Spo05306 (gene) | SpinachBase

Overview


Name	Spo05306
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	DNA-directed RNA polymerase II subunit
Location	chr6 : 14371804 .. 14379664 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTGGAAACTTCCTACTACGTATAAACACAAGTAGGAGTAAGATTTATGGTAAACATTACAAAAAGGAGTAGTACTTTTCTCTCTCCTCACTTTATGTTCTGAGGCTCTCCCCAAATTCACTGCAGTCCTTAAAAACAACAATATTCCTTTCACCCTCCACTCCTCGACGCCGTAGACCACCTGCCGCCACTCTCCTCCGCCATCTCCGGCAAAGATGTTTTTCCATATTATACTGGAGAGGAACATGCAGCTTCACCCTCGCCATTTTGGCCCACGTCTCCGGGATAAACTCGTTTCTAAGCTCATGAAAGATGTTGAGGGAACCTGCAGGTTTGTTACTAATCAAAACCCTAATTTTTAAATTCAACTTTTTATTTATCCAATTACGCATTATAATTGAAATTAACTCAACTGCGTATTCTTGGGTTGCTCAATTTTTGATTTTTTAGCGGGCGCCATGGATTTGTGGTGGCAATCATGGGAATTGAGCATGTTGGCAAGGGGTTGATTAGAGATGGAACTGGGTTCGTCACTTTCCCTGTCAAGTATAAATGTGTTGTATTTCGGCCTTTTAAAGGCGAGATTCTTGAGGCTGTTGTTACCATGGTTAATAAGGTATTATATCCTTCTAAACCCCTTCGTTAAATTGAACCTCGGTTGATTAGTTTTTAACTTTTTCTTTGTGATTGTTGGAAATTGGCAGATGGGTTTCTTTGCTGAGGCTGGCCCTGTTCAGGTGTTTGTGTCTAATCATGTGAGTCTCCTTTGATTTTGTAGTTTCGGAGTTTATGCTTATGTGTTTGTAATAGCTTCAATTTTTGCATCTGTTTGATCTTAATTTGTGTGTTCAAAGAGATTTTAGATTGGTTTTAGTTACTTATGATTTGAATGCTTCCATCATATTGTAGCTGATACCGGATGATATGGAGTTCCAATCTGCTGATACACCAAATTATACAACTTCAGATAATTCAGTAGGTTCTCTTGAGTCCAAGATGTTCATTTAATTTTCAGTTTCATTGTGCGGAAGTTTGATATTTTTTTTGACAGGTCAAAATTCAAAAAGACAGTGAGGTGCGGCTCAAGATTATCGGGACTAGGGTGGATGCAACAGAAATTGTATGCCTTCCCTTTTTCTTTCATACTAAATTGCATATTCAGTTGTTATTTTGGTTTGCCACTTGCTGATATTTGGATGTATTTTCTCCGATTCATATCTACTGCTTGCACTGGTTTTTTTCTTAGGAAAATTGATTTTATTTATTTATTTATTTATTGATTTACTAGTGAGTTTGTTCTATGCTTGAATGAATTTTGCTTATTAAAAGTAAACTTCAATGGTTAAAAGGTGCTTTTTGCTGGAATTGATCTTCATAATTGGAAGAGAACAAAGGCTCCCTATTTTCTCTTAGCTGTTAATTGGAATTTTGGGGAAGTTGGAGTTGATTGGGGTTCCGGAATTATGGGGAAATGGAGTTGAATGGGCTTCTTAATTTTGGAGTTGAATGGGCTTCTTAATTTTGGAGTTGAATGGGGTTCCGGACTTAGTTTCCACACATCCTAATTGTCTGGAAATTGTGTTCCCTTGTTTATCCAACTCTATGTTTCAGTTTCTAATTTCTGATTCCATACAACATACTAATGTACTACCAAAATTTCACAGGCACCAAAATAAGATAAGTGCATCATGTAAATCAGGATAAAAGAACAACTAGATAGTTAAGGCCTCTATGCAATAAAGGGCTACAATTCTTATATTATGCAATAGACTTTCTTGAAAAGTTAACTCAGCAGCTGAAGTTTTAGATCTTAGTTTTAGAAACATCATAGCATTGATGCCATCAAAAGTGGACATCTGACAAGACGGAAAAGCGGGTAGAATTTGAAGCACAAATAGCTGTCTGTGTATAATATCTCAGATTATGAACTCGGTGAACAACATGTAGAAAACATCAAGCAACTTAAATCTCCCAGTGTGAGGCCACACCCACTGACCCACAGCCTCTTGATAAGCAGATGTCAGATTAGAATTTTCCTCAAAAAGCTTCTCTATCTCTGAAGATTGTGAATCAATCTGCAAAAACATAATCTAACTTGAGCGAAGGGGAAGAAAATAATATTGCATTTAGGAAAAAGAAGAGGATAGGGGTAAAAGAAGGATTATGTTCTATATTAATAAGGCAAGAAAGCTTTCCAGCCAAAAATAACGAGGCAAGAGAGGTTACCTCTAGCAGAATCTTCTGCCTCTCCCTTCTGATCTCTCAAGGTAATGATCCTCGAATTTCTCCTTGTCTTGCTACAAGATTTCGAAAAAGTAACAAACTGTGTAAATTAGTGATCAACATTTCAGCAGCATTTGAAAGAGCATATTCATCTAGAAGGGATTTCACTGAAGCAAAGAAAGAGAAGTCCACAGAGATGTGTTGACTGAACCATTAAACTAGTAGTATGTACATGACTCTTTTGATCCCGTGTATCAATTCCATGTCAAATTATTACACGGTTTAATTCTTTAGTCAAAACTGGAATAAAATTCCAAGACTTGACTAATTTTTCATTTCAAATCCATTTTTAGAGTCTGCTGAAAGATCCTGCCTTAAAGGAATGACTAAGCTTTAACTCAATATGTTAACCTGAAAAGTGAAATATAATGTACAGCAATCACAGATTGCTTTGTACACACAAATACAAGGAAAAATGTGTTGGGAATCAATATGAAGAGGAATCTGGCTGACCAAGGTATATGTCTTCGATGATGTTTTCTCTGCAGCATCTTCTGCAACAAATACAAACAAAAATATTAAGAAAACAAGTTCACTAGATGATGTCAGAAATAATTTAAAAAAGGAATCTGTAGATCCCTAGCTCCCAATTAAAACTTGGATACAAAACCATTGACTGCTCCCATTGAAAGAAAAAAGAAAGGTCCCTGTCAAGCTTTTCCCAAATTACCAACATTCATAAATTGATGGAAACATGGCAACAAGTCATTAAAGGGGCGTTTGGTTCAATTGGGGTAAAGGGAATGAAGTCAACAAAGGGAATGGAAGGGAAAAGAAATAAAAACCCTTTGGTATCTACTGCTTGCACTGGTTTTTCCTTAGGAAAATTGATTTTATTTATTTATTGATTTACTAGTGAGTTAGTTGTATGCTTGAATGAATTTTGCTTATAGAAAGTAAACTTCATGGTTAAAAAGGTGGTTTTTGCTGGAATTGATCTTCATAACTGGAAGAGAACAAAGGCTCCCTATTTTCTCTTGGCTGTTAATTGGAATTTTGGGGCAGTTGGAGTTGGATGGGGTTCCGGAATTATGGGGAAATGGAATTGAATGGGCTTCTTAATTTTGAAGGGATTCAGTAAAGATATTTTAGAGATATCAAGGACAATAATGAGTCTCTTTGTTCATTCAGTGTTGTTGTTTTCTTCATTTTAGAGCTGTAAATATGTTAATTTACATGTTTCAGAGGTTGTTGATTGAACTAGGGGAAATGGGCCCCGAGGAGGTGTGAATATTGGCTCTTAATATGTGATGTTTGAAGTAATTTGGCTCTTAATATGTTAATATGTGATATATGGCTGTATTTTCTCCGATTGGTATCTACTAGTGAGTTTGTTGTATGCTTGAATGAATTTTGCATATTGAAAGTACACTTCATGGTTAAAAAGGTGCTTTTTGCTGGAATGGATTTTCATAATTGGAAGAGAACAAAGGCTCCCTATTTTGTTTGATGTTGATTGATGCTGTTACTGTTAGATTCAATTCTCAGAATTTAAATCTATCTAAAGTTTTGCCCTTTTGATGGAGACAATGGTGTATTTGCAACTTATTAGCTATTACGGATACTTTAATAGAGTAACTTTGCAAGTCCAATTTTGTATTTGTTTATCTTTTTTGTGTTTGTTGATGAGCTTGCTTATTCTGACTATGGTTCTTCTGTGATTATTGAGTGATGATGATTGTGATACTATTATGCCTAAATTGTAGCATTTATGGTTTATGGGTAGCGAATGCGTATATCGTGAAAGTGTGGTACCTATTGTTCAAATATTTGGTAGATTTAGCAAAGAAATGATCGGCATTGAGATGGTCACTTGGGATTTAGCATTTAGAATGAGTTGATTTGGGTCCTGTACTCCTTGTTGCTTCCTGATTGTATGGCTTATCATACCCGTGTTTGTTATTTAGCTTTGAAATTGGCAAACTGAGATAACTGTTGAATAATTTAGTTGCTGCCACTAGTTAGAGAATGATTTGCAATTAAGCATTGCCTTCCCCTAGCCTGAGTATTTCACTTGGGTATCTGATTCTGCAGCTCCATTAGTCTTTGATAAGGGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTTGAGTATATTTGGGGCACAAAGTACTACGCTGTATCTGTTTTCATTGTAGTTTGTTGTTGTGTAGTGATATAAGAATGAAATTGCCTAGGAAAACCGCAGGAGTAGCACATTAATTTTGCAGAAAATGTGAATAAATAACTTTCAGGTTGGAAGAGTTTTGCGCTCCATCGGATTCTGATCATTTATGGATCACCTAATTTTTGTTTTGTGGTGACTTTGATGGTTCCTTCTCTATGGCTGTTAAGCTTACTGTTTAGTAGAAGCAGTGCAGTGACCGTTAACTGGAAATGATTGCGGGAATCATATTCAATTGCATCTATTCATGCTCGTGGATATGTTGTGTTTATGTTCTGTATCCACAAAGATTCTGGTTTCACTAAAATGAATAACAGTAAGTAGTTTGTTGTTTGTTTTGTACCTGGATTTGCTCTCATTTTAAAAGGAAATTTGCCATTATTAGGAAATAACCGGGGAAGAATATCTCTGCAGGAATCACGCCTGTGTCAAAATACCAACAATATATGCTACTAGCATGGTTCATCTCCTTCTGTATGCCTCTAGGAGGGGTTAGGATAAAAGAGAGGACTTGGGGAAAGGGGGGGTTGGATGGCGAATAGAATGGAGACGTGCGCAGCATTATATTCTGATTGATGATAACCTCATTGTGTTTGCTTGCAATAAGTACTACGTATTTAGTCTCCTTATGTTGGGTGGTTTATACAATTGCTTGTGTTGTTGAATCGTGGTTGGTTTCTCGTATACTCATGTCTATCGTATGATTGAGTTGTTGCAATAACTTGAAAAGCTTAAACATTAAATTAACGGGTTTTTCATGAAATGCCCTTCAAGGTTTCATCTAATGACCAAATACCCACTAAAATAGACAAATTATGCCTTATTTTTCTAGAAATTTTTCAAATACCCTAATTTTTAACGGAAAGTTAATGCCGTTAGTTTTAATGGTAAATAAACAGAATTAACCTTTTCAACCTCCAATTAATTTAAACTAATACTTGCGGATACTTCAGGAATGATCAGCTCTATCAGTTTAAGCTTTGTATCGTATGGTGAAATCCTTATTTGTAGTTCTCCTGTTACATGCTCATGCTCCCTCCGTATCTTTTTAAGAGATGAACATTCCTTATTCGGCCGTATTTTTATTAAGAGATACACTTTCTATTTTTGGCATGTCATTGTCCCCACCTCCAATTATACTAATCTTTTTTTCCCTAACTCAATACTCTACTTTCATCTTATTATAATAAATTCAACTCTGCCTTCTAAAACTATGTGCCGGTCAAAGTGTATCTCTTAAAAAGACACGGAGGCATTATTTTGAATCAATATCATCTTTTTGAAGTGTATTGGAAGCATAGTTGTTTATGTTTATTGGGATTGTGGTGTACTCTTTGAGAGAACCGAGTTTCAGTCACCTTTTAAGTCATTGATGTAATTGATTGATTATTAAGATTTGTTGACAACACTCATCACAAATGACATAGAAACTTTCCAATAGCTGAAATTTGAATACAGTGCCACCGAGTGTTTCCACATTTAGAGATTTTCTTCTGAGTTTTCATATGACGTGGAATGTTAAACAGTCATATGACTCATAAAGTGAGTTAGGTTTGAAGTTTGGACTACTTTGATTTAGATTGAAAGAGTGTTGGCTATTGATCTAGAATCACCATCATTCGTGATATTGTCAATTGCATTGAAATGTAGAACTTTCTGGAAGTTGTAGGTAACAATGTGATAGTCATCCAAATGTGTGCTCTAATATAGTAAGTGATATTGTATGATGAGTTTATTTGAGTTCCTTTTTTTTTTTTCCTGGGGTTAACTGATTTTTTTTTTTCTTGCAGTTCTGCATAGGAACGATAANTTTTTTTTTTTTCCTGGGGTTAACTGATTTTTTTTTTTCTTGCAGTTCTGCATAGGAACGATAAAAGACGATTTTCTGGGCGTCATAAGTGACCCCGGTGCAGCTTCATGAGCTCCATTGTACTTGATATAGCTGATAACCCATTTTGTGTAGAAAATTTCTGGAACTAAATCCTCGGAGTTGTATTTTGACTTTTGAATAACCATTTAGTGGTTTGGATATAAATGCTCCTAACTTACCATATTAACACTGTTTGTATGAAACGGGAAAATTTGGTGTTAAAGTTTAATGCCTCGTGTTATTAAAGTTTAGTTAATTGAGAAGTGCATTACAAATCCCTCTATTAAAGTTTAATAAAGCGTGTCTCAAGTGCTCTTGATTAATGTTGTTTTACATAATATCTGTGATATTAAGGATATTTGAGCTTGTTGATCAAACTCAACCCATGGTTTAAGCTTTTGTATATTGTTGATAACTGCAGGTTGCAGGCATGAAAGAATATTTAAACATAATCTTTCAGTTGTGTTATATAATTTATTTTGTGTGTTATAATTTGTTGGATATAGGTCGTTGATTGAGGAGAACCAATTGGCTTGAAACATTTTAGAGCGGGTGACACTGGAAGGTCCCTATATTCATGTTTGGTAGTTTTGCAGATAACTGACTACTGCCTTGTGCCTTGTCAGGGAGCTATTTCTACTTCTGGATAGATAGCCAACAAAGGTCCTGACTCCTGACTCCTGACTCCTCAAGGAAGATGCAGTGAGGTTAATTTCTAGTGTTATCTCTTCCGCAAATTTATATTAGGCCATGACTGATTTTACAGCCAAAGTCACTAAGTCATTTGAAAATGCTGTATATTAATAGACCAAATCCTCCTTGTATTTTCTTAAGTAAAATATCCTGCAAATTTTTGTATATTTAATGTACCATTTGGTTTACTTTCCGACATACTTAAATATGACATTGTTGTCTGACTACTGTTTACAGTTGCTGCTTCCAGAGATCAACGAAAAGAAAAGGCAACACAAGACTCAACAAAATCCTATATTTTTTGCTTAGCCTAATGTGTCGTAATCCAACCTTCCTTTACTTGTATTTTGCTTATTTATTATTTTCTAGGATGTTTCTAATAGTTTTTTAGGCTTTAGATAGAATTATTATGTTGACTTAGTGTTCACTGTTAGTTTGTAGCTAATTTAAAATAAACCTCTATGAGGGTATGAATAAATGAATTCCTACTTCTCACATTTTGTTGCCATCGCTTTATTACTTGTGTTTTGTTGTCGGCCTTTAATAGATATTGTGCCGCCATTCGCTCTAAGCAACCCAAATCCCATAAAATCCCGCAATCAGATAAATTCTCGTCGACGGTCCCGCTTATGTTTGCTGTGTGCAAACAAGCGCCCCGATCGACCCTTGCCTCTCACTCTTGTCGCCAATAGGCAAGAGCGTTCATCCGGAATCAAGTGCTTGCTCGTGCC

