Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.TCCCTGATAAATCTCAGTTGCTCATTTGCATTAGCTTGCTTCTTGATGAGTCCATTTGTTTTATACTTATTTGTTTTTTATTTTTCCTTTACAAGTGCCTTTCAAATCTAGTTAGTAATTAAATTTATCAACTATCTGCAGATTATGCTTGCGGATACCTGCTCTGATCTTCACAAAAGTGTTGGCGAGGACTTTTGGGTGTCTACATGGTGCAGAAGTATGGCATCTGAGGGGTAAGTATTTGCTTGAGATTTTTCTAAAATATGGCTTTAGCACGATTTTATGTGTATGAAGTACCTCCGAAAATGAAAAAAAAAAAACATTATCCTTTCTTCTTGTTATCTTCTTTGATATTGTAGTCATGTAGGCTGGGATTACTCTAGTAGTTGAATTCATGGTTAATAAACTGACTACTTGTTGTTTGGCTCTCTCAGCAAGCAGTTGGAGGGGACAAGAATCACCCTTCTGAAATCGTATGATTTAAGTTCTTTGATTTGCGTGATTAGTCTGGCATATTTGGTTTTCCATTTTCCTAAATATCCTTCTGCCAACACTTATTATGGCTTTCTGCAATTTCTTTTTAGGGGAGAACGTGGATTTGATTTTGCCATAAGAACGCCTTGTACACCTTCTAGATGGAATGAGTTTGATATTGAAATGGCAACAGCATGGGAGGTTTGTGCATAAATTGTTGTTTGCTCCTGACATTTGTGCTTTCTGTTTCTTCCTGGTTCAATATTTCTTTTGGATTTGTTTGTATTATATTTCTAAAGCTGTTAGTTATCTATAGTTCTGGAACGCAAATTTTACTGCATCTTATTTTTTGTAGTTCAACGTAAAGATGTTAATTTGATATTTGAACTTTGAACCTTGATCGGAGGCTTTTGATATCCTAAGATATGAATATTGTTACCTGTAATAAGTATTCTTTCCAGGGTGCAATCTAGAGAACTTGAACCAGTAAACCTCTTCACAGAGATCTTTTTCCAAGAAAAATATACTTTCGTATTTCTTTTTTCAATCATCTGCTTTCCTACTTGTGAAGTTGTGTAAAGAAGATTTTTTTTTCTATTGAGATGCCGGATACGTTGTTGTGTAATTCTTTGAAGTGAAACATACTATTCAGGCTATGATTTGGAAAGAAAGTTTATATTCTCTGCTTCATTTGGGTGTCGGACAATTTGGCATACATATCAACGCTCAATATTTGGTCTTATCATGTATTTTGCTAGATTTAGAGACATAAGATCCAACCTAGTCGTTTTTCCTTGGAAAAAATAAATGTGGTGTACTATTTAAATCTATCTTGCTGGTTAACATTCAGCGCATAACAATGTTTTTATATCGTGTTTTCACCTTTTTCAAGACTGATAGAATCAGAAACTGCATTTGTTGCTTCTATGTTTCCTGATGTAAAGGATCTATTGTGTTTGTAGGCTCTGTGCAATGCTTATTGTGGGGAGGCTTATGGGTCTTCTGATTTCAATGCCCTTGAAAATGTGAGAGATGCAATTTTAAGGATGACATACTACTGGTATGACAGCTTTAATCACTTGCTTCCATTTTGCTTGTTCAGATTGTGGTAGTGGTGATGATTTTATCTTTTGTTGTATAGCACATTGTAATTTTAGTTCCTGATTGTGTAAAGGTTTTTAGATTAGTCTGTGTACTGTCTGTTATGTTGAGATGTTGGACTTTGTTTTTCGCTTATTGATCTTTTTCGTTAGTTTGTAGATTAATTTTAGTTTGGGGTGCTTTCAGCTACCCTGGTATTATTCTTCTTAGGTAGATTTGAGAGGCTGACATACATTGCATAGTTGACTTCCCCCTGTTAAGGGTTAGGAGAAGACTTATTCGGCTAGGTCTGGGTTAAGTTTTGTTTGCCTTGACAGGACTAGGGCTTGGGTGTTCGTGCACTCCTATGCTATTACCTTCCTCACAGCTGTTTGCCTGTTTGGATGATTTAGGTTGGGCATCTTTACACTGAAAACATTTTACACCAAACCAAACGTAGTCTAGATGTATGTGATGTTGCCTTCTGCTGAAAGGATTGTGCATACAAATCTACTACTCAGGTCCATGCCTAAAGGAAACTTCATCTTTGACCTTCTCGTAGATTGTGGATATTAAGAAATACCCATTTAACCCCTTCAATATGTCTTTCTCGAAACTCATGTCGTACTCGTAAGATCCCAGGTTAAAATTTTGGTACATGATTATAAGATGAAACTCTCTAAGTTTACCACCCTTATAAAGTTTCTCGGAACTCATGTCGTGCTCTTAAAGTTTATTTTCCCTTTAAACAACTCCTGAAGTAGTAATATTTTGGACAAGTGAGTAATCAATCTGAGACGATGTATCTAATAGGGAGTTCTTGGCTCGATTTGATATGACTTTGCAGGTATAATTTCATGCCACTATCCAGAGGTTCTGCTGTGGTCGGGTTTGTAGTTTTGCTTGGATTGTGTCTTGCAGCAAATATGGAGTTCACTGAGAATGTTCCAGAAGGATTGCAAGTTGACTGGGAAGCTATTCTTACTTTCGATCCTGACTCCTTTATGGAGTCTGTGAAGAAATGGTTGTATCCAAATCTTAAGGTGACAACATCTTGGAAAGACTACCCAGATGTTGCATCAACCCTTTCAACTACTGGATCCGTCATTGCTGCTCTCAGCACTTACAACAACTGA