Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGGAGCACTAGGGGGTGGGATGAAAGTGGTGGTTTTAGGGGCGAAGAATTCGTCTGTATTTGGTGGTTTTCCGGTGAATAATCCGTCGACAGTGGTGTGTTTCCCGTCGGAAATTAACCGGAAATTTGGAGGAGTGGCGGCTTGTGCTACTTCGCCGCCGACAACAAGGAAGCCGAGAGGAATAATGAAGCCGAGACCAATTTCTCCTGTTCTTCAAGAACTTGTGGGTGCTCCAGAAATTTCTAGAACCCAAGCTCTTAAGGTCATCTGGGCCCACATCAAAGCCAACAATCTTCAGGTTATCCCTTTCTCTAGACTCTATCATTCCAAAGTTTCTAATAATTTCGAGTGATTTTTAGGGTTTTATTTGTCTCTAATTTTTGCTGTTTTATGAATTGCATATTTTTGTGCATTTTTAGTAATTTCGGAGTAATATTTGAATTGTTTCTTGTTCTTGGGTGTTGGAAATATTACGTCTACTAGAGAGAATATTTTTTCTTGTTTGACATGTCAAAACTTTATAATTTTTTGTGTATGTTTTTAATTTTTGCGAAGTTAGATGGTAAACTAATATCTGTGGATTAAGATAATAGAGATTATACTGGTTTCCATGTTTGGATAGTGATTTTTGTTGTAATTTGAGGCTATACCATTAATTTCAACAAAATAATGGATAAGCTTACCAGAGTGTCTCTTTTACTCTTTATCGTACTGTAAGCAGTGTACATTCGACTCCTCTTATACTTCCTTAGAGACGATGGGGTATAGTAAATGACCTTGGAAATGAACAAGGTAGTTCTCCACCTGGCTCGACTGGACTCATTTGCATATATTCATACTTTAGTTGTCTATAAACTTCCTCCATTTCTTATTAGTTGACACAATTTGACTTCGACACTATTCATACAAGCTTTATGATTCTCTTTTGTGATTTATCTTGATAAAAAACTTAAAATCATACGGGGTCTTCTAAGATTCGTCTTAATGACTTTTTATAATCTTTTCCTATTCATAGTTGGAGATATTAATTTTTGAAATCGGATATTGGCAAACGTGCCTAAAGGATTGTGTCAACTGGAAAAGAATGGGGGAAGTATTTAGTTGTGGTTGAAACATTTATCAATATAAAGTATGTGAAATACCTCTGATTAACATCGAATAACGACCTCTGAAGTGTGAACTCTTCCCGTTCCCAAGGTGTTTTGCTCTTTGCTTTTTCTTCAAGTACTTAGGAATTAGGAATGCATTTTGAAAGCTGAAACAAATTCAAGTACTTAGGAATGCATTTTGAAAGCTGAAATGATATTTTAATTTGATTTGTCCAAATTGTATGTCATCGTTGTGTGAATTTAATTATTGATTAAGGAAGTCTTTTTTTTTTTTNGTCCAAATTGTATGTCATCGTTGTGTGAATTTAATTATTGATTAAGGAAGTCTTTTTTTTTTTTTGACGGGATTAAGGAAGTCATATATACATACATGTNGTCCAAATTGTATGTCATCGTTGTGTGAATTTAATTATTGATTAAGGAAGTCTTTTTTTTTTTTGACGGGATTAAGGAAGTCATATATACATACATGTCGGCTTTCTGCTGAAGTTTAGAATAGCAGGGTTATCTAGTTATTCTTGTCAATGATGAATGATACTTGGGTATCAATGANGTTTAGAATAGCAGGGTTATCTAGTTATTCTTGTCAATGATGAATGATACTTGGGTATCAATGACATTCATATTAGTTCCCATCGCTTTTTAGGAACTAATGCTTTATCTCTGATCAACCTGTAAAGCTTAAAAATTCAAGTCAAAATTGGATATCTCTGGCCATTCTTGTTTTCTAGAATATGGTCTCTTTTTTTAGTACTAATTAAGAGCACCTGAGTTGTGTAATGAAGACATTAGCAAGAAGGTAGTTTTCTTTCATGCATTATTTCCTTTAATGCTTGCATTTGTTTCTTAATGCTATGGTATTGATTTCTTTCCTTGCGACATGAGTATTTTAAGGAACAACTGCTTAGTTATTCAGATAGAATAAACAAAGAAAATCTCACATGCTTGTTTCCGTGTGATCTGATTTGATCCTAACTTCTACACCGAGCTTCTATAGTTCTATACCCTGGTTATGCACTCATTTATGTATTGAAATTCCAGTTTTGCAGTAATTATGTTGTCTAATGTATGAGGCTTTTAGTAATCTGAAAATTCTGTCTCATGTTTAGGACCCCAACGACAAGAAAGTCATCGTATGTGACGAGTTGCTGAAGAAAATATTCGCAGGAAAGGAACGCGTGGGTTTTCTCGAGATCTCAGGATTGATCACTCCTCACTTGCTTTAG ATGGCCGGAGCACTAGGGGGTGGGATGAAAGTGGTGGTTTTAGGGGCGAAGAATTCGTCTGTATTTGGTGGTTTTCCGGTGAATAATCCGTCGACAGTGGTGTGTTTCCCGTCGGAAATTAACCGGAAATTTGGAGGAGTGGCGGCTTGTGCTACTTCGCCGCCGACAACAAGGAAGCCGAGAGGAATAATGAAGCCGAGACCAATTTCTCCTGTTCTTCAAGAACTTGTGGGTGCTCCAGAAATTTCTAGAACCCAAGCTCTTAAGGTCATCTGGGCCCACATCAAAGCCAACAATCTTCAGGACCCCAACGACAAGAAAGTCATCGTATGTGACGAGTTGCTGAAGAAAATATTCGCAGGAAAGGAACGCGTGGGTTTTCTCGAGATCTCAGGATTGATCACTCCTCACTTGCTTTAG