mRNA sequence

TATTGGAAACTTCCTACTACGTATAAACACAAGTAGGAGTAAGATTTATGGTAAACATTACAAAAAGGAGTAGTACTTTTCTCTCTCCTCACTTTATGTTCTGAGGCTCTCCCCAAATTCACTGCAGTCCTTAAAAACAACAATATTCCTTTCACCCTCCACTCCTCGACGCCGTAGACCACCTGCCGCCACTCTCCTCCGCCATCTCCGGCAAAGATGTTTTTCCATATTATACTGGAGAGGAACATGCAGCTTCACCCTCGCCATTTTGGCCCACGTCTCCGGGATAAACTCGTTTCTAAGCTCATGAAAGATGTTGAGGGAACCTGCAGCGGGCGCCATGGATTTGTGGTGGCAATCATGGGAATTGAGCATGTTGGCAAGGGGTTGATTAGAGATGGAACTGGGTTCGTCACTTTCCCTGTCAAGTATAAATGTGTTGTATTTCGGCCTTTTAAAGGCGAGATTCTTGAGGCTGTTGTTACCATGGTTAATAAGATGGGTTTCTTTGCTGAGGCTGGCCCTGTTCAGGTGTTTGTGTCTAATCATCTGATACCGGATGATATGGAGTTCCAATCTGCTGATACACCAAATTATACAACTTCAGATAATTCAGTCAAAATTCAAAAAGACAGTGAGGTGCGGCTCAAGATTATCGGGACTAGGGTGGATGCAACAGAAATTTTCTGCATAGGAACGATAAAAGACGATTTTCTGGGCGTCATAAGTGACCCCGGTGCAGCTTCATGAGCTCCATTGTACTTGATATAGCTGATAACCCATTTTGTGTAGAAAATTTCTGGAACTAAATCCTCGGAGTTGTATTTTGACTTTTGAATAACCATTTAGTGGTTTGGATATAAATGCTCCTAACTTACCATATTAACACTGTTTGTATGAAACGGGAAAATTTGGTGTTAAAGTTTAATGCCTCGTGTTATTAAAGTTTAGTTAATTGAGAAGTGCATTACAAATCCCTCTATTAAAGTTTAATAAAGCGTGTCTCAAGTGCTCTTGATTAATGTTGTTTTACATAATATCTGTGATATTAAGGATATTTGAGCTTGTTGATCAAACTCAACCCATGGTTTAAGCTTTTGTATATTGTTGATAACTGCAGGTTGCAGGCATGAAAGAATATTTAAACATAATCTTTCAGTTGTGTTATATAATTTATTTTGTGTGTTATAATTTGTTGGATATAGGTCGTTGATTGAGGAGAACCAATTGGCTTGAAACATTTTAGAGCGGGTGACACTGGAAGGTCCCTATATTCATGTTTGGTAGTTTTGCAGATAACTGACTACTGCCTTGTGCCTTGTCAGGGAGCTATTTCTACTTCTGGATAGATAGCCAACAAAGGTCCTGACTCCTGACTCCTGACTCCTCAAGGAAGATGCAGTGAGTTGCTGCTTCCAGAGATCAACGAAAAGAAAAGGCAACACAAGACTCAACAAAATCCTATATTTTTTGCTTAGCCTAATGTGTCGTAATCCAACCTTCCTTTACTTGTATTTTGCTTATTTATTATTTTCTAGGATGTTTCTAATAGTTTTTTAGGCTTTAGATAGAATTATTATGTTGACTTAGTGTTCACTGTTAGTTTGTAGCTAATTTAAAATAAACCTCTATGAGGGTATGAATAAATGAATTCCTACTTCTCACATTTTGTTGCCATCGCTTTATTACTTGTGTTTTGTTGTCGGCCTTTAATAGATATTGTGCCGCCATTCGCTCTAAGCAACCCAAATCCCATAAAATCCCGCAATCAGATAAATTCTCGTCGACGGTCCCGCTTATGTTTGCTGTGTGCAAACAAGCGCCCCGATCGACCCTTGCCTCTCACTCTTGTCGCCAATAGGCAAGAGCGTTCATCCGGAATCAAGTGCTTGCTCGTGCC

Coding sequence (CDS)

ATGTTTTTCCATATTATACTGGAGAGGAACATGCAGCTTCACCCTCGCCATTTTGGCCCACGTCTCCGGGATAAACTCGTTTCTAAGCTCATGAAAGATGTTGAGGGAACCTGCAGCGGGCGCCATGGATTTGTGGTGGCAATCATGGGAATTGAGCATGTTGGCAAGGGGTTGATTAGAGATGGAACTGGGTTCGTCACTTTCCCTGTCAAGTATAAATGTGTTGTATTTCGGCCTTTTAAAGGCGAGATTCTTGAGGCTGTTGTTACCATGGTTAATAAGATGGGTTTCTTTGCTGAGGCTGGCCCTGTTCAGGTGTTTGTGTCTAATCATCTGATACCGGATGATATGGAGTTCCAATCTGCTGATACACCAAATTATACAACTTCAGATAATTCAGTCAAAATTCAAAAAGACAGTGAGGTGCGGCTCAAGATTATCGGGACTAGGGTGGATGCAACAGAAATTTTCTGCATAGGAACGATAAAAGACGATTTTCTGGGCGTCATAAGTGACCCCGGTGCAGCTTCATGA

Protein sequence

MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIRDGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQSADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05306.1	Spo05306.1	mRNA

Homology

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|902165457|gb|KNA07108.1| (hypothetical protein SOVF_174890 [Spinacia oleracea])

