Spo05710 (gene)

Overview
NameSpo05710
Typegene
OrganismSpinacia oleracea (Spinach)
Description60S ribosome subunit biogenesis protein NIP7 homolog
Locationchr5 : 15097820 .. 15098389 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACCCTAGACGAACAAGAAACCACCATCGTCTTCGAGAAGCTCTTCAAGTTCGTCGGCAATAACCTCAAGAACATCGTCGACAACCCGTCGTACGAAGGCCCGGCCCAGGACCCGCTCCCAGGCCGCTACTGCTTCCGCCTCCAGAAGAATCGTGTATACTACGCTAGTGAATCGCTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGTTGGTTTCGCTAGGAGTACAAGTCGGGAAGTTCACCCACAATGGCAACTTCCATCTCACAATCCACGCTTTATCTCTCCTTGCACCGAATGCGAAGCACAAGGTATGGCTGAAACCCACATCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATTAATGCTGGTGATGGGATTGTTGTTTATTCCATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCGGACCCGCAAACTATGGTAGTTATTCATCAGGGTGATATTGGTGAGTATTTGAGGTTGGAGGATGAACTTTGA

mRNA sequence

ATGAGAACCCTAGACGAACAAGAAACCACCATCGTCTTCGAGAAGCTCTTCAAGTTCGTCGGCAATAACCTCAAGAACATCGTCGACAACCCGTCGTACGAAGGCCCGGCCCAGGACCCGCTCCCAGGCCGCTACTGCTTCCGCCTCCAGAAGAATCGTGTATACTACGCTAGTGAATCGCTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGTTGGTTTCGCTAGGAGTACAAGTCGGGAAGTTCACCCACAATGGCAACTTCCATCTCACAATCCACGCTTTATCTCTCCTTGCACCGAATGCGAAGCACAAGGTATGGCTGAAACCCACATCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATTAATGCTGGTGATGGGATTGTTGTTTATTCCATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCGGACCCGCAAACTATGGTAGTTATTCATCAGGGTGATATTGGTGAGTATTTGAGGTTGGAGGATGAACTTTGA

Coding sequence (CDS)

ATGAGAACCCTAGACGAACAAGAAACCACCATCGTCTTCGAGAAGCTCTTCAAGTTCGTCGGCAATAACCTCAAGAACATCGTCGACAACCCGTCGTACGAAGGCCCGGCCCAGGACCCGCTCCCAGGCCGCTACTGCTTCCGCCTCCAGAAGAATCGTGTATACTACGCTAGTGAATCGCTCGTGAAACGCGCAACAAACGTTTCGAAGGAGCTGTTGGTTTCGCTAGGAGTACAAGTCGGGAAGTTCACCCACAATGGCAACTTCCATCTCACAATCCACGCTTTATCTCTCCTTGCACCGAATGCGAAGCACAAGGTATGGCTGAAACCCACATCAGAGATGTCGTTTTTGTATGGGAATGCTGTGTTGAAGGCTCATTTAGGGAGGATTACTGAAGATATTAATGCTGGTGATGGGATTGTTGTTTATTCCATGTCTGATGTTCCTTTGGGTTTCGGAATCGCCACCAAATCGACCAAGGATGTTCGTAAATCGGACCCGCAAACTATGGTAGTTATTCATCAGGGTGATATTGGTGAGTATTTGAGGTTGGAGGATGAACTTTGA

Protein sequence

MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASESLVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYGNAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIGEYLRLEDEL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05710.1Spo05710.1mRNA


Homology
[Close]
BLAST of Spo05710.1 vs. NCBI nr
Match: gi|902186883|gb|KNA10804.1| (hypothetical protein SOVF_140980 [Spinacia oleracea])

HSP 1 Score: 384.0 bits (985), Expect = 1.500e-103
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRLEDEL 190
           EYLRLEDEL
Sbjct: 181 EYLRLEDEL 189
[Close]
BLAST of Spo05710.1 vs. NCBI nr
Match: gi|902227647|gb|KNA20771.1| (hypothetical protein SOVF_049390 [Spinacia oleracea])

