|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. GTTAACCATCTCTAAACAACACAATCTGAAAAGACATAAATACCCTCCGCACCACACCACTAGTACGGGGAGTATCCGTATTTGGCAATTGGCATTTAAGCGACCCCTCGGTCCCCTTTTTCTCCTCTCTCTCCTCAATCTGACAATGGCAGTATCAGTGGAGGCGGGAACTGCCGTTATCCTCACTCTCTCTCCTCCTCCTCTGACTGCCGCCAATTTCCGCCGCCGATTTCCTAAATCTCTGAGACAATCTTCGCTCTTTTCCGGCGTTTCTCTCACTATTCGCTCTCCAAATTTTCGCAATATCACTGTCTCTCAAAGGTCTAGCCAGGTACTGTGAATTTTTGAATTCCTTGTTACCATTGTTACTTGATTTTGTGATTTTTCAGGTGTGTTTTTGATTTTAGGGTTTCGCTGTCGTTTTTGGGAATAGAATTGAAGAATATGTGGTTAGAATGTGTCAATTGCTTGTGAAACTGGAAAAAAAAAAGTGTAGTTTCATTTGACGACTGAATTTTGTAAAATTTCATGTTTCTTTCTGAAGTCTTTGGTAATTCGTATTGTCGTAATGCATGTTATTAGCTTAAGATTAGCGATCGGTATGAAACTGTGAGAGTTATTCTCCTTATACTTGTGTTTGAACAGCTTTGGTCAAATGTTTCTTTTGCCAATAGTTTTCGATAAGCTCTTTATAAGCCTCCTTGTTGGAATCGAGTTCAATATGATCCATAGAAACCACATCCATGATTATTATGCAATAATGGAACATGTTAGCTTGTAATAGTAGGAACAGTACAGAATTTCCGTTATGTTTGTTATTATATTCGCTTAAGATCCAGGACGGTTGTGAAAGTGATGCTAGCTTATATCTATACCTGTTTGAACAACTTCCACTACACCTTGCCTTTGTCAATAGGTTTCAGTATGATCTCTATAAGCTTCCTTATCAGAATCGGGTTAGGATCCATAGGAACCATATCTAAATACGTTTCACCCATGATTTTAATGAATTAGTTGAATATCTTAACTTAAAATGACTGTGTGATTGGTGCCTGGTGGTGCTGGATGAGGTCATAAAATCGAACATGGTAGAAGATAATCTAGTCTATAATACATCCAGGTATCCACTTTGACTTCTTTTTTCATATTGGTGAAGAGTTTTGGTGTTGGTTGCACTTGAATTTTAATATGGCCAACTGACCATTTACTACTGAAGGCTGATGTGAGGAAGTCGGGAGTGGTATTTTGATAATGGAGGGAAGACAATGTTCCGTTCTTGGATAGTACAATATGTAAAGTGTGGCTGTAATCATGTTGCCTAAGGAATAATTGATTGGCCGGTTTTGTTTCAGGGGGATTTTTATGGAAGCAGCAAAGATCTTAGTTTGACACCTACACCGGTGTTAACATTTGCGAAAGGATTGCTGAAATTTGTGTTATCTAACTTTCTACCGCTAGGTAAGTTTCTCAACTCATTTGAAATTATTTAGAACTTATTTTAGTTATGTATTGAACTTTGGTGGCTTATCTGAACTTATTTCTTTTGAAAAATATTTTGTTCACATTTATGATCGTAACCTTGATTGAGTGAAATGTGAATTATGATGGCTGATTGTAGATTTCTGTACTGTTGTGTAACTTCTGTTTGTTGATCAATCCTAATAGATGAAACTTCCCTGCTGCTTAACAAGTTTAGGGACAATGATCTTTTTGGGATAATTTGCCCATGATGGCACTTCTTAGTCTTTGTGCAAGTCTTCATGCAGACATTTCAGCTGGTATTTCATTATAAAATGACAAATCTGGAAGTATCATTAATTGGTTTTGTTCTGCATGAGATACATTGCTTTCTTGTCAAGATATGAATTAAAAGTATGAAATACTATTGACTTTTCCCATTACTTTTTTGATGATTGCAACTTAACGATATGTATGTGTAGGCATTAAAAATGTCATAAATGCCACGTCATCATTTTTGTCCCGGAAAAGTCAAAGGTTGACTTATATTTATTAAAATGACAAGTAAACTAGTTAATTTGGGTTTTACACAAAACAAGCCCAATTTAATCAAATGACGTTCATTTAATGAATATGGGTTATTTAAACGGATCTAAGTAAACAGGCCCATTTAGTTATCAAAAGGAAAACCCTAAACCCAGAAGAATGATATAAAACGCTTAGTTTTAAAAAGCGCGAAGCGCACCGAAGCGCACAAGGGCCCTGGGGCTTAAGCGCAAAGCGCAAAGCGAAAGCGCACGCTTCTCGTAGGCGAAGCGCACCTTAAGTGCTAAAAACCTATAAAATCGTTTCTAGAACATATTTTGTACTTAAAACAACATACTACTTATATTATAAATGCATAAATTAACAAAGGGAAGCATAATTCATTACTAGACACCAAACCGGAATACCTCCAAGAGGGTAAAGTACTAACCAAAGACTTAGAGTAAGTCACGGGCTAACAAAAATCACAACCAGCATAAAACAAATAAGTAGAAAGACAGGAAAAAAAG mRNA sequence