TCCCTGATAAATCTCAGTTGCTCATTTGCATTAGCTTGCTTCTTGATGAGTCCATTTGTTTTATACTTATTTGTTTTTTATTTTTCCTTTACAAGTGCCTTTCAAATCTAGTTAGTAATTAAATTTATCAACTATCTGCAGATTATGCTTGCGGATACCTGCTCTGATCTTCACAAAAGTGTTGGCGAGGACTTTTGGGTGTCTACATGGTGCAGAAGTATGGCATCTGAGGGGGGAGAACGTGGATTTGATTTTGCCATAAGAACGCCTTGTACACCTTCTAGATGGAATGAGTTTGATATTGAAATGGCAACAGCATGGGAGGCTCTGTGCAATGCTTATTGTGGGGAGGCTTATGGGTCTTCTGATTTCAATGCCCTTGAAAATGTGAGAGATGCAATTTTAAGGATGACATACTACTGCTACCCTGGTATTATTCTTCTTAGGTATAATTTCATGCCACTATCCAGAGGTTCTGCTGTGGTCGGGTTTGTAGTTTTGCTTGGATTGTGTCTTGCAGCAAATATGGAGTTCACTGAGAATGTTCCAGAAGGATTGCAAGTTGACTGGGAAGCTATTCTTACTTTCGATCCTGACTCCTTTATGGAGTCTGTGAAGAAATGGTTGTATCCAAATCTTAAGGTGACAACATCTTGGAAAGACTACCCAGATGTTGCATCAACCCTTTCAACTACTGGATCCGTCATTGCTGCTCTCAGCACTTACAACAACTGA ATGCTTGCGGATACCTGCTCTGATCTTCACAAAAGTGTTGGCGAGGACTTTTGGGTGTCTACATGGTGCAGAAGTATGGCATCTGAGGGGGGAGAACGTGGATTTGATTTTGCCATAAGAACGCCTTGTACACCTTCTAGATGGAATGAGTTTGATATTGAAATGGCAACAGCATGGGAGGCTCTGTGCAATGCTTATTGTGGGGAGGCTTATGGGTCTTCTGATTTCAATGCCCTTGAAAATGTGAGAGATGCAATTTTAAGGATGACATACTACTGCTACCCTGGTATTATTCTTCTTAGGTATAATTTCATGCCACTATCCAGAGGTTCTGCTGTGGTCGGGTTTGTAGTTTTGCTTGGATTGTGTCTTGCAGCAAATATGGAGTTCACTGAGAATGTTCCAGAAGGATTGCAAGTTGACTGGGAAGCTATTCTTACTTTCGATCCTGACTCCTTTATGGAGTCTGTGAAGAAATGGTTGTATCCAAATCTTAAGGTGACAACATCTTGGAAAGACTACCCAGATGTTGCATCAACCCTTTCAACTACTGGATCCGTCATTGCTGCTCTCAGCACTTACAACAACTGA MLADTCSDLHKSVGEDFWVSTWCRSMASEGGERGFDFAIRTPCTPSRWNEFDIEMATAWEALCNAYCGEAYGSSDFNALENVRDAILRMTYYCYPGIILLRYNFMPLSRGSAVVGFVVLLGLCLAANMEFTENVPEGLQVDWEAILTFDPDSFMESVKKWLYPNLKVTTSWKDYPDVASTLSTTGSVIAALSTYNN Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05753.1 vs. NCBI nr
Match: gi|902213325|gb|KNA17244.1| (hypothetical protein SOVF_081470, partial [Spinacia oleracea]) HSP 1 Score: 375.9 bits (964), Expect = 4.200e-101 Identity = 186/209 (89.00%), Postives = 187/209 (89.47%), Query Frame = 1
BLAST of Spo05753.1 vs. NCBI nr
Match: gi|731337036|ref|XP_010679576.1| (PREDICTED: suppressor of RPS4-RLD 1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 343.6 bits (880), Expect = 2.300e-91 Identity = 165/209 (78.95%), Postives = 179/209 (85.65%), Query Frame = 1
BLAST of Spo05753.1 vs. NCBI nr
Match: gi|802645495|ref|XP_012079354.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X2 [Jatropha curcas]) HSP 1 Score: 302.0 bits (772), Expect = 7.700e-79 Identity = 144/209 (68.90%), Postives = 166/209 (79.43%), Query Frame = 1
BLAST of Spo05753.1 vs. NCBI nr
Match: gi|802645491|ref|XP_012079353.1| (PREDICTED: suppressor of RPS4-RLD 1 isoform X1 [Jatropha curcas]) HSP 1 Score: 302.0 bits (772), Expect = 7.700e-79 Identity = 144/209 (68.90%), Postives = 166/209 (79.43%), Query Frame = 1