HSP 1 Score: 383.3 bits (983), Expect = 2.500e-103
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALS+LAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSILAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRLEDEL 190
           EYLRLEDEL
Sbjct: 181 EYLRLEDEL 189
[Close]
BLAST of Spo05710.1 vs. NCBI nr
Match: gi|731314461|ref|XP_010686698.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 356.3 bits (913), Expect = 3.300e-95
Identity = 174/189 (92.06%), Postives = 180/189 (95.24%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH+G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDINAGDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRLEDEL 190
           EYLR+EDEL
Sbjct: 181 EYLRMEDEL 189
[Close]
BLAST of Spo05710.1 vs. NCBI nr
Match: gi|731314463|ref|XP_010686700.1| (PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 355.5 bits (911), Expect = 5.600e-95
Identity = 174/189 (92.06%), Postives = 180/189 (95.24%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPGPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH+G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDINAGDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRLEDEL 190
           EYLR+EDEL
Sbjct: 181 EYLRMEDEL 189
[Close]
BLAST of Spo05710.1 vs. NCBI nr
Match: gi|731314513|ref|XP_010686892.1| (PREDICTED: LOW QUALITY PROTEIN: 60S ribosome subunit biogenesis protein NIP7 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 354.4 bits (908), Expect = 1.300e-94
Identity = 173/189 (91.53%), Postives = 179/189 (94.71%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGPAQDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPAQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH+G+FHLTIHA   LA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHATPFLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDINAGDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRLEDEL 190
           EYLR+EDEL
Sbjct: 181 EYLRMEDEL 189
[Close]
BLAST of Spo05710.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU63_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_140980 PE=3 SV=1)

HSP 1 Score: 384.0 bits (985), Expect = 1.000e-103
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRLEDEL 190
           EYLRLEDEL
Sbjct: 181 EYLRLEDEL 189
[Close]
BLAST of Spo05710.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RMM2_SPIOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Spinacia oleracea GN=SOVF_049390 PE=3 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 1.800e-103
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALS+LAPNAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSILAPNAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG
Sbjct: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180

Query: 181 EYLRLEDEL 190
           EYLRLEDEL
Sbjct: 181 EYLRLEDEL 189
[Close]
BLAST of Spo05710.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D4Y2_BETVU (60S ribosome subunit biogenesis protein NIP7 homolog OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g014050 PE=3 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.300e-95
Identity = 174/189 (92.06%), Postives = 180/189 (95.24%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MRTLDEQETT VFEKLFKFVGNNLKNIVDNPSYEGP QDP P RYCFRLQKNRVYYASES
Sbjct: 1   MRTLDEQETTTVFEKLFKFVGNNLKNIVDNPSYEGPGQDPSPRRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATNVSKE LVSLGVQVGKFTH+G+FHLTIHAL LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNVSKEKLVSLGVQVGKFTHHGSFHLTIHALPLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N++LKAHLGRITEDINAGDGIVVYSMSD+PLGFGIATKSTKDVRKSDPQ MVVIHQ DIG
Sbjct: 121 NSILKAHLGRITEDINAGDGIVVYSMSDLPLGFGIATKSTKDVRKSDPQVMVVIHQADIG 180

Query: 181 EYLRLEDEL 190
           EYLR+EDEL
Sbjct: 181 EYLRMEDEL 189
[Close]
BLAST of Spo05710.1 vs. UniProtKB/TrEMBL
Match: A0A0D3DEA0_BRAOL (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica oleracea var. oleracea PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.300e-77
Identity = 146/189 (77.25%), Postives = 164/189 (86.77%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEK+FKFVGNNLKNIV+NPS+EGP  DP  GRYCFRLQKNRVYYASES
Sbjct: 1   MRPLDENETTVVFEKIFKFVGNNLKNIVENPSHEGPESDP--GRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVSLG  +GK+TH G+FHLTI +L+LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKSLVSLGTCIGKYTHAGSFHLTIMSLNLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DIG
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIG 180

Query: 181 EYLRLEDEL 190
           EYLR EDEL
Sbjct: 181 EYLRDEDEL 187
[Close]
BLAST of Spo05710.1 vs. UniProtKB/TrEMBL
Match: A0A078F8S2_BRANA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Brassica napus GN=BnaC07g33200D PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.300e-77
Identity = 146/189 (77.25%), Postives = 164/189 (86.77%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEK+FKFVGNNLKNIV+NPS+EGP  DP  GRYCFRLQKNRVYYASES
Sbjct: 1   MRPLDENETTVVFEKIFKFVGNNLKNIVENPSHEGPESDP--GRYCFRLQKNRVYYASES 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVSLG  +GK+TH G+FHLTI +L+LLA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKSLVSLGTCIGKYTHAGSFHLTIMSLNLLAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DIG
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIG 180

