Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCTATATTGCGGAGAAGATAAATTTTACTCTCTCAGTTGTAGGTAGGTTGATAATTTCGTTCCTTGTCTATTTTTTCACTTGGTTTCTTCCCTCTCTAAATTATTCTTCCTCCCTCTTTTTTAGTGATAACCAATTACAAAGGGTTACCCATTTAACCTGTCAAAATGCAGTAGGCCTGGACTCCAAAGATACTTTTATATATTTTAAATGAATTACTTTCTATCTGAATGATTTTGAACTAGAGATACTCAATGATATTTGTGTTTCATATTATCTATCAGGATTGAAAATTTGGGGGGTTTTATTAAGATTAAAACTGGGTATAATTTCATAATGGCCTTGCCTTAGATACTCAATTTATATGGAGAACAATTGAGATAGTTATCTATGAGTGCTGCTACAACGTTAGATATTTTTTGTTTGCTGGAGTGCTAGATATTCTTGATTGTTAGATTGAACTTGCTTGCTGGCTGTTAATGTACATTTTGAGCTTTTTTTCGCCTCCCTCCTGAATATGCGAGCAATTCTGATTTTGATGATATTGAACTGGGTGGTGGTCAGTTTCGGCTGGAAAGTGGAAACAGACATGGAGACTTATCTGCTCAGGCAACATTTCTTCCGTAATCTCCATGATCGGCTCAGTGCAAGGCCTTTTCTCAGCCTAATTGAGAAGAAGTGGCTTGCTTTTCAGGTAATCTGTAATTTTTTTTTTCTGTAATTAACTAGCATATTGTCTCAATCTACTCTTGCGTGATTGCTGGTATGGTTTGTTTCTTGTAGATTAGTTCCCATGATTTAAAATAAGGTTTTGGAACCCAAGTGTGTATTAGAGCAGAACCTCGAGCTTTCTTTCTCTCTTCCCATTCTGCTGGGTGGCCACTCCGTAATCCACATTTCACAGAGGTGTATATCTGATCGCTCTCCAATCTTATTTTTTTTTCCACAATTCATGATAATTTAACACATTATATGATTTCCCTCAAAAAACGCATTCTAGGGTTTAGTTTCCATCTGTTTATGTTGATTTTGATCTAATTTTTTTGGGGTTTTATACATTTGAGATTATCCTACATTTGATCGATTAATTATAATTATTGTTAAAATATTAGGTGTTTGTTGAGGAAGAATGTAGTGTTTATGTTAATTGGAGTGAACCAAGAACCTTGTTTTGTTGTTCTTGATTGAATTGGATTTGGTTTTGAATGCCCAAAAATTTTTATGGCGTTGTAAAATAGAGGGTTTCTTTTTTCGTTTCACATATTTTCACTTCAATTCTTAGGAATCGAGGCATTATGGGGAAAGAAATTCACCATTGAGTAATAAAGAGACCCGTAACCTGATGAAAATAGCAAACTGAGCTGTGAGCCTACTTACTTTCTGAGTTCCAATATTCATAGGTTTCCATGGTTGGGATCAAGGCAGAGTAGATGTTAGGTACAAAATATGTTGTTAATTTGGGTTTTGGGATTTTGAAGTCAACATGCTCAGTTCAAGTGTTTTTTTTAGGAGTATGCTTTTGATGTCGTACATAATATTTGCACTCATTTAAAATCTTTTGCCACGATATATCTGGCGGTAATCCCTGGTGGTCAAGAGTTGGATTCTTAGGACCGACACGTGTACTATTCCTCTATTAATCAAGAGCATTCAGTTTGTTATAACCTCAGTTGTTTGTCCAATTCAGGTGTAGGTTCTGTTATCTTGTTTTGCAAATGTTAGTCAAAAAAGGGATAAACTTTTAATTAATATTATCTCCGTGCTAGAGTTTGAGAAACTGATGATTTTTGTTTTATGTCTTCCGCCTTTGTAATTCTTTAGTCAAGTAAAAGCTGCATAACAAACTTTCTTTTTGCGGATCCTGATTGCATCATTTTTGGCCTGCTCCCACTTTTAGAATGTGGGTTTTGTAAATCTTTGATGAGTCTGAATGGACGCCTCACAGAGAACAATGGACATCAGATAAACTACCACCGATGATCCGAAACTTTTTTGAGCTACGGCTGGTAAACACATCATTTTAAAGAGTGCAGACATGACTGATAACATGCAAAAAGAAGCTATCGACATTGCCATCGTTGTACTTTCTCCCTCCTATTTTTGAAAATTGCATTTTTTGTACTTATACTTCCAATCTTTGCACTATGATATGGATTTGAAAAAGTAGAATTTGAAGAAGAAAGTTGTTTGAAAAACCATACAAAAAATCAATTTAGTACATCCCTAGCTAGAATTTTAAAAAACGGAGATGGGACTGAAACAAGAGAGTAAATGAGCGGCATTACTTGACGCTAATTGTTTTATTATTAATTTTCGCTACACCAGAAGATTAGTATACTCTCCACCCGGAAATCCTAAGGCTTTTAGGTTATATTACAAGCTAGAGATTGTGAAATTCAGAAAACCATAAAAGATGAGTGGGAGAAGGGAAGAGAGGGGAATAAAAAAAGGAAAAGACTTTCTAGGAGATGAGTGAGAAGGGGAGAAGAACAAATAGCGAGAATGGATTCTGGCAAAGTTGTTTTTTTTAGCTTTCCGGGTAATTTTTAATCACTATAAGGTCTATAACATTTTCAAATTCCGCTGACAACAATTATTTCATGCTATCCAGCAACTTTATTGGATCACTCATTGCGTCATTGGTGTCCATAACATGCTGCAGTTTAATACTTGTATTAGGGACTGGCCTTGTGGAATCTATTTGACTAAGTCTATTGCCAAGTTTCTACCTACTTAGTTTTTATAAACTTATGTCCATGAGTAAGAGTTCAACACTAATTACTCCTTTTGCTTTGTCTTTCCAGTTAAGTGGCAAGAAGGTCGGAATTATTGGTTTGGGCTGGATTGGGATTGGTGTTGCAATTGCTGAGAGAGCTGAAGCATTTGACTGTCATATTTCTACTACTCCAGAACTAAAAAGGCATATTATTATTAAGCATTTGTTGCATGTAGATTATTATTAAGCATTTGTTGCATGTTTTGTCCAGTGTTGAACCTGAATAGGCAAACATTTGGTAATATTGCGTAGACTAGAATCTTATGTAATATAATGATGACTAATGTATTAGGGGCTTTTTAAAGCAACACGATAATCTACGATCCTTCATGTTTTTAGCAAAGATCTTTAGCACCTTTCCAAGACTTTACTTTACATTGTCATTTGCAATTATTCCTATTACGACGTTTTTTCATCCATTACATATTCATTGGAAC ATGGATCTATATTGCGGAGAAGATAAATTTTACTCTCTCAGTTGTAGTTTCGGCTGGAAAGTGGAAACAGACATGGAGACTTATCTGCTCAGGCAACATTTCTTCCGTAATCTCCATGATCGGCTCAGTGCAAGGCCTTTTCTCAGCCTAATTGAGAAGAAGTGGCTTGCTTTTCAGATTAGTTCCCATGATTTAAAATAAGGTTTTGGAACCCAAGTGTGTATTAGAGCAGAACCTCGAGCTTTCTTTCTCTCTTCCCATTCTGCTGGGTGGCCACTCCGTAATCCACATTTCACAGAGTTAAGTGGCAAGAAGGTCGGAATTATTGGTTTGGGCTGGATTGGGATTGGTGTTGCAATTGCTGAGAGAGCTGAAGCATTTGACTGTCATATTTCTACTACTCCAGAACTAAAAAGGCATATTATTATTAAGCATTTGTTGCATGTAGATTATTATTAAGCATTTGTTGCATGTTTTGTCCAGTGTTGAACCTGAATAGGCAAACATTTGGTAATATTGCGTAGACTAGAATCTTATGTAATATAATGATGACTAATGTATTAGGGGCTTTTTAAAGCAACACGATAATCTACGATCCTTCATGTTTTTAGCAAAGATCTTTAGCACCTTTCCAAGACTTTACTTTACATTGTCATTTGCAATTATTCCTATTACGACGTTTTTTCATCCATTACATATTCATTGGAAC ATGGATCTATATTGCGGAGAAGATAAATTTTACTCTCTCAGTTGTAGTTTCGGCTGGAAAGTGGAAACAGACATGGAGACTTATCTGCTCAGGCAACATTTCTTCCGTAATCTCCATGATCGGCTCAGTGCAAGGCCTTTTCTCAGCCTAATTGAGAAGAAGTGGCTTGCTTTTCAGATTAGTTCCCATGATTTAAAATAA MDLYCGEDKFYSLSCSFGWKVETDMETYLLRQHFFRNLHDRLSARPFLSLIEKKWLAFQISSHDLK Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05432.1 vs. NCBI nr
Match: gi|902179498|gb|KNA09371.1| (hypothetical protein SOVF_154190 isoform B [Spinacia oleracea]) HSP 1 Score: 144.4 bits (363), Expect = 6.900e-32 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1
BLAST of Spo05432.1 vs. NCBI nr
Match: gi|902179497|gb|KNA09370.1| (hypothetical protein SOVF_154190 isoform A [Spinacia oleracea]) HSP 1 Score: 132.9 bits (333), Expect = 2.100e-28 Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
BLAST of Spo05432.1 vs. NCBI nr
Match: gi|902228705|gb|KNA21225.1| (hypothetical protein SOVF_044880 [Spinacia oleracea]) HSP 1 Score: 77.8 bits (190), Expect = 7.900e-12 Identity = 41/66 (62.12%), Postives = 44/66 (66.67%), Query Frame = 1
BLAST of Spo05432.1 vs. NCBI nr