HSP 1 Score: 360.1 bits (923), Expect = 2.100e-96
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR
Sbjct: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 178
           SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS
Sbjct: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 177

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|731348804|ref|XP_010685673.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 351.3 bits (900), Expect = 1.000e-93
Identity = 172/176 (97.73%), Postives = 173/176 (98.30%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHIILERNMQLHPRHFG RLRDKL+SKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR
Sbjct: 1   MFFHIILERNMQLHPRHFGSRLRDKLISKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           SADTPNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPG A
Sbjct: 121 SADTPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGTA 176

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|720082113|ref|XP_010242492.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Nelumbo nucifera])

HSP 1 Score: 339.3 bits (869), Expect = 3.900e-90
Identity = 162/177 (91.53%), Postives = 172/177 (97.18%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLV+KLMKDVEGTCSGRHGFVVAI G++++GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPNLRDKLVAKLMKDVEGTCSGRHGFVVAITGVDNIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 178
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DPGAA+
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDPGAAA 177

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|1002270760|ref|XP_015639700.1| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Oryza sativa Japonica Group])

HSP 1 Score: 338.2 bits (866), Expect = 8.700e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. NCBI nr
Match: gi|1002857365|ref|XP_006654370.2| (PREDICTED: DNA-directed RNA polymerase II subunit RPB7 [Oryza brachyantha])

HSP 1 Score: 337.8 bits (865), Expect = 1.100e-89
Identity = 162/176 (92.05%), Postives = 170/176 (96.59%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E +GKGLIR
Sbjct: 53  MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDIGKGLIR 112

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 113 EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 172

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 173 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 228

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QK90_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_174890 PE=4 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.500e-96
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR
Sbjct: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 178
           SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS
Sbjct: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAS 177

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0D9ZYX2_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0E0DR60_9ORYZ (Uncharacterized protein OS=Oryza meridionalis PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A0A0E0HE65_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Match: A2Y4G7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_19893 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 6.100e-90
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPRHFGP LRDKLVSKL+KDVEGTCSGRHGFVVAI G+E VGKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           +GTG+VTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA
Sbjct: 121 SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 176

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_SOYBN (DNA-directed RNA polymerase II subunit RPB7 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 5.600e-89
Identity = 158/173 (91.33%), Postives = 166/173 (95.95%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPR+FG  LRD LVSKLMKDVEGTCSGRHGFVVA+ GIE++GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRYFGRNLRDNLVSKLMKDVEGTCSGRHGFVVAVTGIENIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQ+FVSNHLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDP 174
           S D PNYTTSD SVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVI+DP
Sbjct: 121 SGDMPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVINDP 173

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: NRPB7_ARATH (DNA-directed RNA polymerase II subunit 7 OS=Arabidopsis thaliana GN=NRPB7 PE=1 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 6.500e-85
Identity = 151/176 (85.80%), Postives = 163/176 (92.61%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPR FG  L++ LVSKLMKDVEGTCSGRHGFVVAI GI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQ+FVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           + D PNYTTSD SVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVI+DP AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_BOVIN (DNA-directed RNA polymerase II subunit RPB7 OS=Bos taurus GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.000e-53
Identity = 93/172 (54.07%), Postives = 131/172 (76.16%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MF+HI LE  + LHPR+FGP L + +  KL  +VEGTC+G++GFV+A+  I+++G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
            G GFV +PVKYK +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIS 172
            +++ P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG++S
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_DANRE (DNA-directed RNA polymerase II subunit RPB7 OS=Danio rerio GN=polr2g PE=2 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.000e-53
Identity = 94/172 (54.65%), Postives = 131/172 (76.16%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MF+HI LE  + LHPR+FGP L + +  KL  +VEGTC+G++GFV+A+  I+++G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
            G GFV +PVKYK +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIS 172
            +++ P Y T D  V IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG++S
Sbjct: 121 PNSNPPCYKTVDEDVVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Match: RPB7_HUMAN (DNA-directed RNA polymerase II subunit RPB7 OS=Homo sapiens GN=POLR2G PE=1 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 5.000e-53
Identity = 93/172 (54.07%), Postives = 131/172 (76.16%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MF+HI LE  + LHPR+FGP L + +  KL  +VEGTC+G++GFV+A+  I+++G G+I+
Sbjct: 1   MFYHISLEHEILLHPRYFGPNLLNTVKQKLFTEVEGTCTGKYGFVIAVTTIDNIGAGVIQ 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
            G GFV +PVKYK +VFRPFKGE+++AVVT VNK+G F E GP+  F+S H IP +MEF 
Sbjct: 61  PGRGFVLYPVKYKAIVFRPFKGEVVDAVVTQVNKVGLFTEIGPMSCFISRHSIPSEMEFD 120

Query: 121 -SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVIS 172
            +++ P Y T D  + IQ+D E+RLKI+GTRVD  +IF IG++ DD+LG++S
Sbjct: 121 PNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDIFAIGSLMDDYLGLVS 172

[Close]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Match: AT5G59180.1 (DNA-directed RNA polymerase II)

HSP 1 Score: 314.7 bits (805), Expect = 3.600e-86
Identity = 151/176 (85.80%), Postives = 163/176 (92.61%), Query Frame = 1

		  
Query: 1   MFFHIILERNMQLHPRHFGPRLRDKLVSKLMKDVEGTCSGRHGFVVAIMGIEHVGKGLIR 60
           MFFHI+LERNMQLHPR FG  L++ LVSKLMKDVEGTCSGRHGFVVAI GI+ +GKGLIR
Sbjct: 1   MFFHIVLERNMQLHPRFFGRNLKENLVSKLMKDVEGTCSGRHGFVVAITGIDTIGKGLIR 60

