Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTAGGCTTTTGCGAGAACTGATTCGAAAGCCATCAACTTCTAGCAGATTCATTGCGACATTGTCCCATCAAAACCCCACTAATCTCTCTCCTTCATTGCTGTTTAACCAGTCAATTCTTTTCGGTAAAACCAATTTTGACAATGGAGGTGGGTTAAACCCTAGCAGCAACCAGGGTTTAGCAGAAGCGACCCATTTCAGCAAATCGCAGATTTATCCGAGTTTCTCACTTGGGTATTTCTTGGACCCGATTTCGCCACCTGGTCTGGTATCTGAGCCCGAAGTGGAGGATCGGGGAATGATGTGGGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCATAAGTATAAGAAGCTCAGGAAACGTCTTCGTCGAAAGACCAAGACTTGA ATGGCTAGGCTTTTGCGAGAACTGATTCGAAAGCCATCAACTTCTAGCAGATTCATTGCGACATTGTCCCATCAAAACCCCACTAATCTCTCTCCTTCATTGCTGTTTAACCAGTCAATTCTTTTCGGTAAAACCAATTTTGACAATGGAGGTGGGTTAAACCCTAGCAGCAACCAGGGTTTAGCAGAAGCGACCCATTTCAGCAAATCGCAGATTTATCCGAGTTTCTCACTTGGGTATTTCTTGGACCCGATTTCGCCACCTGGTCTGGTATCTGAGCCCGAAGTGGAGGATCGGGGAATGATGTGGGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCATAAGTATAAGAAGCTCAGGAAACGTCTTCGTCGAAAGACCAAGACTTGA ATGGCTAGGCTTTTGCGAGAACTGATTCGAAAGCCATCAACTTCTAGCAGATTCATTGCGACATTGTCCCATCAAAACCCCACTAATCTCTCTCCTTCATTGCTGTTTAACCAGTCAATTCTTTTCGGTAAAACCAATTTTGACAATGGAGGTGGGTTAAACCCTAGCAGCAACCAGGGTTTAGCAGAAGCGACCCATTTCAGCAAATCGCAGATTTATCCGAGTTTCTCACTTGGGTATTTCTTGGACCCGATTTCGCCACCTGGTCTGGTATCTGAGCCCGAAGTGGAGGATCGGGGAATGATGTGGGCTGATAGTGTGAAGAAGAAGAGGAAGAAGAAGATGAACAAGCATAAGTATAAGAAGCTCAGGAAACGTCTTCGTCGAAAGACCAAGACTTGA MARLLRELIRKPSTSSRFIATLSHQNPTNLSPSLLFNQSILFGKTNFDNGGGLNPSSNQGLAEATHFSKSQIYPSFSLGYFLDPISPPGLVSEPEVEDRGMMWADSVKKKRKKKMNKHKYKKLRKRLRRKTKT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05841.1 vs. NCBI nr
Match: gi|902229474|gb|KNA21519.1| (hypothetical protein SOVF_042460 [Spinacia oleracea]) HSP 1 Score: 252.7 bits (644), Expect = 3.600e-64 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
BLAST of Spo05841.1 vs. NCBI nr
Match: gi|870840654|gb|KMS94874.1| (hypothetical protein BVRB_014490 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 156.4 bits (394), Expect = 3.500e-35 Identity = 97/137 (70.80%), Postives = 106/137 (77.37%), Query Frame = 1
BLAST of Spo05841.1 vs. NCBI nr
Match: gi|147788256|emb|CAN67397.1| (hypothetical protein VITISV_022672 [Vitis vinifera]) HSP 1 Score: 96.7 bits (239), Expect = 3.300e-17 Identity = 68/139 (48.92%), Postives = 84/139 (60.43%), Query Frame = 1
BLAST of Spo05841.1 vs. NCBI nr
Match: gi|731372733|ref|XP_010650803.1| (PREDICTED: uncharacterized protein LOC104879512 [Vitis vinifera]) HSP 1 Score: 89.0 bits (219), Expect = 6.900e-15 Identity = 67/140 (47.86%), Postives = 83/140 (59.29%), Query Frame = 1
BLAST of Spo05841.1 vs. NCBI nr
Match: gi|659098254|ref|XP_008450047.1| (PREDICTED: uncharacterized protein LOC103491757 [Cucumis melo]) HSP 1 Score: 87.0 bits (214), Expect = 2.600e-14 Identity = 68/136 (50.00%), Postives = 85/136 (62.50%), Query Frame = 1
BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRI0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042460 PE=4 SV=1) HSP 1 Score: 252.7 bits (644), Expect = 2.500e-64 Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 1
BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B1H8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_014490 PE=4 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.500e-35 Identity = 97/137 (70.80%), Postives = 106/137 (77.37%), Query Frame = 1
BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A5B1K2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022672 PE=4 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 2.300e-17 Identity = 68/139 (48.92%), Postives = 84/139 (60.43%), Query Frame = 1
BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A5C4N9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0137g00370 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 4.800e-15 Identity = 67/140 (47.86%), Postives = 83/140 (59.29%), Query Frame = 1
BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Match: A0A0A0LDP0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G592160 PE=4 SV=1) HSP 1 Score: 84.3 bits (207), Expect = 1.200e-13 Identity = 68/142 (47.89%), Postives = 82/142 (57.75%), Query Frame = 1
BLAST of Spo05841.1 vs. TAIR (Arabidopsis)
Match: AT5G63150.1 (unknown protein) HSP 1 Score: 52.8 bits (125), Expect = 1.900e-7 Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05841.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05841.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05841.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo05841.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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