Match: gi|976915226|gb|KVI01191.1| (Armadillo-like helical [Cynara cardunculus var. scolymus]) HSP 1 Score: 74.7 bits (182), Expect = 6.700e-11 Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1
BLAST of Spo05432.1 vs. NCBI nr
Match: gi|731354000|ref|XP_010688347.1| (PREDICTED: probable serine/threonine-protein kinase vps15 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 74.7 bits (182), Expect = 6.700e-11 Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 1
BLAST of Spo05432.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QS60_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_154190 PE=4 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 4.800e-32 Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1
BLAST of Spo05432.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQ22_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_154190 PE=4 SV=1) HSP 1 Score: 132.9 bits (333), Expect = 1.400e-28 Identity = 60/61 (98.36%), Postives = 61/61 (100.00%), Query Frame = 1
BLAST of Spo05432.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RNX7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_044880 PE=4 SV=1) HSP 1 Score: 77.8 bits (190), Expect = 5.500e-12 Identity = 41/66 (62.12%), Postives = 44/66 (66.67%), Query Frame = 1
BLAST of Spo05432.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BP99_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g197640 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 4.700e-11 Identity = 37/62 (59.68%), Postives = 42/62 (67.74%), Query Frame = 1
BLAST of Spo05432.1 vs. UniProtKB/TrEMBL
Match: A0A103Y2A4_CYNCS (Armadillo-like helical OS=Cynara cardunculus var. scolymus GN=Ccrd_020510 PE=4 SV=1) HSP 1 Score: 74.7 bits (182), Expect = 4.700e-11 Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1
BLAST of Spo05432.1 vs. ExPASy Swiss-Prot
Match: VPS15_DICDI (Probable serine/threonine-protein kinase vps15 OS=Dictyostelium discoideum GN=vps15 PE=3 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 8.200e-9 Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1
BLAST of Spo05432.1 vs. TAIR (Arabidopsis)
Match: AT4G29380.1 (protein kinase family protein / WD-40 repeat family protein) HSP 1 Score: 69.7 bits (169), Expect = 7.600e-13 Identity = 34/58 (58.62%), Postives = 40/58 (68.97%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05432.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05432.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05432.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo05432.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|