Query: 61  DGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQVFVSNHLIPDDMEFQ 120
           DGTGFVTFPVKY+CVVFRPFKGEILEAVVT+VNKMGFFAEAGPVQ+FVS HLIPDDMEFQ
Sbjct: 61  DGTGFVTFPVKYQCVVFRPFKGEILEAVVTLVNKMGFFAEAGPVQIFVSKHLIPDDMEFQ 120

Query: 121 SADTPNYTTSDNSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAA 177
           + D PNYTTSD SVKIQK+ EVRLKIIGTRVDAT IFC+GTIKDDFLGVI+DP AA
Sbjct: 121 AGDMPNYTTSDGSVKIQKECEVRLKIIGTRVDATAIFCVGTIKDDFLGVINDPAAA 176

[Close]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Match: AT4G14660.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 73.6 bits (179), Expect = 1.400e-13
Identity = 44/133 (33.08%), Postives = 77/133 (57.89%), Query Frame = 1

		  
Query: 43  GFVVAIMGIEHVGKGLIRDGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+ VA+  ++ +G+G IR+ TG V FPV +  + F+ FKGEI+  VV  V K G F   G
Sbjct: 47  GYYVAVTTLDKIGEGKIREHTGEVLFPVMFSGMTFKIFKGEIIHGVVHKVLKHGVFMRCG 106

Query: 103 PVQ-VFVSNHLIPDDMEFQSADTPNYTTSDNSVKIQKDSEVRLKIIGTR--VDATEIFCI 162
           P++ V++S   +P D ++   + P +     S +IQ ++ VR+ +IG +      E   +
Sbjct: 107 PIENVYLSYTKMP-DYKYIPGENPIFMNEKTS-RIQVETTVRVVVIGIKWMEVEREFQAL 166

Query: 163 GTIKDDFLGVISD 173
            +++ D+LG +S+
Sbjct: 167 ASLEGDYLGPLSE 177

[Close]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Match: AT3G22900.1 (RNA polymerase Rpb7-like, N-terminal domain)

HSP 1 Score: 69.3 bits (168), Expect = 2.700e-12
Identity = 39/128 (30.47%), Postives = 69/128 (53.91%), Query Frame = 1

		  
Query: 43  GFVVAIMGIEHVGKGLIRDGTGFVTFPVKYKCVVFRPFKGEILEAVVTMVNKMGFFAEAG 102
           G+++    +E++G+G I++ TG + FPV +  + F+ FKGEI+  VV  V+K G F ++G
Sbjct: 46  GYLITPTILENIGEGKIKEQTGEIQFPVVFNGICFKMFKGEIVHGVVHKVHKTGVFLKSG 105

Query: 103 PVQVFVSNHLIPDDMEFQSADTPNYTTSDNSVKIQKDSEVRLKIIGT--RVDATEIFCIG 162
           P ++   +H+     EF   + P +     S +IQ  + VR  ++ T  R    +   + 
Sbjct: 106 PYEIIYLSHMKMPGYEFIPGENPFFMNQYMS-RIQIGARVRFVVLDTEWREAEKDFMALA 165

Query: 163 TIKDDFLG 169
           +I  D LG
Sbjct: 166 SIDGDNLG 172

The following BLAST results are available for this feature:

BLAST of Spo05306.1 vs. NCBI nr
BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
BLAST of Spo05306.1 vs. TAIR (Arabidopsis)

BLAST of Spo05306.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902165457\|gb\|KNA07108.1\|	2.1e-96	100.	hypothetical protein SOVF_1748...	[more]
gi\|731348804\|ref\|XP_010685673.1\|	1.0e-93	97.7	PREDICTED: DNA-directed RNA po...	[more]
gi\|720082113\|ref\|XP_010242492.1\|	3.9e-90	91.5	PREDICTED: DNA-directed RNA po...	[more]
gi\|1002270760\|ref\|XP_015639700.1\|	8.7e-90	92.6	PREDICTED: DNA-directed RNA po...	[more]
gi\|1002857365\|ref\|XP_006654370.2\|	1.1e-89	92.0	PREDICTED: DNA-directed RNA po...	[more]

BLAST of Spo05306.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QK90_SPIOL	1.5e-96	100.	Uncharacterized protein OS=Spi...	[more]
A0A0D9ZYX2_9ORYZ	6.1e-90	92.6	Uncharacterized protein OS=Ory...	[more]
A0A0E0DR60_9ORYZ	6.1e-90	92.6	Uncharacterized protein OS=Ory...	[more]
A0A0E0HE65_ORYNI	6.1e-90	92.6	Uncharacterized protein OS=Ory...	[more]
A2Y4G7_ORYSI	6.1e-90	92.6	Putative uncharacterized prote...	[more]

BLAST of Spo05306.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
RPB7_SOYBN	5.6e-89	91.3	DNA-directed RNA polymerase II...	[more]
NRPB7_ARATH	6.5e-85	85.8	DNA-directed RNA polymerase II...	[more]
RPB7_BOVIN	5.0e-53	54.0	DNA-directed RNA polymerase II...	[more]
RPB7_DANRE	5.0e-53	54.6	DNA-directed RNA polymerase II...	[more]
RPB7_HUMAN	5.0e-53	54.0	DNA-directed RNA polymerase II...	[more]

