Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAGAGGAGAGGCGAATCATGTAGTGACATTTGTCATCACCACATTGATTTCCTCTCTTTTAGTATAGTATATAGATAGATAGATTGGATCATGAGTTAAAAAATTAAAAAAAAAAGGGCCCAACCGGGTTCGNTGGATCATGAGTTAAAAAATTAAAAAAAAAAGGGCCCAACCGGGTTCGAACCGGTGACCTCTTGATCTGCAGTCAAATGCTCTACCACTGAGCTATGGACCCCTTGATTATTATTTATTAATATAATAGTATTATTTCTCTACTAAATAATTTCACAATTTCTGAAATACAATCTCTTTGATAGTTATATTACTTTGATTTATAACACAAAATTAATTACATCTTTTACAGCATTGTGAGATATTTTTCACATTTTGATGTTCTTTTAATATGCAGAAAACAAATCCAGTGGTCGCGGAGATTTTCTCCCTTATGTCTAGAGATGAAGCCAGGCATGCTGGGTATGTTTTGGCAACTCTTTTCCTGTCCCTAAAACTTCTTTTATTTTGCAAACGAACTGATAATTACCTTGTGCAGGTTTCTGAACAAAGGGTTGTCAGATTTCAATCTGGCCTTGGACTTGGGTTTCCTGACAAAGGCTAGGAAATACACATTCTTCAAGCCAAAGTTCATCTTTTACGCGACATACTTATCAGAGAAGATCGGTTACTGGAGGTACATTACTATTTACAGGCACCTCAAGGAAAACCCTGAGTACCAGTGTTATCCCATCTTCAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGACACGGAGATTTCTTCTCCGCTCTCATGAAGGCACAGCCCCAGTTCCTTAACGACTGGAAGGCCAAACTCTGGTCCCGCTTCTTCTGCCTCTCGGTAATCATCCAATTCACAAGTCATCCTATTCACTACATCTGTTTTTATGCCGTATTGTGATGATACCATTGAAATTTTACTTGTTATATATGATGTTTGTGTCAGGTTTATGTGACCATGTACCTCAACGATTGTCAAAGGACAGATTTCTATGAAGGAATTGGTCTCAACACCAAAGAATTCGATATGCATGTCATCATTGAGGTGAGAGACTATGTCATTATTGAGTAAAATTGTATGAAACTATGAGAGTGTGTTCTTGTATAGATTAAAAGTTAGATTTCTCATTTCTGACAATTTGGTTATTGGCAGACCAACCGCACAACTGCTAGAATATTCCCAGCTGTGTTGGATGTGGAGAACCCAGAGTTCAAGAGGAAGCTTGACCGAATGGTGGAGATTAACAAGAAGCTGATCGCTGTAGGGGAGACTGACGACATTGGTTTTGTGAAGAACTTTAAGAGGATCCCGTTGGTAGCAGCATTAGTTTCAGAGATCTTGGCTGCATATCTGATGCCACCTATTGAATCTGGCTCTGTCGATTTTGCAGAATTTGAGCCACAGCTTGTATATTAGTTTTCCTCTCTATTACTGCATTTTATTGTAAACTTATAAATTGAGGATTACTTGAATTGTTATTGCCTGAGAACACAGAATCTGTAACCGTATGTAAACTTTATAAATTGCAGATTTTGACAATTTAGCAATATCCCTCATCAAATGTATGTCACCTCTCAGCAATATGACAAGTTACCCGAAACTAGCAAGTTATATCCAAATGTATAAATCTAGACACAGGAAGATTCACCAACTAATTGGCGTTAGCAACCGGTTTTTGGTGTTAGCAACCGGTTCACCCTTAGGACTAAACCGGATTCGGAGCGAGTTCTGAGTGGATATGTTTATTCCCTTCCCAATTGTTGTTGCGAGGATTCGAACACGAGTCCCTCCCTACCAAGTTCAGCCC TAGAGGAGAGGCGAATCATGTAGTGACATTTGTCATCACCACATTGATTTCCTCTCTTTTAGTATAGTATATAGATAGATAGATTGGATCATGAGTTAAAAAATTAAAAAAAAAAGGGCCCAACCGGGTTCGNTGGATCATGAGTTAAAAAATTAAAAAAAAAAGGGCCCAACCGGGTTCGAACCGGTGACCTCTTGATCTGCAGTCAAATGCTCTACCACTGAGCTATGGACCCCTTGATTATTATTTATTAATATAATAGTATTATTTCTCTACTAAATAATTTCACAATTTCTGAAATACAATCTCTTTGATAGTTATATTACTTTGATTTATAACACAAAATTAATTACATCTTTTACAGCATTGTGAGATATTTTTCACATTTTGATGTTCTTTTAATATGCAGAAAACAAATCCAGTGGTCGCGGAGATTTTCTCCCTTATGTCTAGAGATGAAGCCAGGCATGCTGGGTTTCTGAACAAAGGGTTGTCAGATTTCAATCTGGCCTTGGACTTGGGTTTCCTGACAAAGGCTAGGAAATACACATTCTTCAAGCCAAAGTTCATCTTTTACGCGACATACTTATCAGAGAAGATCGGTTACTGGAGGTACATTACTATTTACAGGCACCTCAAGGAAAACCCTGAGTACCAGTGTTATCCCATCTTCAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGACACGGAGATTTCTTCTCCGCTCTCATGAAGGCACAGCCCCAGTTCCTTAACGACTGGAAGGCCAAACTCTGGTCCCGCTTCTTCTGCCTCTCGGTTTATGTGACCATGTACCTCAACGATTGTCAAAGGACAGATTTCTATGAAGGAATTGGTCTCAACACCAAAGAATTCGATATGCATGTCATCATTGAGACCAACCGCACAACTGCTAGAATATTCCCAGCTGTGTTGGATGTGGAGAACCCAGAGTTCAAGAGGAAGCTTGACCGAATGGTGGAGATTAACAAGAAGCTGATCGCTGTAGGGGAGACTGACGACATTGGTTTTGTGAAGAACTTTAAGAGGATCCCGTTGGTAGCAGCATTAGTTTCAGAGATCTTGGCTGCATATCTGATGCCACCTATTGAATCTGGCTCTGTCGATTTTGCAGAATTTGAGCCACAGCTTGTATATTAGTTTTCCTCTCTATTACTGCATTTTATTGTAAACTTATAAATTGAGGATTACTTGAATTGTTATTGCCTGAGAACACAGAATCTGTAACCGTATGTAAACTTTATAAATTGCAGATTTTGACAATTTAGCAATATCCCTCATCAAATGTATGTCACCTCTCAGCAATATGACAAGTTACCCGAAACTAGCAAGTTATATCCAAATGTATAAATCTAGACACAGGAAGATTCACCAACTAATTGGCGTTAGCAACCGGTTTTTGGTGTTAGCAACCGGTTCACCCTTAGGACTAAACCGGATTCGGAGCGAGTTCTGAGTGGATATGTTTATTCCCTTCCCAATTGTTGTTGCGAGGATTCGAACACGAGTCCCTCCCTACCAAGTTCAGCCC ATGCAGAAAACAAATCCAGTGGTCGCGGAGATTTTCTCCCTTATGTCTAGAGATGAAGCCAGGCATGCTGGGTTTCTGAACAAAGGGTTGTCAGATTTCAATCTGGCCTTGGACTTGGGTTTCCTGACAAAGGCTAGGAAATACACATTCTTCAAGCCAAAGTTCATCTTTTACGCGACATACTTATCAGAGAAGATCGGTTACTGGAGGTACATTACTATTTACAGGCACCTCAAGGAAAACCCTGAGTACCAGTGTTATCCCATCTTCAAGTACTTTGAGAACTGGTGCCAAGATGAGAACAGACACGGAGATTTCTTCTCCGCTCTCATGAAGGCACAGCCCCAGTTCCTTAACGACTGGAAGGCCAAACTCTGGTCCCGCTTCTTCTGCCTCTCGGTTTATGTGACCATGTACCTCAACGATTGTCAAAGGACAGATTTCTATGAAGGAATTGGTCTCAACACCAAAGAATTCGATATGCATGTCATCATTGAGACCAACCGCACAACTGCTAGAATATTCCCAGCTGTGTTGGATGTGGAGAACCCAGAGTTCAAGAGGAAGCTTGACCGAATGGTGGAGATTAACAAGAAGCTGATCGCTGTAGGGGAGACTGACGACATTGGTTTTGTGAAGAACTTTAAGAGGATCCCGTTGGTAGCAGCATTAGTTTCAGAGATCTTGGCTGCATATCTGATGCCACCTATTGAATCTGGCTCTGTCGATTTTGCAGAATTTGAGCCACAGCTTGTATATTAG MQKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKENPEYQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQRTDFYEGIGLNTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINKKLIAVGETDDIGFVKNFKRIPLVAALVSEILAAYLMPPIESGSVDFAEFEPQLVY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05339.1 vs. NCBI nr
Match: gi|902149392|gb|KNA05315.1| (hypothetical protein SOVF_191490 [Spinacia oleracea]) HSP 1 Score: 520.4 bits (1339), Expect = 1.800e-144 Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 1
BLAST of Spo05339.1 vs. NCBI nr
Match: gi|731324876|ref|XP_010673208.1| (PREDICTED: magnesium-protoporphyrin IX monomethyl ester [oxidative]) HSP 1 Score: 504.2 bits (1297), Expect = 1.300e-139 Identity = 242/253 (95.65%), Postives = 249/253 (98.42%), Query Frame = 1
BLAST of Spo05339.1 vs. NCBI nr
Match: gi|1012352865|gb|KYP64053.1| (hypothetical protein KK1_018640 [Cajanus cajan]) HSP 1 Score: 504.2 bits (1297), Expect = 1.300e-139 Identity = 243/253 (96.05%), Postives = 248/253 (98.02%), Query Frame = 1
BLAST of Spo05339.1 vs. NCBI nr
Match: gi|224089875|ref|XP_002308846.1| (DICARBOXYLATE DIIRON 1 family protein [Populus trichocarpa]) HSP 1 Score: 501.9 bits (1291), Expect = 6.500e-139 Identity = 241/253 (95.26%), Postives = 249/253 (98.42%), Query Frame = 1
BLAST of Spo05339.1 vs. NCBI nr
Match: gi|118489317|gb|ABK96463.1| (unknown [Populus trichocarpa x Populus deltoides]) HSP 1 Score: 501.5 bits (1290), Expect = 8.500e-139 Identity = 241/253 (95.26%), Postives = 249/253 (98.42%), Query Frame = 1
BLAST of Spo05339.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDI4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_191490 PE=3 SV=1) HSP 1 Score: 520.4 bits (1339), Expect = 1.200e-144 Identity = 251/253 (99.21%), Postives = 253/253 (100.00%), Query Frame = 1
