Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGATTGGTATAAAGAACTCACCATTACATAGGTTTACTAAGCCTACCTCTGCTGGCCGGAAAGTTCCTAGTGATGAGAGCTATAACCCTTTTGATTCCGATGATGAGTCTGATAAGAAGCCACCTACTCACGGATCCTCTACAAAACAACCTTCTGGACCTTCGAAGAATTTACCAAGTTCCTCCATGAGCAACCCTTTTGATGATGACATTGATAATCGAGAGAGAGAAGTGACTCCTTCCACCTCTAAATACGCTTTCACCTATGCGCAAAAAAACAAATACAAGAACGATTTCTATGACTCAGGAGGTGTGGACAATCAAAATATGGAGGAACTAGAAAATTATTCTGTGTACAAATCTGAGGAGACAACAAAGGCTGTTGACAACTGTTTGAGGATTGCTGAGGGCATAAGAGAAGATGGTACTAAGACATTACTCACTCTCCATCAGCAAGGTGAACAAATTAGAAGAACCCATGATGAGGCTGTACATATCGACTATGATTTAAGTCGGGTATGAAGCTTTTAATTTTTTACTTTACCAATAAGAATGTACAAAGTATTTCGTTTAGGAATATACTCTCATTCTGAAGTGCTATTACTCCCTCAAATTGTTGCATCTGGATCTAAGTTACCATACTTACTGCATCATATTATCTCTGTTACCAGTTCATAAGGTTGTTGAACCACTGGTCATATAATGTCTATCTGTTTCGGTTAGAAGTTAAGAAGAGTGTCATAGATGAGTCAGAGGAATATATCTTGTGATCTTCGTTGTTTGTGCGTGTGTCTCTCTATCTCTGATAATCAACATTCTAATACCCCCCCCCCCCCCAACACACACATACAGGGTGACATGCTCACGACCTTTTCCCTCGTATTCGAGAGAGAGATTTGCTTATTTATCAAGCATTGAAATGTGAATAATATGATCTTGTTTTTCTTTGGCTTTTGAACTATGCACTTGACACATTAGACGCTAGTGGTTACTAGTAGGATTTAACTTTGTTGCTGTTTCAATGTGGATTGGTGGATGTCTTTGAATATTCTGCATAATTCCTTCGATGTATTAGGATTCTGGTTACTACTTCTTTCTGGTTTCCTGAAACTTATCAATTCCTTTAGTTTAAGCATTTAAGGAGCCAAGAGTAAATTTTTGTTTGATGATTGCAGGGGGAGAAGCTTTTAGGAAGTCTTGGGGGGTTGTTTTCTAGGACATGGAAGCCAAAGAAGACTACTCCAGTTAAAGGCCCTGTTATATTCAGAGGTTTGTATCATTTCTTTTTGTTTTAAAAAACGAAGCTGTAGATATAGCTCTGCCACTGATTAATCTCATTTTCAACAGATGATCCTATCCGCAGTAAGGGTAACCACTTGGAACAGAGGGAGAGGCTTGGATTGACAAACTTGCCAAATGGGCGTTCTAAATCACGGACTCCACCCCCTGAACCCACTAACGCGTTGCAAAAAGTCGAGGTTTGTATTTCTTACTATGTACTATGTATAAAGCTTACTAACTTCTTTAAATTTGGTGGGAGCTTTATCAAATGCTTTCAGTCTCACCAAGTTACCTTTATTTAACGTCGACATGTATGATGTATCTGGTTCTGTATTCCCTCTTCGTACAGATTTAAATAGTAACTTACTCACATCACATAAGTACTATCTTAGGTTGTTTGGAAAAAGTTGATACCTTTCCTAACACTCCCTTTGTTTTTTGGTTGGTTAGACTAACCATATATTCTCACCATTACAAATATCAAATCAATATGATGTAGGATCTTGATAGGTTCGTGTCAATATATGTTTTCAAAATATCGACCTTTTTTAGTTTCTATTTTTAGTTATTGGATACACTAATGGTAAAAGTCGAGCATTGAAGACCGCAAAAATTGAAATGTAACCAGCGTAAAAGGAATGGAGTATATACTAGGTGGAAAATTGCCGTTATTGCACTCCCCTAGTTGAGGTGGTTTTCATACCAAATGCCGCATTCACTCAACATGGGCTTTTTCATATTAGAGGAAAATGGTTTATATTATACTCCATACTCCATAGTATTAGACCATTTCCATCATCTGTCATCACTTTAACTTATGGCATATCAGGAGTACGGACTCTAACCTTTATACTATTGTTTTTTATTTCTCCTGTGAAAACATGTCGACCATGTCCTGTTTTTTAATTATAGGGTTGTGTGGTAGCCGTAATTCGACCACTAGTTCCCGACATCACTAAATCATGTTTCAACTATAAACTTGTTGTTAAGTACTTCCGTAATTGATTTGATGACTTTTCTCCCCTGTAAATGTCGTTTACCCCCTAACTGTTCAAACCCCACCTTTGGCTCTTGTGTTACTTGGGCTACTGCATTTCATAGTATTAATAAGCGATTGCTCTTCTACTATCTTCGTTGTAACAGGTGGAAAAGGTGAAACAAGATGACGCCCTGTCAGACTTGAGTGATATTTTAGGCGAGCTGAAGGTTATGGCGCAAGACATGGGAAATGAGATTGAGTGGTTAGTCTTGCTTTCTTTACGCCTTACAATATCTTGTATTCTCCATCCTCGGACTCGAGCCTTGCAAATGCTACATTGCTACACCCCTCAAAAGACCGAGGGTTAGCGACATATGTTGTTGTTACTGCCAATTGTTGTGTCAAATTAAGCCTGTTTTTAAGATGAAATTTTACTGGAATCATTTCAGGCAAACCAAATCACTGAATGGCCTTGATGATGATGTGGGAACCTTGGCTGGTAGAGTCAAAGATGCCAACCAACGAGGGCGCCGCTTGCTTGGGAAATGATAATCTCGAATGGCCATTTTACTTTGGATGGCCTTGCTAGATTTCATGTTCTAACTACTTTGATTGTTGGTTGGGTAATTCTGTTAGCTCAAGAGTTTGGGAAATAGGGAAGAGAAACAGGAGGATTTGAACTCCCATGAAAATGTCTTGTGTTTGCACTTGATCTGTATTTGATGTTATATTAGCAATACTGAAACCTTTTTAGCAATTTATCACATACTTTAATTTGAAAAGAGTATCTCCTGGATCTATCAACTGTCCTTTCTTGTACATATTATGTTTACTTACTTCAAATTTACATATCAACTGTTTTGGGTGC ATGATTGGTATAAAGAACTCACCATTACATAGGTTTACTAAGCCTACCTCTGCTGGCCGGAAAGTTCCTAGTGATGAGAGCTATAACCCTTTTGATTCCGATGATGAGTCTGATAAGAAGCCACCTACTCACGGATCCTCTACAAAACAACCTTCTGGACCTTCGAAGAATTTACCAAGTTCCTCCATGAGCAACCCTTTTGATGATGACATTGATAATCGAGAGAGAGAAGTGACTCCTTCCACCTCTAAATACGCTTTCACCTATGCGCAAAAAAACAAATACAAGAACGATTTCTATGACTCAGGAGGTGTGGACAATCAAAATATGGAGGAACTAGAAAATTATTCTGTGTACAAATCTGAGGAGACAACAAAGGCTGTTGACAACTGTTTGAGGATTGCTGAGGGCATAAGAGAAGATGGTACTAAGACATTACTCACTCTCCATCAGCAAGGTGAACAAATTAGAAGAACCCATGATGAGGCTGTACATATCGACTATGATTTAAGTCGGGGGGAGAAGCTTTTAGGAAGTCTTGGGGGGTTGTTTTCTAGGACATGGAAGCCAAAGAAGACTACTCCAGTTAAAGGCCCTGTTATATTCAGAGATGATCCTATCCGCAGTAAGGGTAACCACTTGGAACAGAGGGAGAGGCTTGGATTGACAAACTTGCCAAATGGGCGTTCTAAATCACGGACTCCACCCCCTGAACCCACTAACGCGTTGCAAAAAGTCGAGGTGGAAAAGGTGAAACAAGATGACGCCCTGTCAGACTTGAGTGATATTTTAGGCGAGCTGAAGGTTATGGCGCAAGACATGGGAAATGAGATTGAGTGGCAAACCAAATCACTGAATGGCCTTGATGATGATGTGGGAACCTTGGCTGGTAGAGTCAAAGATGCCAACCAACGAGGGCGCCGCTTGCTTGGGAAATGATAATCTCGAATGGCCATTTTACTTTGGATGGCCTTGCTAGATTTCATGTTCTAACTACTTTGATTGTTGGTTGGGTAATTCTGTTAGCTCAAGAGTTTGGGAAATAGGGAAGAGAAACAGGAGGATTTGAACTCCCATGAAAATGTCTTGTGTTTGCACTTGATCTGTATTTGATGTTATATTAGCAATACTGAAACCTTTTTAGCAATTTATCACATACTTTAATTTGAAAAGAGTATCTCCTGGATCTATCAACTGTCCTTTCTTGTACATATTATGTTTACTTACTTCAAATTTACATATCAACTGTTTTGGGTGC ATGATTGGTATAAAGAACTCACCATTACATAGGTTTACTAAGCCTACCTCTGCTGGCCGGAAAGTTCCTAGTGATGAGAGCTATAACCCTTTTGATTCCGATGATGAGTCTGATAAGAAGCCACCTACTCACGGATCCTCTACAAAACAACCTTCTGGACCTTCGAAGAATTTACCAAGTTCCTCCATGAGCAACCCTTTTGATGATGACATTGATAATCGAGAGAGAGAAGTGACTCCTTCCACCTCTAAATACGCTTTCACCTATGCGCAAAAAAACAAATACAAGAACGATTTCTATGACTCAGGAGGTGTGGACAATCAAAATATGGAGGAACTAGAAAATTATTCTGTGTACAAATCTGAGGAGACAACAAAGGCTGTTGACAACTGTTTGAGGATTGCTGAGGGCATAAGAGAAGATGGTACTAAGACATTACTCACTCTCCATCAGCAAGGTGAACAAATTAGAAGAACCCATGATGAGGCTGTACATATCGACTATGATTTAAGTCGGGGGGAGAAGCTTTTAGGAAGTCTTGGGGGGTTGTTTTCTAGGACATGGAAGCCAAAGAAGACTACTCCAGTTAAAGGCCCTGTTATATTCAGAGATGATCCTATCCGCAGTAAGGGTAACCACTTGGAACAGAGGGAGAGGCTTGGATTGACAAACTTGCCAAATGGGCGTTCTAAATCACGGACTCCACCCCCTGAACCCACTAACGCGTTGCAAAAAGTCGAGGTGGAAAAGGTGAAACAAGATGACGCCCTGTCAGACTTGAGTGATATTTTAGGCGAGCTGAAGGTTATGGCGCAAGACATGGGAAATGAGATTGAGTGGCAAACCAAATCACTGAATGGCCTTGATGATGATGTGGGAACCTTGGCTGGTAGAGTCAAAGATGCCAACCAACGAGGGCGCCGCTTGCTTGGGAAATGA MIGIKNSPLHRFTKPTSAGRKVPSDESYNPFDSDDESDKKPPTHGSSTKQPSGPSKNLPSSSMSNPFDDDIDNREREVTPSTSKYAFTYAQKNKYKNDFYDSGGVDNQNMEELENYSVYKSEETTKAVDNCLRIAEGIREDGTKTLLTLHQQGEQIRRTHDEAVHIDYDLSRGEKLLGSLGGLFSRTWKPKKTTPVKGPVIFRDDPIRSKGNHLEQRERLGLTNLPNGRSKSRTPPPEPTNALQKVEVEKVKQDDALSDLSDILGELKVMAQDMGNEIEWQTKSLNGLDDDVGTLAGRVKDANQRGRRLLGK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05264.1 vs. NCBI nr