BLAST of Spo05306.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G59180.1	3.6e-86	85.8	DNA-directed RNA polymerase II	[more]
AT4G14660.1	1.4e-13	33.0	RNA polymerase Rpb7-like, N-te...	[more]
AT3G22900.1	2.7e-12	30.4	RNA polymerase Rpb7-like, N-te...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003029	S1 domain	PFAM	PF00575	S1	coord: 78..156 score: 1.2
IPR005576	RNA polymerase Rpb7, N-terminal	GENE3D	3.30.1490.120		coord: 1..82 score: 1.0
IPR005576	RNA polymerase Rpb7, N-terminal	PFAM	PF03876	SHS2_Rpb7-N	coord: 9..77 score: 3.0
IPR005576	RNA polymerase Rpb7, N-terminal	unknown	SSF88798	N-terminal, heterodimerisation domain of RBP7 (RpoE)	coord: 1..78 score: 1.7
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 83..170 score: 2.1
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 79..169 score: 4.29
None	No IPR available	PANTHER	PTHR12709	DNA-DIRECTED RNA POLYMERASE II, III	coord: 2..173 score: 5.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0010014	meristem initiation
biological_process	GO:0007131	reciprocal meiotic recombination
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0010638	positive regulation of organelle organization
biological_process	GO:0048235	pollen sperm cell differentiation
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0006346	methylation-dependent chromatin silencing
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0048574	long-day photoperiodism, flowering
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0019915	lipid storage
biological_process	GO:0016572	histone phosphorylation
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006281	DNA repair
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0031048	chromatin silencing by small RNA
biological_process	GO:0006338	chromatin remodeling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0033044	regulation of chromosome organization
biological_process	GO:0050826	response to freezing
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0009651	response to salt stress
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0043631	RNA polyadenylation
biological_process	GO:0010162	seed dormancy process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0009630	gravitropism
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0010050	vegetative phase change
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009845	seed germination
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006306	DNA methylation
biological_process	GO:0048731	system development
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006810	transport
biological_process	GO:0072593	reactive oxygen species metabolic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
biological_process	GO:0006721	terpenoid metabolic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0006075	(1->3)-beta-D-glucan biosynthetic process
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0006909	phagocytosis
biological_process	GO:0050794	regulation of cellular process
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0050896	response to stimulus
biological_process	GO:0009987	cellular process
biological_process	GO:0010467	gene expression
biological_process	GO:0033036	macromolecule localization
biological_process	GO:0050793	regulation of developmental process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0071702	organic substance transport
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0044434	chloroplast part
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005856	cytoskeleton
cellular_component	GO:0035267	NuA4 histone acetyltransferase complex
cellular_component	GO:0000812	Swr1 complex
cellular_component	GO:0005618	cell wall
cellular_component	GO:0031011	Ino80 complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000148	1,3-beta-D-glucan synthase complex
cellular_component	GO:0005665	DNA-directed RNA polymerase II, core complex
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005768	endosome
cellular_component	GO:0005839	proteasome core complex
cellular_component	GO:0005643	nuclear pore
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0019905	syntaxin binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0008374	O-acyltransferase activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0004652	polynucleotide adenylyltransferase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0051213	dioxygenase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0003843	1,3-beta-D-glucan synthase activity
molecular_function	GO:0008022	protein C-terminus binding
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0005200	structural constituent of cytoskeleton
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004620	phospholipase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11641	0.76	Barchart \| Table
Spo07586	0.75	Barchart \| Table
Spo24018	0.75	Barchart \| Table
Spo22894	0.75	Barchart \| Table
Spo19558	0.74	Barchart \| Table
Spo17386	0.74	Barchart \| Table
Spo24549	0.73	Barchart \| Table
Spo06962	0.73	Barchart \| Table
Spo05955	0.73	Barchart \| Table
Spo05127	0.72	Barchart \| Table
Spo22748	0.72	Barchart \| Table
Spo09162	0.72	Barchart \| Table
