Spo05850 (gene) | SpinachBase

Overview


Name	Spo05850
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Photosystem II core complex proteins psbY
Location	chr1 : 49544923 .. 49545522 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCAACAATGGCAACAACAATGGCAGTACTCAACACAAAATGCTTAACTCTCAACACCAACAAAACAACAAGCCCATCACCAAAGCCCACTTCCAAGCCCATCTCACTCTCACCACTAGGCCTTTCAAACTCAAAGCTACCAATGGGCTTAAGCCCAATAATCACCGCCCCAGCAATCGCCGGAGCAGTTTTCGCCACCTTGGGCTCAGTGGACCCAGCTTTAGCAGTCCAACAACTAGCTGACATCGCTGCTGAGGCCGGAACTAGTGACAACCGTGGGCTGGCCCTTTTGCTACCCATTATCCCAGCTCTCGGGTGGGTTCTTTTCAACATATTACAACCCGCTTTGAACCAGATCAACAAGATGAGGAATGAGAAGAAGGCTTTTATTGTTGGGCTTGGGCTAAGTGGGCTTGCAACAAGTGGGCTTTTGTTAGCAACACCAGAGGCCCAAGCAGCAAGTGAGGAGATTGCTAGGGGTAGTGATAATAGAGGGACATTGTTGTTGTTAGTTGTGTTGCCTGCTATTGGTTGGGTTCTTTTCAATATTTTGCAGCCTGCTTTGAACCAACTTAACAAGATGAGGTCTCAATAA

mRNA sequence

ATGGCAGCAACAATGGCAACAACAATGGCAGTACTCAACACAAAATGCTTAACTCTCAACACCAACAAAACAACAAGCCCATCACCAAAGCCCACTTCCAAGCCCATCTCACTCTCACCACTAGGCCTTTCAAACTCAAAGCTACCAATGGGCTTAAGCCCAATAATCACCGCCCCAGCAATCGCCGGAGCAGTTTTCGCCACCTTGGGCTCAGTGGACCCAGCTTTAGCAGTCCAACAACTAGCTGACATCGCTGCTGAGGCCGGAACTAGTGACAACCGTGGGCTGGCCCTTTTGCTACCCATTATCCCAGCTCTCGGGTGGGTTCTTTTCAACATATTACAACCCGCTTTGAACCAGATCAACAAGATGAGGAATGAGAAGAAGGCTTTTATTGTTGGGCTTGGGCTAAGTGGGCTTGCAACAAGTGGGCTTTTGTTAGCAACACCAGAGGCCCAAGCAGCAAGTGAGGAGATTGCTAGGGGTAGTGATAATAGAGGGACATTGTTGTTGTTAGTTGTGTTGCCTGCTATTGGTTGGGTTCTTTTCAATATTTTGCAGCCTGCTTTGAACCAACTTAACAAGATGAGGTCTCAATAA

Coding sequence (CDS)

ATGGCAGCAACAATGGCAACAACAATGGCAGTACTCAACACAAAATGCTTAACTCTCAACACCAACAAAACAACAAGCCCATCACCAAAGCCCACTTCCAAGCCCATCTCACTCTCACCACTAGGCCTTTCAAACTCAAAGCTACCAATGGGCTTAAGCCCAATAATCACCGCCCCAGCAATCGCCGGAGCAGTTTTCGCCACCTTGGGCTCAGTGGACCCAGCTTTAGCAGTCCAACAACTAGCTGACATCGCTGCTGAGGCCGGAACTAGTGACAACCGTGGGCTGGCCCTTTTGCTACCCATTATCCCAGCTCTCGGGTGGGTTCTTTTCAACATATTACAACCCGCTTTGAACCAGATCAACAAGATGAGGAATGAGAAGAAGGCTTTTATTGTTGGGCTTGGGCTAAGTGGGCTTGCAACAAGTGGGCTTTTGTTAGCAACACCAGAGGCCCAAGCAGCAAGTGAGGAGATTGCTAGGGGTAGTGATAATAGAGGGACATTGTTGTTGTTAGTTGTGTTGCCTGCTATTGGTTGGGTTCTTTTCAATATTTTGCAGCCTGCTTTGAACCAACTTAACAAGATGAGGTCTCAATAA

Protein sequence

MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05850.1	Spo05850.1	mRNA

Homology

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BLAST of Spo05850.1 vs. NCBI nr
Match: gi|6093830|sp|P80470.2|PSBY_SPIOL (RecName: Full=Photosystem II core complex proteins psbY, chloroplastic; AltName: Full=L-arginine-metabolizing enzyme; Short=L-AME; Contains: RecName: Full=Photosystem II protein psbY-1, chloroplastic; AltName: Full=psbY-A1; Contains: RecName: Full=Photosystem II protein psbY-2, chloroplastic; AltName: Full=psbY-A2; Flags: Precursor [Spinacia oleracea])