GTTAACCATCTCTAAACAACACAATCTGAAAAGACATAAATACCCTCCGCACCACACCACTAGTACGGGGAGTATCCGTATTTGGCAATTGGCATTTAAGCGACCCCTCGGTCCCCTTTTTCTCCTCTCTCTCCTCAATCTGACAATGGCAGTATCAGTGGAGGCGGGAACTGCCGTTATCCTCACTCTCTCTCCTCCTCCTCTGACTGCCGCCAATTTCCGCCGCCGATTTCCTAAATCTCTGAGACAATCTTCGCTCTTTTCCGGCGTTTCTCTCACTATTCGCTCTCCAAATTTTCGCAATATCACTGTCTCTCAAAGGTCTAGCCAGGGGGATTTTTATGGAAGCAGCAAAGATCTTAGTTTGACACCTACACCGGTGTTAACATTTGCGAAAGGATTGCTGAAATTTGTGTTATCTAACTTTCTACCGCTAGGTAAGTTTCTCAACTCATTTGAAATTATTTAGAACTTATTTTAGTTATGTATTGAACTTTGGTGGCTTATCTGAACTTATTTCTTTTGAAAAATATTTTGTTCACATTTATGATCGTAACCTTGATTGAGTGAAATGTGAATTATGATGGCTGATTGTAGATTTCTGTACTGTTGTGTAACTTCTGTTTGTTGATCAATCCTAATAGATGAAACTTCCCTGCTGCTTAACAAGTTTAGGGACAATGATCTTTTTGGGATAATTTGCCCATGATGGCACTTCTTAGTCTTTGTGCAAGTCTTCATGCAGACATTTCAGCTGGTATTTCATTATAAAATGACAAATCTGGAAGTATCATTAATTGGTTTTGTTCTGCATGAGATACATTGCTTTCTTGTCAAGATATGAATTAAAAGTATGAAATACTATTGACTTTTCCCATTACTTTTTTGATGATTGCAACTTAACGATATGTATGTGTAGGCATTAAAAATGTCATAAATGCCACGTCATCATTTTTGTCCCGGAAAAGTCAAAGGTTGACTTATATTTATTAAAATGACAAGTAAACTAGTTAATTTGGGTTTTACACAAAACAAGCCCAATTTAATCAAATGACGTTCATTTAATGAATATGGGTTATTTAAACGGATCTAAGTAAACAGGCCCATTTAGTTATCAAAAGGAAAACCCTAAACCCAGAAGAATGATATAAAACGCTTAGTTTTAAAAAGCGCGAAGCGCACCGAAGCGCACAAGGGCCCTGGGGCTTAAGCGCAAAGCGCAAAGCGAAAGCGCACGCTTCTCGTAGGCGAAGCGCACCTTAAGTGCTAAAAACCTATAAAATCGTTTCTAGAACATATTTTGTACTTAAAACAACATACTACTTATATTATAAATGCATAAATTAACAAAGGGAAGCATAATTCATTACTAGACACCAAACCGGAATACCTCCAAGAGGGTAAAGTACTAACCAAAGACTTAGAGTAAGTCACGGGCTAACAAAAATCACAACCAGCATAAAACAAATAAGTAGAAAGACAGGAAAAAAAG Coding sequence (CDS) ATGGCAGTATCAGTGGAGGCGGGAACTGCCGTTATCCTCACTCTCTCTCCTCCTCCTCTGACTGCCGCCAATTTCCGCCGCCGATTTCCTAAATCTCTGAGACAATCTTCGCTCTTTTCCGGCGTTTCTCTCACTATTCGCTCTCCAAATTTTCGCAATATCACTGTCTCTCAAAGGTCTAGCCAGGGGGATTTTTATGGAAGCAGCAAAGATCTTAGTTTGACACCTACACCGGTGTTAACATTTGCGAAAGGATTGCTGAAATTTGTGTTATCTAACTTTCTACCGCTAGGTAAGTTTCTCAACTCATTTGAAATTATTTAG Protein sequence MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRSSQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPLGKFLNSFEII
Relationships
The following mRNA feature(s) are a part of this gene:
| Feature Name | Unique Name | Type |
|---|
| Spo05535.1 | Spo05535.1 | mRNA |
Homology
BLAST of Spo05535.1 vs. NCBI nr
Match: gi|902230667|gb|KNA21938.1| (hypothetical protein SOVF_038660 isoform B [Spinacia oleracea]) HSP 1 Score: 184.5 bits (467), Expect = 9.700e-44 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
Query: 1 MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS
Sbjct: 1 MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL
Sbjct: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 97
BLAST of Spo05535.1 vs. NCBI nr
Match: gi|731349505|ref|XP_010686026.1| (PREDICTED: probable sodium/metabolite cotransporter BASS4, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 125.9 bits (315), Expect = 4.100e-26 Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1
Query: 1 MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
MAVS+EAGTAVILTLSPPP+ A FRRRF SL +SSLFSG SL+ R+ N R +VSQR
