Spo05445 (gene)

Overview
NameSpo05445
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionHistone H2A
LocationSuper_scaffold_126 : 1476486 .. 1477685 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTGTGTTTTCTGTTCAAGATGATGAACTGATGATGAAATTGCATAATGCAGAATGAGATCGCGTTATTAAGTAAAATTCGGTAGCAGAATATTATAACTCTTCAAGGCTGTTGCATTCATGGTGATTCTCGATTTCTTGTGTATGAACTTATGGAAAATGGATGCCTGGAAACTCAGTTGCACGGTAATATTTCAAACATTCTTATATGTTAAGTTACTCGGACTTGGGTACTCATGTTAGACTAGGAAATGTATCTAGGATCAGACTCAGCTGCTCTATGTGAAAATTCCCATGTTAATAATCCAAAATTAAGTGTTAACCATCTGTAACTAATGTTTGAGTGTCAAGGATCCGATAAGGTGAAATGTAGAGTCCAGGTTGATCAGTGTTGAAAGTATAGTGTCAAGTTGAAAGTTCTATAGCATGAGAGGATGGAGAACCTACTATTTGTATTTGATCAATGTTTTTAGGTGTTTTCCTAGAATCAACTTTAACTTGCCATATACGAATGAAAATCTCTTTTGATATTGCAAGGTGACATTTTACAGCGCAAATATTTGGCTATTATTGATTAATTTGTCGATATCATAATTGAATTTGTTGTGGATCGAGTGTTGATTTGAGGAAATTTGTATAATACGCATACATGATTGTATGCTTTTAGTTGATAATTTTTATTCACTTTATGTGTGAAGGACTTTAAGGGAAATTAAAGGTATTTAAGAATTTAATTTGTTTGCTTTTAATGCAAGGATATTTAGCTTGAATTTACGTTGACTAATTAAAAGTTAAATGATTGAATTTGAAGCTGATTAGGTATTTGTGATTATGAATTAACATGTTCTGGAAGTGGATGAAAATGGCGCACGAGACAACAAGAAGATGAGAATCATACCAAGGCACATTCAATTGGCTATTAGGAACGATGAAGAGAATCATACCAGTTAAGCGAGGAGGCGGGTTTTGAGTATTATTGGTTGTTCTAAAAATATCATCCTGTCTTGATTTTATGTCTTCTTTTCCTGTCGTACTTTAAGTAGATTCTGCCTCTTTTATGTTGCAGGTAACAAAACAACACAGTAATGGCTGCAAAAAACTACTAGGATTGAACGATCCTGAAGAGAAGATGAGATTACTTCAGTTAGGGCAAGAGGAGGTTGCGAGAATGGAGAGGGAGCGGCTAAAGTTTAAGTAG

mRNA sequence

ATGCTTCAGAATATTATAACTCTTCAAGGCTGTTGCATTCATGGTGATTCTCGATTTCTTGTGTATGAACTTATGGAAAATGGATGCCTGGAAACTCAGTTGCACGTGGATGAAAATGGCGCACGAGACAACAAGAAGATGAGAATCATACCAAGGCACATTCAATTGGCTATTAGGAACGATGAAGAGAATCATACCAATTCTGCCTCTTTTATGTTGCAGGTAACAAAACAACACAGTAATGGCTGCAAAAAACTACTAGGATTGAACGATCCTGAAGAGAAGATGAGATTACTTCAGTTAGGGCAAGAGGAGGTTGCGAGAATGGAGAGGGAGCGGCTAAAGTTTAAGTAG

Coding sequence (CDS)