Match: gi|902189181|gb|KNA11307.1| (hypothetical protein SOVF_136430 [Spinacia oleracea]) HSP 1 Score: 618.2 bits (1593), Expect = 7.700e-174 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 1
BLAST of Spo05264.1 vs. NCBI nr
Match: gi|731334828|ref|XP_010678419.1| (PREDICTED: SNAP25 homologous protein SNAP33-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 491.1 bits (1263), Expect = 1.400e-135 Identity = 246/312 (78.85%), Postives = 280/312 (89.74%), Query Frame = 1
BLAST of Spo05264.1 vs. NCBI nr
Match: gi|255547273|ref|XP_002514694.1| (PREDICTED: SNAP25 homologous protein SNAP33 [Ricinus communis]) HSP 1 Score: 362.8 bits (930), Expect = 5.800e-97 Identity = 195/313 (62.30%), Postives = 236/313 (75.40%), Query Frame = 1
BLAST of Spo05264.1 vs. NCBI nr
Match: gi|698528687|ref|XP_009761175.1| (PREDICTED: SNAP25 homologous protein SNAP33 [Nicotiana sylvestris]) HSP 1 Score: 355.5 bits (911), Expect = 9.300e-95 Identity = 199/312 (63.78%), Postives = 234/312 (75.00%), Query Frame = 1
BLAST of Spo05264.1 vs. NCBI nr
Match: gi|697139316|ref|XP_009623745.1| (PREDICTED: SNAP25 homologous protein SNAP33-like [Nicotiana tomentosiformis]) HSP 1 Score: 355.5 bits (911), Expect = 9.300e-95 Identity = 199/312 (63.78%), Postives = 235/312 (75.32%), Query Frame = 1
BLAST of Spo05264.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVK4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136430 PE=3 SV=1) HSP 1 Score: 618.2 bits (1593), Expect = 5.400e-174 Identity = 312/312 (100.00%), Postives = 312/312 (100.00%), Query Frame = 1
BLAST of Spo05264.1 vs. UniProtKB/TrEMBL
Match: A0A0J8F4J4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g113890 PE=4 SV=1) HSP 1 Score: 491.1 bits (1263), Expect = 9.900e-136 Identity = 246/312 (78.85%), Postives = 280/312 (89.74%), Query Frame = 1
BLAST of Spo05264.1 vs. UniProtKB/TrEMBL
Match: B9RLS5_RICCO (Synaptosomal associated protein, putative OS=Ricinus communis GN=RCOM_1470520 PE=4 SV=1) HSP 1 Score: 362.8 bits (930), Expect = 4.100e-97 Identity = 195/313 (62.30%), Postives = 236/313 (75.40%), Query Frame = 1
BLAST of Spo05264.1 vs. UniProtKB/TrEMBL
Match: A0A151SL17_CAJCA (SNAP25 isogenyous protein SNAP33 OS=Cajanus cajan GN=KK1_001677 PE=4 SV=1) HSP 1 Score: 354.8 bits (909), Expect = 1.100e-94 Identity = 197/312 (63.14%), Postives = 234/312 (75.00%), Query Frame = 1