BLAST of Spo05339.1 vs. UniProtKB/TrEMBL
Match: A0A151TAJ7_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_018640 PE=3 SV=1) HSP 1 Score: 504.2 bits (1297), Expect = 9.200e-140 Identity = 243/253 (96.05%), Postives = 248/253 (98.02%), Query Frame = 1
BLAST of Spo05339.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CSE5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g064120 PE=3 SV=1) HSP 1 Score: 504.2 bits (1297), Expect = 9.200e-140 Identity = 242/253 (95.65%), Postives = 249/253 (98.42%), Query Frame = 1
BLAST of Spo05339.1 vs. UniProtKB/TrEMBL
Match: B9HDR7_POPTR (DICARBOXYLATE DIIRON 1 family protein OS=Populus trichocarpa GN=POPTR_0006s02810g PE=3 SV=1) HSP 1 Score: 501.9 bits (1291), Expect = 4.500e-139 Identity = 241/253 (95.26%), Postives = 249/253 (98.42%), Query Frame = 1
BLAST of Spo05339.1 vs. UniProtKB/TrEMBL
Match: V7CX10_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G108700g PE=3 SV=1) HSP 1 Score: 501.5 bits (1290), Expect = 5.900e-139 Identity = 239/253 (94.47%), Postives = 248/253 (98.02%), Query Frame = 1
BLAST of Spo05339.1 vs. ExPASy Swiss-Prot
Match: CRD1_GOSHI (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Gossypium hirsutum GN=CRD1 PE=2 SV=2) HSP 1 Score: 493.8 bits (1270), Expect = 1.100e-138 Identity = 235/253 (92.89%), Postives = 246/253 (97.23%), Query Frame = 1
BLAST of Spo05339.1 vs. ExPASy Swiss-Prot
Match: CRD1_EUPES (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Euphorbia esula GN=CRD1 PE=3 SV=1) HSP 1 Score: 491.5 bits (1264), Expect = 5.500e-138 Identity = 236/253 (93.28%), Postives = 245/253 (96.84%), Query Frame = 1
BLAST of Spo05339.1 vs. ExPASy Swiss-Prot
Match: CRD1_ARATH (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Arabidopsis thaliana GN=CRD1 PE=1 SV=2) HSP 1 Score: 488.8 bits (1257), Expect = 3.600e-137 Identity = 232/253 (91.70%), Postives = 243/253 (96.05%), Query Frame = 1
BLAST of Spo05339.1 vs. ExPASy Swiss-Prot
Match: CRD1_HORVU (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplastic OS=Hordeum vulgare GN=CRD1 PE=1 SV=1) HSP 1 Score: 478.8 bits (1231), Expect = 3.700e-134 Identity = 226/253 (89.33%), Postives = 243/253 (96.05%), Query Frame = 1
BLAST of Spo05339.1 vs. ExPASy Swiss-Prot
Match: CTH1_CHLRE (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase 2, chloroplastic OS=Chlamydomonas reinhardtii GN=CTH1 PE=2 SV=1) HSP 1 Score: 364.0 bits (933), Expect = 1.300e-99 Identity = 168/253 (66.40%), Postives = 207/253 (81.82%), Query Frame = 1
BLAST of Spo05339.1 vs. TAIR (Arabidopsis)
Match: AT3G56940.1 (dicarboxylate diiron protein, putative (Crd1)) HSP 1 Score: 488.8 bits (1257), Expect = 2.000e-138 Identity = 232/253 (91.70%), Postives = 243/253 (96.05%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05339.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05339.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05339.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo05339.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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