BLAST of Spo05753.1 vs. NCBI nr
Match: gi|449448472|ref|XP_004141990.1| (PREDICTED: suppressor of RPS4-RLD 1 [Cucumis sativus]) HSP 1 Score: 301.2 bits (770), Expect = 1.300e-78 Identity = 145/209 (69.38%), Postives = 165/209 (78.95%), Query Frame = 1
BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RE25_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_081470 PE=4 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 2.900e-101 Identity = 186/209 (89.00%), Postives = 187/209 (89.47%), Query Frame = 1
BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C7V6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g127700 PE=4 SV=1) HSP 1 Score: 343.6 bits (880), Expect = 1.600e-91 Identity = 165/209 (78.95%), Postives = 179/209 (85.65%), Query Frame = 1
BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A067KJM3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12495 PE=4 SV=1) HSP 1 Score: 302.0 bits (772), Expect = 5.300e-79 Identity = 144/209 (68.90%), Postives = 166/209 (79.43%), Query Frame = 1
BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KIG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G493870 PE=4 SV=1) HSP 1 Score: 301.2 bits (770), Expect = 9.100e-79 Identity = 145/209 (69.38%), Postives = 165/209 (78.95%), Query Frame = 1
BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Match: A0A061DNS7_THECC (Tetratricopeptide repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_000742 PE=4 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 3.500e-78 Identity = 142/207 (68.60%), Postives = 168/207 (81.16%), Query Frame = 1
BLAST of Spo05753.1 vs. ExPASy Swiss-Prot
Match: SRFR1_ARATH (Suppressor of RPS4-RLD 1 OS=Arabidopsis thaliana GN=SRFR1 PE=1 SV=1) HSP 1 Score: 281.2 bits (718), Expect = 8.800e-75 Identity = 131/210 (62.38%), Postives = 161/210 (76.67%), Query Frame = 1
BLAST of Spo05753.1 vs. ExPASy Swiss-Prot
Match: TTC13_HUMAN (Tetratricopeptide repeat protein 13 OS=Homo sapiens GN=TTC13 PE=2 SV=3) HSP 1 Score: 77.4 bits (189), Expect = 1.900e-13 Identity = 51/158 (32.28%), Postives = 82/158 (51.90%), Query Frame = 1
BLAST of Spo05753.1 vs. TAIR (Arabidopsis)
Match: AT4G37460.1 (Tetratricopeptide repeat (TPR)-like superfamily protein) HSP 1 Score: 281.2 bits (718), Expect = 4.900e-76 Identity = 131/210 (62.38%), Postives = 161/210 (76.67%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05753.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05753.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05753.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2 Position : 0 Zoom : x 1
BLAST of Spo05753.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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