ATGGCCGGAGCACTAGGGGGTGGGATGAAAGTGGTGGTTTTAGGGGCGAAGAATTCGTCTGTATTTGGTGGTTTTCCGGTGAATAATCCGTCGACAGTGGTGTGTTTCCCGTCGGAAATTAACCGGAAATTTGGAGGAGTGGCGGCTTGTGCTACTTCGCCGCCGACAACAAGGAAGCCGAGAGGAATAATGAAGCCGAGACCAATTTCTCCTGTTCTTCAAGAACTTGTGGGTGCTCCAGAAATTTCTAGAACCCAAGCTCTTAAGGTCATCTGGGCCCACATCAAAGCCAACAATCTTCAGGACCCCAACGACAAGAAAGTCATCGTATGTGACGAGTTGCTGAAGAAAATATTCGCAGGAAAGGAACGCGTGGGTTTTCTCGAGATCTCAGGATTGATCACTCCTCACTTGCTTTAG MAGALGGGMKVVVLGAKNSSVFGGFPVNNPSTVVCFPSEINRKFGGVAACATSPPTTRKPRGIMKPRPISPVLQELVGAPEISRTQALKVIWAHIKANNLQDPNDKKVIVCDELLKKIFAGKERVGFLEISGLITPHLL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05748.1 vs. NCBI nr
Match: gi|902213327|gb|KNA17246.1| (hypothetical protein SOVF_081490 [Spinacia oleracea]) HSP 1 Score: 279.3 bits (713), Expect = 3.800e-72 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
BLAST of Spo05748.1 vs. NCBI nr
Match: gi|731337032|ref|XP_010679574.1| (PREDICTED: upstream activation factor subunit UAF30 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 223.8 bits (569), Expect = 1.900e-55 Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 1
BLAST of Spo05748.1 vs. NCBI nr
Match: gi|658057342|ref|XP_008364448.1| (PREDICTED: uncharacterized protein LOC103428126 [Malus domestica]) HSP 1 Score: 146.7 bits (369), Expect = 2.900e-32 Identity = 77/124 (62.10%), Postives = 94/124 (75.81%), Query Frame = 1
BLAST of Spo05748.1 vs. NCBI nr
Match: gi|595793657|ref|XP_007200577.1| (hypothetical protein PRUPE_ppa013038mg [Prunus persica]) HSP 1 Score: 143.7 bits (361), Expect = 2.500e-31 Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 1
BLAST of Spo05748.1 vs. NCBI nr
Match: gi|658061265|ref|XP_008366495.1| (PREDICTED: uncharacterized protein LOC103430142 [Malus domestica]) HSP 1 Score: 142.9 bits (359), Expect = 4.200e-31 Identity = 75/123 (60.98%), Postives = 93/123 (75.61%), Query Frame = 1
BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCL4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_081490 PE=4 SV=1) HSP 1 Score: 279.3 bits (713), Expect = 2.600e-72 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1
BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCU7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127680 PE=4 SV=1) HSP 1 Score: 223.8 bits (569), Expect = 1.300e-55 Identity = 118/142 (83.10%), Postives = 125/142 (88.03%), Query Frame = 1
BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: M5VLL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013038mg PE=4 SV=1) HSP 1 Score: 143.7 bits (361), Expect = 1.700e-31 Identity = 70/105 (66.67%), Postives = 84/105 (80.00%), Query Frame = 1
BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: A0A059BD90_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G01289 PE=4 SV=1) HSP 1 Score: 136.7 bits (343), Expect = 2.100e-29 Identity = 65/89 (73.03%), Postives = 77/89 (86.52%), Query Frame = 1
BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Match: B9HS93_POPTR (SWIB complex BAF60b domain-containing family protein OS=Populus trichocarpa GN=POPTR_0009s09520g PE=4 SV=1) HSP 1 Score: 136.3 bits (342), Expect = 2.800e-29 Identity = 62/93 (66.67%), Postives = 78/93 (83.87%), Query Frame = 1
BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: UAF30_SCHPO (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=spp27 PE=1 SV=1) HSP 1 Score: 67.0 bits (162), Expect = 1.800e-10 Identity = 28/55 (50.91%), Postives = 41/55 (74.55%), Query Frame = 1
BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: TRI1_YEAST (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRI1 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 4.500e-9 Identity = 30/70 (42.86%), Postives = 50/70 (71.43%), Query Frame = 1
BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: UAF30_YEAST (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=UAF30 PE=1 SV=1) HSP 1 Score: 60.5 bits (145), Expect = 1.700e-8 Identity = 35/101 (34.65%), Postives = 59/101 (58.42%), Query Frame = 1
BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Match: SNF12_ARATH (SWI/SNF complex component SNF12 homolog OS=Arabidopsis thaliana GN=At5g14170 PE=1 SV=1) HSP 1 Score: 53.1 bits (126), Expect = 2.800e-6 Identity = 25/70 (35.71%), Postives = 42/70 (60.00%), Query Frame = 1
BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein) HSP 1 Score: 127.5 bits (319), Expect = 6.500e-30 Identity = 64/96 (66.67%), Postives = 77/96 (80.21%), Query Frame = 1
BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein) HSP 1 Score: 119.4 bits (298), Expect = 1.800e-27 Identity = 59/95 (62.11%), Postives = 75/95 (78.95%), Query Frame = 1
BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein) HSP 1 Score: 97.4 bits (241), Expect = 7.200e-21 Identity = 47/87 (54.02%), Postives = 63/87 (72.41%), Query Frame = 1
BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein) HSP 1 Score: 94.4 bits (233), Expect = 6.100e-20 Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1
BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein) HSP 1 Score: 82.0 bits (201), Expect = 3.100e-16 Identity = 43/104 (41.35%), Postives = 61/104 (58.65%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05748.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05748.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05748.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 4 Position : 0 Zoom : x 1
BLAST of Spo05748.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|