++  L+EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of Spo05204.1 vs. ExPASy Swiss-Prot
Match: SF3B6_HUMAN (Splicing factor 3B subunit 6 OS=Homo sapiens GN=SF3B6 PE=1 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 7.300e-43
Identity = 80/115 (69.57%), Postives = 98/115 (85.22%), Query Frame = 1


		  
Query: 6   RKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYED 65
           ++AN RLPPEVNR+LY+RNLP+ IT+EEMYDIFGKYG IRQIRVG   +TRGTA+VVYED
Sbjct: 7   KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66

Query: 66  IYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVST 121
           I+DAK A DHLSGFNV NRYL+VLYY   +  +K+D KKKEE++  L+EKYG++T
Sbjct: 67  IFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINT 121

[Close]

BLAST of Spo05204.1 vs. ExPASy Swiss-Prot
Match: SF3B6_DROME (Splicing factor 3B subunit 6-like protein OS=Drosophila melanogaster GN=CG13298 PE=1 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.200e-41
Identity = 78/117 (66.67%), Postives = 96/117 (82.05%), Query Frame = 1


		  
Query: 6   RKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYED 65
           ++ + RLPPEVNR+LYVRNLP+ ITS+EMYDIFGK+GAIRQIRVG   +TRGTAFVVYED
Sbjct: 3   KRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYED 62

Query: 66  IYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTKD 123
           I+DAK A DHLSGFNV NRYL+VLYYQ  K  K++D  KK+EE+  ++ KY + T +
Sbjct: 63  IFDAKNACDHLSGFNVCNRYLVVLYYQSNKAFKRVDMDKKQEELNNIKAKYNLKTPE 119

[Close]

BLAST of Spo05204.1 vs. ExPASy Swiss-Prot
Match: SF3B6_CAEEL (Splicing factor 3B subunit 6-like protein OS=Caenorhabditis elegans GN=C50D2.5 PE=3 SV=2)

HSP 1 Score: 157.5 bits (397), Expect = 9.200e-38
Identity = 69/108 (63.89%), Postives = 93/108 (86.11%), Query Frame = 1


		  
Query: 11  RLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAK 70
           +LPPEVNR+LY++NLP+ IT+EEMY+IFGK+GA+RQIRVG   +TRGTAFVVYEDI+DAK
Sbjct: 12  KLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAK 71

Query: 71  TAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGV 119
           TA +HLSG+NV+NRYL+VLYYQ  K  K++D +K   ++  ++E+YG+
Sbjct: 72  TACEHLSGYNVSNRYLVVLYYQATKAWKRMDTEKARTKLEDIKERYGI 119

[Close]

BLAST of Spo05204.1 vs. TAIR (Arabidopsis)
Match: AT5G12190.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 217.2 bits (552), Expect = 5.500e-57
Identity = 108/122 (88.52%), Postives = 115/122 (94.26%), Query Frame = 1


		  
Query: 2   SISLRKANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFV 61
           +ISLRK+NTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIR+G +K T+GTAFV
Sbjct: 3   TISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFV 62

Query: 62  VYEDIYDAKTAVDHLSGFNVANRYLIVLYYQPAKMNKKIDFKKKEEEITKLQEKYGVSTK 121
           VYEDIYDAK AVDHLSGFNVANRYLIVLYYQ AKM+KK D KK E+EITKLQEKYGVSTK
Sbjct: 63  VYEDIYDAKNAVDHLSGFNVANRYLIVLYYQHAKMSKKFDQKKSEDEITKLQEKYGVSTK 122

Query: 122 DK 124
           DK
Sbjct: 123 DK 124

[Close]

BLAST of Spo05204.1 vs. TAIR (Arabidopsis)
Match: AT2G14870.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 112.5 bits (280), Expect = 1.900e-25
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 1


		  
Query: 7  KANTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDI 66
          K N RLPPEV R+LY+ NLPF+ITSE+ YD+FG+Y  IRQ+R+G  K T+GTAFVVYEDI
Sbjct: 9  KQNPRLPPEVTRLLYICNLPFSITSEDTYDLFGRYSTIRQVRIGCEKGTKGTAFVVYEDI 68

Query: 67 YDAKTAVDHL 77
          YDAK AVDHL
Sbjct: 69 YDAKKAVDHL 78

[Close]

BLAST of Spo05204.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 51.2 bits (121), Expect = 5.200e-7
Identity = 27/72 (37.50%), Postives = 39/72 (54.17%), Query Frame = 1