ATGCTTCAGAATATTATAACTCTTCAAGGCTGTTGCATTCATGGTGATTCTCGATTTCTTGTGTATGAACTTATGGAAAATGGATGCCTGGAAACTCAGTTGCACGTGGATGAAAATGGCGCACGAGACAACAAGAAGATGAGAATCATACCAAGGCACATTCAATTGGCTATTAGGAACGATGAAGAGAATCATACCAATTCTGCCTCTTTTATGTTGCAGGTAACAAAACAACACAGTAATGGCTGCAAAAAACTACTAGGATTGAACGATCCTGAAGAGAAGATGAGATTACTTCAGTTAGGGCAAGAGGAGGTTGCGAGAATGGAGAGGGAGCGGCTAAAGTTTAAGTAG

Protein sequence

MLQNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGARDNKKMRIIPRHIQLAIRNDEENHTNSASFMLQVTKQHSNGCKKLLGLNDPEEKMRLLQLGQEEVARMERERLKFK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05445.1Spo05445.1mRNA


Homology
[Close]
BLAST of Spo05445.1 vs. NCBI nr
Match: gi|731316793|ref|XP_010665786.1| (PREDICTED: probable receptor-like protein kinase At1g80640 isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L GCCIHGD+RFLVYE+MENGCLETQLH    G+
Sbjct: 202 QNIINLLGCCIHGDTRFLVYEIMENGCLETQLHGVSRGS 240
[Close]
BLAST of Spo05445.1 vs. NCBI nr
Match: gi|731316795|ref|XP_010665794.1| (PREDICTED: probable receptor-like protein kinase At1g80640 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L GCCIHGD+RFLVYE+MENGCLETQLH    G+
Sbjct: 202 QNIINLLGCCIHGDTRFLVYEIMENGCLETQLHGVSRGS 240
[Close]
BLAST of Spo05445.1 vs. NCBI nr
Match: gi|902187753|gb|KNA10981.1| (hypothetical protein SOVF_139360 [Spinacia oleracea])

HSP 1 Score: 70.1 bits (170), Expect = 2.900e-9
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNIITL G CIHGDSRFLVYELMENGCLETQLH    G+
Sbjct: 161 QNIITLLGYCIHGDSRFLVYELMENGCLETQLHGVSRGS 199
[Close]
BLAST of Spo05445.1 vs. NCBI nr
Match: gi|1021572801|ref|XP_016177494.1| (PREDICTED: probable receptor-like protein kinase At1g80640 [Arachis ipaensis])

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-7
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L G CIHG+SRFLVYELMENG LETQLH    G+
Sbjct: 171 QNIIKLMGYCIHGESRFLVYELMENGSLETQLHGPNRGS 209
[Close]
BLAST of Spo05445.1 vs. NCBI nr
Match: gi|950971361|ref|XP_014500297.1| (PREDICTED: probable receptor-like protein kinase At1g80640 [Vigna radiata var. radiata])

HSP 1 Score: 63.9 bits (154), Expect = 2.100e-7
Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L G C+HG SRFLVYELMENG LETQLH    GA
Sbjct: 189 QNIIKLMGYCVHGQSRFLVYELMENGSLETQLHGPNRGA 227
[Close]
BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FTJ6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g031070 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.600e-9
Identity = 30/39 (76.92%), Postives = 33/39 (84.62%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII L GCCIHGD+RFLVYE+MENGCLETQLH    G+
Sbjct: 202 QNIINLLGCCIHGDTRFLVYEIMENGCLETQLHGVSRGS 240
[Close]
BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWS0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_139360 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.000e-9
Identity = 32/39 (82.05%), Postives = 33/39 (84.62%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNIITL G CIHGDSRFLVYELMENGCLETQLH    G+
Sbjct: 161 QNIITLLGYCIHGDSRFLVYELMENGCLETQLHGVSRGS 199
[Close]
BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: I1M5X9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G369100 PE=4 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-7
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII + G CIHG+SRFLVYELMENG LETQLH    G+
Sbjct: 189 QNIIKIMGYCIHGESRFLVYELMENGSLETQLHGPNRGS 227
[Close]
BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: F6HXT5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g09090 PE=3 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-7
Identity = 25/39 (64.10%), Postives = 33/39 (84.62%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNI++L GCCIHG++RFLVYE+M+NG LE QLH   +G+
Sbjct: 152 QNIVSLLGCCIHGETRFLVYEMMQNGSLEAQLHGPSHGS 190
[Close]
BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RF00_GLYSO (Putative receptor-like protein kinase OS=Glycine soja GN=glysoja_036208 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 2.500e-7
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1 