BLAST of Spo05264.1 vs. UniProtKB/TrEMBL
Match: A0A0B2SW23_GLYSO (SNAP25 like protein SNAP33 OS=Glycine soja GN=glysoja_015872 PE=4 SV=1) HSP 1 Score: 352.1 bits (902), Expect = 7.200e-94 Identity = 198/313 (63.26%), Postives = 236/313 (75.40%), Query Frame = 1
BLAST of Spo05264.1 vs. ExPASy Swiss-Prot
Match: SNP33_ARATH (SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1) HSP 1 Score: 309.3 bits (791), Expect = 4.800e-83 Identity = 175/313 (55.91%), Postives = 221/313 (70.61%), Query Frame = 1
BLAST of Spo05264.1 vs. ExPASy Swiss-Prot
Match: SNP30_ARATH (Putative SNAP25 homologous protein SNAP30 OS=Arabidopsis thaliana GN=SNAP30 PE=3 SV=1) HSP 1 Score: 260.4 bits (664), Expect = 2.500e-68 Identity = 138/220 (62.73%), Postives = 164/220 (74.55%), Query Frame = 1
BLAST of Spo05264.1 vs. ExPASy Swiss-Prot
Match: SNP29_ARATH (SNAP25 homologous protein SNAP29 OS=Arabidopsis thaliana GN=SNAP29 PE=2 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 9.400e-55 Identity = 133/290 (45.86%), Postives = 177/290 (61.03%), Query Frame = 1
BLAST of Spo05264.1 vs. ExPASy Swiss-Prot
Match: SNP25_CHICK (Synaptosomal-associated protein 25 OS=Gallus gallus GN=SNAP25 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.900e-10 Identity = 55/212 (25.94%), Postives = 101/212 (47.64%), Query Frame = 1
BLAST of Spo05264.1 vs. ExPASy Swiss-Prot
Match: SNP25_HUMAN (Synaptosomal-associated protein 25 OS=Homo sapiens GN=SNAP25 PE=1 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 1.900e-10 Identity = 55/212 (25.94%), Postives = 101/212 (47.64%), Query Frame = 1
BLAST of Spo05264.1 vs. TAIR (Arabidopsis)
Match: AT5G61210.1 (soluble N-ethylmaleimide-sensitive factor adaptor protein 33) HSP 1 Score: 309.3 bits (791), Expect = 2.700e-84 Identity = 175/313 (55.91%), Postives = 221/313 (70.61%), Query Frame = 1
BLAST of Spo05264.1 vs. TAIR (Arabidopsis)
Match: AT1G13890.1 (soluble N-ethylmaleimide-sensitive factor adaptor protein 30) HSP 1 Score: 260.4 bits (664), Expect = 1.400e-69 Identity = 138/220 (62.73%), Postives = 164/220 (74.55%), Query Frame = 1
BLAST of Spo05264.1 vs. TAIR (Arabidopsis)
Match: AT5G07880.1 (synaptosomal-associated protein SNAP25-like 29) HSP 1 Score: 215.3 bits (547), Expect = 5.300e-56 Identity = 133/290 (45.86%), Postives = 177/290 (61.03%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05264.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05264.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05264.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo05264.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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