		  
Query: 17 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHL 76
          +R +YV NLP +I   E+ D+F KYG + QI +       G AFV +ED  DA  A+   
Sbjct: 6  SRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAIYGR 65

Query: 77 SGFNVANRYLIV 89
           G++    +L V
Sbjct: 66 DGYDFDGHHLRV 77

[Close]

BLAST of Spo05204.1 vs. TAIR (Arabidopsis)
Match: AT5G07290.1 (MEI2-like 4)

HSP 1 Score: 49.7 bits (117), Expect = 1.500e-6
Identity = 24/67 (35.82%), Postives = 43/67 (64.18%), Query Frame = 1


		  
Query: 20  LYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHLSGF 79
           L+V NL  +I++EE++ IF  YG IR++R   +++++   ++ + D+  AK A+  L+G 
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVRRTMHENSQ--VYIEFFDVRKAKVALQGLNGL 356

Query: 80  NVANRYL 87
            VA R L
Sbjct: 357 EVAGRQL 361

[Close]

BLAST of Spo05204.1 vs. TAIR (Arabidopsis)
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.500e-6
Identity = 24/64 (37.50%), Postives = 37/64 (57.81%), Query Frame = 1


		  
Query: 17 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRVGTNKDTRGTAFVVYEDIYDAKTAVDHL 76
          +R +YV NLP +I   E+ D+F KYG + QI +       G AFV ++D  DA+ A+   
Sbjct: 6  SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAIHGR 65

Query: 77 SGFN 81
           G++
Sbjct: 66 DGYD 69

The following BLAST results are available for this feature:

BLAST of Spo05204.1 vs. NCBI nr
BLAST of Spo05204.1 vs. UniProtKB/TrEMBL
BLAST of Spo05204.1 vs. ExPASy Swiss-Prot
BLAST of Spo05204.1 vs. TAIR (Arabidopsis)

BLAST of Spo05204.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902212881\|gb\|KNA17115.1\|	4.1e-62	100.	hypothetical protein SOVF_0831...	[more]
gi\|731330951\|ref\|XP_010676406.1\|	5.3e-62	99.1	PREDICTED: splicing factor 3B ...	[more]
gi\|224059684\|ref\|XP_002299969.1\|	8.0e-58	93.4	Pre-mRNA branch site p14-like ...	[more]
gi\|901821496\|gb\|KMZ73352.1\|	4.0e-57	90.9	Pre-mRNA branch site p14-like ...	[more]
gi\|1012201794\|ref\|XP_015973395.1\|	5.2e-57	92.6	PREDICTED: splicing factor 3B ...	[more]

BLAST of Spo05204.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RCB9_SPIOL	2.9e-62	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BIU7_BETVU	3.7e-62	99.1	Uncharacterized protein OS=Bet...	[more]
B9GG60_POPTR	5.6e-58	93.4	Pre-mRNA branch site p14-like ...	[more]
A0A0K9PYP0_ZOSMR	2.8e-57	90.9	Pre-mRNA branch site p14-like ...	[more]
A0A059DAI3_EUCGR	1.4e-56	90.9	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo05204.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SF3B6_ARATH	9.8e-56	88.5	Splicing factor 3B subunit 6-l...	[more]
SF3B6_MOUSE	7.3e-43	69.5	Splicing factor 3B subunit 6 O...	[more]
SF3B6_HUMAN	7.3e-43	69.5	Splicing factor 3B subunit 6 O...	[more]
SF3B6_DROME	5.2e-41	66.6	Splicing factor 3B subunit 6-l...	[more]
SF3B6_CAEEL	9.2e-38	63.8	Splicing factor 3B subunit 6-l...	[more]

BLAST of Spo05204.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G12190.1	5.5e-57	88.5	RNA-binding (RRM/RBD/RNP motif...	[more]
AT2G14870.1	1.9e-25	71.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G02430.2	5.2e-7	37.5	RNA-binding (RRM/RBD/RNP motif...	[more]
AT5G07290.1	1.5e-6	35.8	MEI2-like 4	[more]
AT1G02840.1	1.5e-6	37.5	RNA-binding (RRM/RBD/RNP motif...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 20..86 score: 5.7
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 19..89 score: 2.0
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 18..93 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 17..100 score: 1.6
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 6..99 score: 1.09
None	No IPR available	unknown	Coil	Coil	coord: 95..115 scor
None	No IPR available	PANTHER	PTHR12785	FAMILY NOT NAMED	coord: 3..121 score: 1.2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03123	0.99	Barchart \| Table
Spo20521	0.66	Barchart \| Table