Query: 181 EYLRLEDEL 190
           EYLR EDEL
Sbjct: 181 EYLRDEDEL 187
[Close]
BLAST of Spo05710.1 vs. ExPASy Swiss-Prot
Match: NIP7_RAT (60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus norvegicus GN=Nip7 PE=2 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.100e-53
Identity = 105/189 (55.56%), Postives = 132/189 (69.84%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEM 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT    F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  ILKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDFLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+DVPLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 179

Query: 181 EYLRLEDEL 190
           EY+R E+ L
Sbjct: 181 EYIRHEETL 179
[Close]
BLAST of Spo05710.1 vs. ExPASy Swiss-Prot
Match: NIP7_XENTR (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus tropicalis GN=nip7 PE=2 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.400e-53
Identity = 103/189 (54.50%), Postives = 133/189 (70.37%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L ++ET  +FEKL K++G N+K +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTDEETKAMFEKLSKYIGENIKLLVDRPD----------GTYCFRLHNDRVYYVSER 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K ATN++++ LVSLG   GKFT    F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  ILKLATNIARDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST++ RK DP  +VV HQ D+G
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQECRKLDPMAIVVFHQADVG 179

Query: 181 EYLRLEDEL 190
           EY+R ED L
Sbjct: 181 EYIRHEDTL 179
[Close]
BLAST of Spo05710.1 vs. ExPASy Swiss-Prot
Match: NIP7_HUMAN (60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo sapiens GN=NIP7 PE=1 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.800e-53
Identity = 104/189 (55.03%), Postives = 132/189 (69.84%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT    F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  IMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 179

Query: 181 EYLRLEDEL 190
           EY+R E+ L
Sbjct: 181 EYVRHEETL 179
[Close]
BLAST of Spo05710.1 vs. ExPASy Swiss-Prot
Match: NIP7_PONAB (60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo abelii GN=NIP7 PE=2 SV=1)

HSP 1 Score: 210.3 bits (534), Expect = 1.800e-53
Identity = 104/189 (55.03%), Postives = 132/189 (69.84%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L E+ET ++FEK+ K++G NL+ +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTEEETRVMFEKIAKYIGENLQLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K A N+S + LVSLG   GKFT    F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  IMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+D+PLGFG+A KST+D RK DP  +VV HQ DIG
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIG 179

Query: 181 EYLRLEDEL 190
           EY+R E+ L
Sbjct: 181 EYVRHEETL 179
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BLAST of Spo05710.1 vs. ExPASy Swiss-Prot
Match: NIP7_XENLA (60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus laevis GN=nip7 PE=2 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.400e-53
Identity = 103/189 (54.50%), Postives = 132/189 (69.84%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR L ++ET  +FEKL K++G N+K +VD P           G YCFRL  +RVYY SE 
Sbjct: 1   MRPLTDEETRAMFEKLSKYIGENIKLLVDRPD----------GTYCFRLHNDRVYYVSEK 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           ++K ATN++++ LVS G   GKFT    F L + AL  LAP AK+KVW+KP +E SFLYG
Sbjct: 61  ILKLATNIARDKLVSFGTCFGKFTKTQKFRLHVTALDYLAPYAKYKVWVKPGAEQSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK+ LGRITE+ +   G+VVYSM+DVPLGFG+A KST++ RK DP  +VV HQ D+G
Sbjct: 121 NHVLKSGLGRITENTSQYQGVVVYSMADVPLGFGVAAKSTQECRKLDPMAIVVFHQADVG 179

Query: 181 EYLRLEDEL 190
           EY+R ED L
Sbjct: 181 EYIRHEDTL 179
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BLAST of Spo05710.1 vs. TAIR (Arabidopsis)
Match: AT4G15770.1 (RNA binding)

HSP 1 Score: 282.7 bits (722), Expect = 1.600e-76
Identity = 139/189 (73.54%), Postives = 159/189 (84.13%), Query Frame = 1 

		  

Query: 1   MRTLDEQETTIVFEKLFKFVGNNLKNIVDNPSYEGPAQDPLPGRYCFRLQKNRVYYASES 60
           MR LDE ETT+VFEKLFKFVGNNLK IV+NPS EGP  +  PG YCFRLQKNRVYY SE+
Sbjct: 1   MRPLDETETTVVFEKLFKFVGNNLKKIVENPSDEGP--ESTPGSYCFRLQKNRVYYVSEA 60