HSP 1 Score: 362.8 bits (930), Expect = 3.700e-97
Identity = 197/199 (98.99%), Postives = 197/199 (98.99%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60
           MAATMATTMAVLNTKCLTLNTNKTTS SPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120
           IAGAVFATLGSVDPA AVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180
           INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

Query: 181 VLFNILQPALNQLNKMRSQ 200
           VLFNILQPALNQLNKMRSQ
Sbjct: 181 VLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of Spo05850.1 vs. NCBI nr
Match: gi|731342378|ref|XP_010682367.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 262.7 bits (670), Expect = 5.200e-67
Identity = 163/212 (76.89%), Postives = 170/212 (80.19%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSP-KPT-SKPISLSPLGLSNSKLPMGL-----S 60
           MA T   TMAVLNTKCLTLNTNKTTS S  KPT  KPISL    LS   LP GL     S
Sbjct: 1   MATTTMATMAVLNTKCLTLNTNKTTSSSSIKPTIPKPISL----LSIQNLPKGLTSSSPS 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
           PII APA+AGA+FATLGSVDPALA QQLADIA     SDNRGLALLLPIIPA+GWVLFNI
Sbjct: 61  PIIAAPALAGAIFATLGSVDPALAAQQLADIAEG---SDNRGLALLLPIIPAIGWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIAR------GSDNRG 180
           LQPALNQINKMRNE KA IVG GLSGL ++GLL  TPEAQAASEEIA+      GSDNRG
Sbjct: 121 LQPALNQINKMRNE-KAVIVGAGLSGLTSAGLLFYTPEAQAASEEIAKIAENAGGSDNRG 180

Query: 181 TLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           TLLL VVLPAIGWVLFNILQPALNQLN+MRSQ
Sbjct: 181 TLLLFVVLPAIGWVLFNILQPALNQLNRMRSQ 204

[Close]

BLAST of Spo05850.1 vs. NCBI nr
Match: gi|224110818|ref|XP_002315645.1| (Photosystem II core complex proteins psbY [Populus trichocarpa])

HSP 1 Score: 204.5 bits (519), Expect = 1.700e-49
Identity = 130/210 (61.90%), Postives = 155/210 (73.81%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLS------- 60
           MAATMAT MA+LN KCL++N+NK  SP+ KP++KP+SL    LS   LP GL+       
Sbjct: 1   MAATMAT-MAILNAKCLSINSNKNISPT-KPSTKPVSL----LSMQNLPKGLTISKPADN 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
            ++T  AIAGA+F TL S +PA A QQ+A+IA      DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  TVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAE----GDNRGLALLLPLIPAIAWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIA----RGSDNRGTL 180
           LQPALNQIN+MR + K  IVGLGL GLA SG  ++TP A A+  EIA      SDNRGTL
Sbjct: 121 LQPALNQINRMR-QTKGVIVGLGLGGLAASG-FISTPHASAS--EIAMIADATSDNRGTL 180

Query: 181 LLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           LL+VV PAI WVL+NILQPALNQ+NKMRSQ
Sbjct: 181 LLIVVAPAILWVLYNILQPALNQINKMRSQ 196

[Close]

BLAST of Spo05850.1 vs. NCBI nr
Match: gi|743898126|ref|XP_011042352.1| (PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica])

HSP 1 Score: 203.4 bits (516), Expect = 3.800e-49
Identity = 128/210 (60.95%), Postives = 156/210 (74.29%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLS------- 60
           MAATMAT MA+LN KCL++N+NK  +P+ KP++KP+SL    LS   LP GL+       
Sbjct: 1   MAATMAT-MAILNAKCLSINSNKNINPT-KPSTKPVSL----LSMQNLPKGLTISKPADN 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
            ++T  AIAGA+F TL S +PA A QQ+A+IA      DNRG+ALLLP+IPA+ WVLFNI
Sbjct: 61  TVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAE----GDNRGIALLLPLIPAIAWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIA----RGSDNRGTL 180
           LQPALNQIN+MR + K  IVGLGL GLA SG  ++TP+A A+  EIA      SDNRGTL
Sbjct: 121 LQPALNQINRMR-QTKGVIVGLGLGGLAASG-FISTPDASAS--EIAMIADATSDNRGTL 180

Query: 181 LLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           LL+VV PAI WVL+NILQPALNQ+NKMRSQ
Sbjct: 181 LLIVVAPAILWVLYNILQPALNQINKMRSQ 196

[Close]

BLAST of Spo05850.1 vs. NCBI nr
Match: gi|118488993|gb|ABK96304.1| (unknown [Populus trichocarpa x Populus deltoides])

