Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATCAAAATAATGAAGGGGGAATGAAAGTGGAAATTCCAGAAATGAATTTTACAAGTCCTAGAGGTTTAACAAGGCAACCAAGCAATGGAAGTGCAAAAGTGTTGAGCACTTGCCTTTGTTCTCCGACCACACATGCCGGCTCTTTTAGATGCCGGCTTCACCGAGCCCCGAGCCTCCAACGTACGAGGAGCGTTGACCATTCGGCGTCCACCAAGCCGGAAAATGCTAGTGTTACTACTAGTGACTACTAA ATGGATCAAAATAATGAAGGGGGAATGAAAGTGGAAATTCCAGAAATGAATTTTACAAGTCCTAGAGGTTTAACAAGGCAACCAAGCAATGGAAGTGCAAAAGTGTTGAGCACTTGCCTTTGTTCTCCGACCACACATGCCGGCTCTTTTAGATGCCGGCTTCACCGAGCCCCGAGCCTCCAACGTACGAGGAGCGTTGACCATTCGGCGTCCACCAAGCCGGAAAATGCTAGTGTTACTACTAGTGACTACTAA ATGGATCAAAATAATGAAGGGGGAATGAAAGTGGAAATTCCAGAAATGAATTTTACAAGTCCTAGAGGTTTAACAAGGCAACCAAGCAATGGAAGTGCAAAAGTGTTGAGCACTTGCCTTTGTTCTCCGACCACACATGCCGGCTCTTTTAGATGCCGGCTTCACCGAGCCCCGAGCCTCCAACGTACGAGGAGCGTTGACCATTCGGCGTCCACCAAGCCGGAAAATGCTAGTGTTACTACTAGTGACTACTAA MDQNNEGGMKVEIPEMNFTSPRGLTRQPSNGSAKVLSTCLCSPTTHAGSFRCRLHRAPSLQRTRSVDHSASTKPENASVTTSDY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05816.1 vs. NCBI nr
Match: gi|902194234|gb|KNA12491.1| (hypothetical protein SOVF_125220 [Spinacia oleracea]) HSP 1 Score: 170.6 bits (431), Expect = 1.100e-39 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
BLAST of Spo05816.1 vs. NCBI nr
Match: gi|870856020|gb|KMT07723.1| (hypothetical protein BVRB_6g148430 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 115.9 bits (289), Expect = 3.300e-23 Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 1
BLAST of Spo05816.1 vs. NCBI nr
Match: gi|641863537|gb|KDO82223.1| (hypothetical protein CISIN_1g034545mg [Citrus sinensis]) HSP 1 Score: 82.4 bits (202), Expect = 4.100e-13 Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1
BLAST of Spo05816.1 vs. NCBI nr
Match: gi|567891475|ref|XP_006438258.1| (hypothetical protein CICLE_v10033189mg [Citrus clementina]) HSP 1 Score: 81.6 bits (200), Expect = 7.000e-13 Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1
BLAST of Spo05816.1 vs. NCBI nr
Match: gi|702440012|ref|XP_010023468.1| (PREDICTED: uncharacterized protein LOC104414138 [Eucalyptus grandis]) HSP 1 Score: 78.6 bits (192), Expect = 5.900e-12 Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1
BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R105_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_125220 PE=4 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 8.000e-40 Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 1
BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C6Q3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g148430 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 2.300e-23 Identity = 60/82 (73.17%), Postives = 72/82 (87.80%), Query Frame = 1
BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A067GRK1_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g034545mg PE=4 SV=1) HSP 1 Score: 82.4 bits (202), Expect = 2.900e-13 Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1
BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: V4SUF8_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033189mg PE=4 SV=1) HSP 1 Score: 81.6 bits (200), Expect = 4.900e-13 Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 1
BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Match: A0A059B1G2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H02494 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 4.100e-12 Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1
BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Match: AT1G67910.1 (unknown protein) HSP 1 Score: 65.5 bits (158), Expect = 1.800e-11 Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1
BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Match: AT1G24577.1 (unknown protein) HSP 1 Score: 57.0 bits (136), Expect = 6.500e-9 Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1
BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Match: AT5G55980.1 (serine-rich protein-related) HSP 1 Score: 51.2 bits (121), Expect = 3.600e-7 Identity = 32/77 (41.56%), Postives = 38/77 (49.35%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05816.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05816.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05816.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo05816.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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