		  

Query: 3   QNIITLQGCCIHGDSRFLVYELMENGCLETQLHVDENGA 42
           QNII + G CIHG+SRFLVYELMENG LETQLH    G+
Sbjct: 189 QNIIKMMGYCIHGESRFLVYELMENGSLETQLHGPNRGS 227
[Close]
BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT5G54640.1 (Histone superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 

		  

Query: 34 LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
          L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 65 LELAGNAARDNKKTRIVPRHIQLAVRNDEE 94
[Close]
BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT1G51060.1 (histone H2A 10)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 

		  

Query: 34 LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
          L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 65 LELAGNAARDNKKTRIVPRHIQLAVRNDEE 94
[Close]
BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT1G08880.1 (Histone superfamily protein)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 

		  

Query: 34  LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
           L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEE 100
[Close]
BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT1G54690.1 (gamma histone variant H2AX)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 

		  

Query: 34  LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
           L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 71  LELAGNAARDNKKTRIVPRHIQLAVRNDEE 100
[Close]
BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Match: AT4G27230.1 (histone H2A 2)

HSP 1 Score: 49.3 bits (116), Expect = 1.900e-6
Identity = 22/30 (73.33%), Postives = 25/30 (83.33%), Query Frame = 1 

		  

Query: 34 LHVDENGARDNKKMRIIPRHIQLAIRNDEE 64
          L +  N ARDNKK RI+PRHIQLA+RNDEE
Sbjct: 65 LELAGNAARDNKKTRIVPRHIQLAVRNDEE 94
The following BLAST results are available for this feature:
BLAST of Spo05445.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731316793|ref|XP_010665786.1|2.2e-976.9PREDICTED: probable receptor-l... [more]
gi|731316795|ref|XP_010665794.1|2.2e-976.9PREDICTED: probable receptor-l... [more]
gi|902187753|gb|KNA10981.1|2.9e-982.0hypothetical protein SOVF_1393... [more]
gi|1021572801|ref|XP_016177494.1|2.1e-774.3PREDICTED: probable receptor-l... [more]
gi|950971361|ref|XP_014500297.1|2.1e-774.3PREDICTED: probable receptor-l... [more]
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BLAST of Spo05445.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8FTJ6_BETVU1.6e-976.9Uncharacterized protein OS=Bet... [more]
A0A0K9QWS0_SPIOL2.0e-982.0Uncharacterized protein OS=Spi... [more]
I1M5X9_SOYBN2.5e-771.7Uncharacterized protein OS=Gly... [more]
F6HXT5_VITVI2.5e-764.1Putative uncharacterized prote... [more]
A0A0B2RF00_GLYSO2.5e-771.7Putative receptor-like protein... [more]
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BLAST of Spo05445.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05445.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT5G54640.11.9e-673.3Histone superfamily protein[more]
AT1G51060.11.9e-673.3histone H2A 10[more]
AT1G08880.11.9e-673.3Histone superfamily protein[more]
AT1G54690.11.9e-673.3gamma histone variant H2AX[more]
AT4G27230.11.9e-673.3histone H2A 2[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001245Serine-threonine/tyrosine-protein kinase catalytic domainPFAMPF07714Pkinase_Tyrcoord: 3..84
score: 1.
IPR009072Histone-foldGENE3D1.10.20.10coord: 38..66
score: 9.7
IPR009072Histone-foldunknownSSF47113Histone-foldcoord: 39..63
score: 1.3
IPR011009Protein kinase-like domainunknownSSF56112Protein kinase-like (PK-like)coord: 3..41
score: 8.5
NoneNo IPR availableGENE3D3.30.200.20coord: 3..27
score: 2.
NoneNo IPR availablePANTHERPTHR23430HISTONE H2Acoord: 41..63
score: 1.5