Query: 61  LVKRATNVSKELLVSLGVQVGKFTHNGNFHLTIHALSLLAPNAKHKVWLKPTSEMSFLYG 120
           LVKRATN+S++ LVS G  +GK+TH G+FHLTI +L++LA NAKHKVWLKPTSEMSFLYG
Sbjct: 61  LVKRATNISRKNLVSFGTCIGKYTHAGSFHLTIMSLNILAANAKHKVWLKPTSEMSFLYG 120

Query: 121 NAVLKAHLGRITEDINAGDGIVVYSMSDVPLGFGIATKSTKDVRKSDPQTMVVIHQGDIG 180
           N VLK  LGRIT+ I  GDG+VV+SMSDVPLGFGIA KST+D RK DP  +VV+HQ DIG
Sbjct: 121 NHVLKGGLGRITDSIVPGDGVVVFSMSDVPLGFGIAAKSTQDCRKLDPNGIVVLHQADIG 180

Query: 181 EYLRLEDEL 190
           EYLR ED+L
Sbjct: 181 EYLRGEDDL 187
The following BLAST results are available for this feature:
BLAST of Spo05710.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902186883|gb|KNA10804.1|1.5e-103100.hypothetical protein SOVF_1409... [more]
gi|902227647|gb|KNA20771.1|2.5e-10399.4hypothetical protein SOVF_0493... [more]
gi|731314461|ref|XP_010686698.1|3.3e-9592.0PREDICTED: 60S ribosome subuni... [more]
gi|731314463|ref|XP_010686700.1|5.6e-9592.0PREDICTED: 60S ribosome subuni... [more]
gi|731314513|ref|XP_010686892.1|1.3e-9491.5PREDICTED: LOW QUALITY PROTEIN... [more]
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BLAST of Spo05710.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QU63_SPIOL1.0e-103100.60S ribosome subunit biogenesi... [more]
A0A0K9RMM2_SPIOL1.8e-10399.460S ribosome subunit biogenesi... [more]
A0A0J8D4Y2_BETVU2.3e-9592.060S ribosome subunit biogenesi... [more]
A0A0D3DEA0_BRAOL1.3e-7777.260S ribosome subunit biogenesi... [more]
A0A078F8S2_BRANA1.3e-7777.260S ribosome subunit biogenesi... [more]
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BLAST of Spo05710.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NIP7_RAT1.1e-5355.560S ribosome subunit biogenesi... [more]
NIP7_XENTR1.4e-5354.560S ribosome subunit biogenesi... [more]
NIP7_HUMAN1.8e-5355.060S ribosome subunit biogenesi... [more]
NIP7_PONAB1.8e-5355.060S ribosome subunit biogenesi... [more]
NIP7_XENLA2.4e-5354.560S ribosome subunit biogenesi... [more]
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BLAST of Spo05710.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G15770.11.6e-7673.5RNA binding[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002478PUA domainSMARTSM00359pua_5coord: 105..180
score: 3.
IPR002478PUA domainPROFILEPS50890PUAcoord: 104..180
score: 12
IPR005155Ribosome biogenesis factor NIP7-likePFAMPF03657UPF0113coord: 51..184
score: 1.
IPR015947PUA-like domainGENE3D2.30.130.10coord: 104..189
score: 1.7
IPR015947PUA-like domainunknownSSF88697PUA domain-likecoord: 105..180
score: 9.32
IPR016686Ribosome biogenesis factor, NIP7PIRPIRSF017190NIP7coord: 1..189
score: 3.1
NoneNo IPR availablePANTHERPTHR23415CYCLIN-DEPENDENT KINASES REGULATORY SUBUNIT/60S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7coord: 1..189
score: 4.3
NoneNo IPR availablePANTHERPTHR23415:SF460S RIBOSOME SUBUNIT BIOGENESIS PROTEIN NIP7 HOMOLOGcoord: 1..189
score: 4.3
NoneNo IPR availableunknownSSF88802Pre-PUA domaincoord: 1..103
score: 2.09

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042255 ribosome assembly
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006412 translation
biological_process GO:0000373 Group II intron splicing
biological_process GO:0009409 response to cold
biological_process GO:0001510 RNA methylation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0005840 ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0032991 protein-containing complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005618 cell wall
cellular_component GO:0032040 small-subunit processome
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005524 ATP binding
RNA-Seq Expression