Sbjct: 1 MAVSMEAGTAVILTLSPPPIPAI-FRRRFQNSLGKSSLFSGTSLSTRTSNLRIFSVSQRP 60
Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
SQGDFYG S D++LTP VLTFAKGLLKF+ +N LPL
Sbjct: 61 SQGDFYGGSNDVTLTPVSVLTFAKGLLKFIFANLLPL 96
BLAST of Spo05535.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RR44_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_038660 PE=4 SV=1) HSP 1 Score: 184.5 bits (467), Expect = 6.800e-44 Identity = 97/97 (100.00%), Postives = 97/97 (100.00%), Query Frame = 1
Query: 1 MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS
Sbjct: 1 MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL
Sbjct: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 97
BLAST of Spo05535.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BWH2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g176210 PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 2.900e-26 Identity = 68/97 (70.10%), Postives = 78/97 (80.41%), Query Frame = 1
Query: 1 MAVSVEAGTAVILTLSPPPLTAANFRRRFPKSLRQSSLFSGVSLTIRSPNFRNITVSQRS 60
MAVS+EAGTAVILTLSPPP+ A FRRRF SL +SSLFSG SL+ R+ N R +VSQR
Sbjct: 1 MAVSMEAGTAVILTLSPPPIPAI-FRRRFQNSLGKSSLFSGTSLSTRTSNLRIFSVSQRP 60
Query: 61 SQGDFYGSSKDLSLTPTPVLTFAKGLLKFVLSNFLPL 98
SQGDFYG S D++LTP VLTFAKGLLKF+ +N LPL
Sbjct: 61 SQGDFYGGSNDVTLTPVSVLTFAKGLLKFIFANLLPL 96
The following BLAST results are available for this feature:
BLAST of Spo05535.1 vs. NCBI nr
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 2
back to top
BLAST of Spo05535.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 2
back to top
BLAST of Spo05535.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
back to top
BLAST of Spo05535.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 ( blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
| Match Name | E-value | Identity | Description | |
|---|
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015995 |
chlorophyll biosynthetic process |
| biological_process |
GO:0006782 |
protoporphyrinogen IX biosynthetic process |
| biological_process |
GO:0043631 |
RNA polyadenylation |
| biological_process |
GO:0008152 |
metabolic process |
| biological_process |
GO:0006506 |
GPI anchor biosynthetic process |
| biological_process |
GO:0090305 |
nucleic acid phosphodiester bond hydrolysis |
| cellular_component |
GO:0009941 |
chloroplast envelope |
| cellular_component |
GO:0009570 |
chloroplast stroma |
| molecular_function |
GO:0004853 |
uroporphyrinogen decarboxylase activity |
| molecular_function |
GO:0004652 |
polynucleotide adenylyltransferase activity |
| molecular_function |
GO:0003924 |
GTPase activity |
| molecular_function |
GO:0005525 |
GTP binding |
| molecular_function |
GO:0004519 |
endonuclease activity |
| molecular_function |
GO:0016758 |
transferase activity, transferring hexosyl groups |
|