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0005983 starch catabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0006457 protein folding
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009409 response to cold
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0046838 phosphorylated carbohydrate dephosphorylation
biological_process GO:0000023 maltose metabolic process
biological_process GO:0009269 response to desiccation
biological_process GO:0009651 response to salt stress
cellular_component GO:0009507 chloroplast
cellular_component GO:0016020 membrane
cellular_component GO:0005739 mitochondrion
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0004519 endonuclease activity
molecular_function GO:0005515 protein binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0019905 syntaxin binding
molecular_function GO:0050308 sugar-phosphatase activity
molecular_function GO:2001070 starch binding
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo001900.75Barchart | Table
Spo054440.75Barchart | Table
Spo070790.73Barchart | Table
Spo024990.73Barchart | Table
Spo145890.72Barchart | Table
Spo085040.72Barchart | Table
Spo036090.72Barchart | Table
Spo072090.72Barchart | Table
Spo237710.72Barchart | Table
Spo197930.71Barchart | Table
Spo018010.71Barchart | Table
Spo176300.71Barchart | Table
Spo269950.70Barchart | Table
Spo196410.70Barchart | Table
Spo150890.70Barchart | Table
Spo110690.69Barchart | Table
Spo084160.69Barchart | Table
Spo059280.69Barchart | Table
Spo172350.69Barchart | Table
Spo255050.69Barchart | Table
Spo170980.69Barchart | Table
Spo027490.69Barchart | Table
Spo250160.69Barchart | Table
Spo081470.69Barchart | Table
Spo214220.69Barchart | Table
Spo273310.68Barchart | Table
Spo172250.68Barchart | Table
Spo046390.68Barchart | Table
Spo163140.68Barchart | Table
Spo131740.68Barchart | Table
Spo142400.68Barchart | Table
Spo020650.68Barchart | Table
Spo248610.68Barchart | Table
Spo033570.68Barchart | Table
Spo238560.68Barchart | Table
Spo022540.68Barchart | Table
Spo101620.68Barchart | Table
Spo102330.68Barchart | Table
Spo011960.68Barchart | Table
Spo236730.68Barchart | Table
Spo223220.68Barchart | Table
Spo207880.68Barchart | Table
Spo116800.67Barchart | Table
Spo070350.67Barchart | Table
Spo030020.67Barchart | Table
Spo088840.67Barchart | Table
Spo165840.67Barchart | Table
Spo181160.67Barchart | Table
Spo017990.67Barchart | Table
Spo198070.67Barchart | Table
Spo262140.67Barchart | Table
Spo116730.66Barchart | Table
Spo224360.66Barchart | Table
Spo224580.66Barchart | Table
Spo187760.66Barchart | Table
Spo105680.66Barchart | Table
Spo195540.66Barchart | Table
Spo081500.66Barchart | Table
Spo111900.66Barchart | Table
Spo040950.66Barchart | Table
Spo052690.66Barchart | Table
Spo152430.66Barchart | Table
Spo153910.66Barchart | Table
Spo133200.66Barchart | Table
Spo054500.66Barchart | Table
Spo113840.66Barchart | Table
Spo111600.66Barchart | Table
Spo177840.66Barchart | Table
Spo258790.66Barchart | Table
Spo168040.65Barchart | Table
Spo171230.65Barchart | Table
Spo116400.65Barchart | Table
Spo173860.65Barchart | Table
Spo181790.65Barchart | Table
Spo198250.65Barchart | Table
Spo208580.65Barchart | Table
Spo108950.65Barchart | Table
Spo108600.65Barchart | Table
Spo106610.65Barchart | Table
Spo238410.65Barchart | Table
Spo246670.65Barchart | Table
Spo058970.65Barchart | Table
Spo056210.65Barchart | Table
Spo125070.65Barchart | Table