Spo22970	0.72	Barchart \| Table
Spo10673	0.72	Barchart \| Table
Spo00397	0.72	Barchart \| Table
Spo13970	0.72	Barchart \| Table
Spo22255	0.71	Barchart \| Table
Spo27004	0.71	Barchart \| Table
Spo05603	0.71	Barchart \| Table
Spo14084	0.71	Barchart \| Table
Spo13031	0.71	Barchart \| Table
Spo11918	0.71	Barchart \| Table
Spo22760	0.71	Barchart \| Table
Spo23346	0.71	Barchart \| Table
Spo06465	0.71	Barchart \| Table
Spo04448	0.70	Barchart \| Table
Spo14942	0.70	Barchart \| Table
Spo01841	0.70	Barchart \| Table
Spo05731	0.70	Barchart \| Table
Spo01840	0.70	Barchart \| Table
Spo08772	0.70	Barchart \| Table
Spo23556	0.70	Barchart \| Table
Spo26833	0.70	Barchart \| Table
Spo16759	0.70	Barchart \| Table
Spo23908	0.70	Barchart \| Table
Spo17391	0.70	Barchart \| Table
Spo12155	0.70	Barchart \| Table
Spo23664	0.70	Barchart \| Table
Spo20957	0.69	Barchart \| Table
Spo18451	0.69	Barchart \| Table
Spo21691	0.69	Barchart \| Table
Spo22256	0.69	Barchart \| Table
Spo24066	0.69	Barchart \| Table
Spo06805	0.69	Barchart \| Table
Spo02345	0.69	Barchart \| Table
Spo02731	0.69	Barchart \| Table
Spo26768	0.69	Barchart \| Table
Spo03002	0.69	Barchart \| Table
Spo01914	0.69	Barchart \| Table
Spo10427	0.69	Barchart \| Table
Spo03197	0.69	Barchart \| Table
Spo11623	0.69	Barchart \| Table
Spo12128	0.69	Barchart \| Table
Spo24594	0.69	Barchart \| Table
Spo11384	0.68	Barchart \| Table
Spo09674	0.68	Barchart \| Table
Spo22956	0.68	Barchart \| Table
Spo17340	0.68	Barchart \| Table
Spo10222	0.68	Barchart \| Table
Spo18542	0.68	Barchart \| Table
Spo26560	0.68	Barchart \| Table
Spo11296	0.68	Barchart \| Table
Spo17724	0.68	Barchart \| Table
Spo06030	0.68	Barchart \| Table
Spo17755	0.68	Barchart \| Table
Spo04012	0.68	Barchart \| Table
Spo12364	0.68	Barchart \| Table
Spo01998	0.68	Barchart \| Table
Spo12894	0.68	Barchart \| Table
Spo02115	0.68	Barchart \| Table
Spo02013	0.68	Barchart \| Table
Spo24092	0.68	Barchart \| Table
Spo04591	0.68	Barchart \| Table
Spo04985	0.68	Barchart \| Table
Spo20242	0.68	Barchart \| Table
Spo15426	0.68	Barchart \| Table
Spo15865	0.68	Barchart \| Table
Spo25417	0.68	Barchart \| Table
Spo17778	0.68	Barchart \| Table
Spo24566	0.68	Barchart \| Table
Spo26806	0.68	Barchart \| Table
Spo08528	0.68	Barchart \| Table
Spo17329	0.68	Barchart \| Table
Spo05557	0.67	Barchart \| Table
Spo20826	0.67	Barchart \| Table
Spo27102	0.67	Barchart \| Table
Spo23071	0.67	Barchart \| Table
Spo08999	0.67	Barchart \| Table
Spo09764	0.67	Barchart \| Table
Spo20497	0.67	Barchart \| Table
Spo17032	0.67	Barchart \| Table
Spo17371	0.67	Barchart \| Table
Spo06199	0.67	Barchart \| Table
Spo19635	0.67	Barchart \| Table
Spo15420	0.67	Barchart \| Table
Spo22955	0.67	Barchart \| Table
Spo18269	0.67	Barchart \| Table
Spo02107	0.67	Barchart \| Table
Spo11353	0.67	Barchart \| Table
Spo02818	0.67	Barchart \| Table
Spo08540	0.67	Barchart \| Table
Spo17021	0.67	Barchart \| Table
Spo22673	0.67	Barchart \| Table
Spo12107	0.67	Barchart \| Table
Spo25851	0.67	Barchart \| Table
Spo21729	0.67	Barchart \| Table
Spo12176	0.67	Barchart \| Table
Spo03662	0.67	Barchart \| Table
Spo05514	0.67	Barchart \| Table
Spo16297	0.67	Barchart \| Table
Spo16374	0.67	Barchart \| Table
Spo23751	0.67	Barchart \| Table
Spo18575	0.67	Barchart \| Table
Spo17959	0.67	Barchart \| Table
Spo14695	0.66	Barchart \| Table
Spo00694	0.66	Barchart \| Table
Spo02085	0.66	Barchart \| Table
Spo02847	0.66	Barchart \| Table
Spo02962	0.66	Barchart \| Table
Spo03185	0.66	Barchart \| Table
Spo04041	0.66	Barchart \| Table
Spo04179	0.66	Barchart \| Table
Spo04885	0.66	Barchart \| Table
Spo05405	0.66	Barchart \| Table
Spo05990	0.66	Barchart \| Table
Spo08546	0.66	Barchart \| Table
Spo08850	0.66	Barchart \| Table
Spo09120	0.66	Barchart \| Table
Spo09219	0.66	Barchart \| Table
Spo09350	0.66	Barchart \| Table
Spo09772	0.66	Barchart \| Table
Spo09940	0.66	Barchart \| Table
Spo09993	0.66	Barchart \| Table
Spo11027	0.66	Barchart \| Table
Spo12201	0.66	Barchart \| Table
Spo12221	0.66	Barchart \| Table
Spo12663	0.66	Barchart \| Table
Spo14008	0.66	Barchart \| Table
Spo14204	0.66	Barchart \| Table
Spo00169	0.66	Barchart \| Table
Spo14827	0.66	Barchart \| Table
Spo14849	0.66	Barchart \| Table
Spo14980	0.66	Barchart \| Table
Spo15424	0.66	Barchart \| Table
Spo16161	0.66	Barchart \| Table
Spo16881	0.66	Barchart \| Table
Spo19048	0.66	Barchart \| Table
Spo20187	0.66	Barchart \| Table
Spo21431	0.66	Barchart \| Table
Spo21465	0.66	Barchart \| Table
Spo22747	0.66	Barchart \| Table
Spo23588	0.66	Barchart \| Table
Spo23614	0.66	Barchart \| Table
Spo24287	0.66	Barchart \| Table
Spo24369	0.66	Barchart \| Table
Spo24626	0.66	Barchart \| Table
Spo24890	0.66	Barchart \| Table
Spo26394	0.66	Barchart \| Table
Spo16986	0.65	Barchart \| Table
Spo16911	0.65	Barchart \| Table
Spo07184	0.65	Barchart \| Table
Spo24781	0.65	Barchart \| Table
Spo06681	0.65	Barchart \| Table
Spo16421	0.65	Barchart \| Table
Spo25743	0.65	Barchart \| Table
Spo16088	0.65	Barchart \| Table
Spo02672	0.65	Barchart \| Table
Spo10658	0.65	Barchart \| Table
Spo23610	0.65	Barchart \| Table
Spo20686	0.65	Barchart \| Table
Spo09214	0.65	Barchart \| Table
Spo08120	0.65	Barchart \| Table
Spo18344	0.65	Barchart \| Table