HSP 1 Score: 203.0 bits (515), Expect = 4.900e-49
Identity = 129/210 (61.43%), Postives = 155/210 (73.81%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLS------- 60
           MAATMAT MA+LN KCL++N+ K  SP PKP++KP+SL    LS   LP GL+       
Sbjct: 1   MAATMAT-MAILNAKCLSINSIKNISP-PKPSTKPVSL----LSMLNLPKGLTISKPADN 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
            ++T  AIAGA+F TL S +PA A QQ+A+IA      DNRG+ALLLP+IPA+ WVLFNI
Sbjct: 61  TVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAE----GDNRGIALLLPLIPAIAWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIA----RGSDNRGTL 180
           LQPALNQIN+MR + K  IVGLGL GLA SG  ++TP+A A+  EIA      SDNRGTL
Sbjct: 121 LQPALNQINRMR-QTKGVIVGLGLGGLAASG-FISTPDASAS--EIAMIAEAASDNRGTL 180

Query: 181 LLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           LL+VV PAI WVL+NILQPALNQ+NKMRSQ
Sbjct: 181 LLIVVAPAILWVLYNILQPALNQINKMRSQ 196

[Close]

BLAST of Spo05850.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QBY8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_202020 PE=3 SV=1)

HSP 1 Score: 362.8 bits (930), Expect = 2.600e-97
Identity = 197/199 (98.99%), Postives = 197/199 (98.99%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60
           MAATMATTMAVLNTKCLTLNTNKTTS SPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120
           IAGAVFATLGSVDPA AVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180
           INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

Query: 181 VLFNILQPALNQLNKMRSQ 200
           VLFNILQPALNQLNKMRSQ
Sbjct: 181 VLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of Spo05850.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1H5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g147470 PE=3 SV=1)

HSP 1 Score: 262.7 bits (670), Expect = 3.600e-67
Identity = 163/212 (76.89%), Postives = 170/212 (80.19%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSP-KPT-SKPISLSPLGLSNSKLPMGL-----S 60
           MA T   TMAVLNTKCLTLNTNKTTS S  KPT  KPISL    LS   LP GL     S
Sbjct: 1   MATTTMATMAVLNTKCLTLNTNKTTSSSSIKPTIPKPISL----LSIQNLPKGLTSSSPS 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
           PII APA+AGA+FATLGSVDPALA QQLADIA     SDNRGLALLLPIIPA+GWVLFNI
Sbjct: 61  PIIAAPALAGAIFATLGSVDPALAAQQLADIAEG---SDNRGLALLLPIIPAIGWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIAR------GSDNRG 180
           LQPALNQINKMRNE KA IVG GLSGL ++GLL  TPEAQAASEEIA+      GSDNRG
Sbjct: 121 LQPALNQINKMRNE-KAVIVGAGLSGLTSAGLLFYTPEAQAASEEIAKIAENAGGSDNRG 180

Query: 181 TLLLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           TLLL VVLPAIGWVLFNILQPALNQLN+MRSQ
Sbjct: 181 TLLLFVVLPAIGWVLFNILQPALNQLNRMRSQ 204

[Close]

BLAST of Spo05850.1 vs. UniProtKB/TrEMBL
Match: A9PJ80_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.200e-49
Identity = 130/210 (61.90%), Postives = 155/210 (73.81%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLS------- 60
           MAATMAT MA+LN KCL++N+NK  SP+ KP++KP+SL    LS   LP GL+       
Sbjct: 1   MAATMAT-MAILNAKCLSINSNKNISPT-KPSTKPVSL----LSMQNLPKGLTISKPADN 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
            ++T  AIAGA+F TL S +PA A QQ+A+IA      DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  TVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAE----GDNRGLALLLPLIPAIAWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIA----RGSDNRGTL 180
           LQPALNQIN+MR + K  IVGLGL GLA SG  ++TP A A+  EIA      SDNRGTL
Sbjct: 121 LQPALNQINRMR-QTKGVIVGLGLGGLAASG-FISTPHASAS--EIAMIADATSDNRGTL 180

Query: 181 LLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           LL+VV PAI WVL+NILQPALNQ+NKMRSQ
Sbjct: 181 LLIVVAPAILWVLYNILQPALNQINKMRSQ 196

[Close]

BLAST of Spo05850.1 vs. UniProtKB/TrEMBL
Match: B9HTF3_POPTR (Photosystem II core complex proteins psbY OS=Populus trichocarpa GN=POPTR_0010s06190g PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.200e-49
Identity = 130/210 (61.90%), Postives = 155/210 (73.81%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLS------- 60
           MAATMAT MA+LN KCL++N+NK  SP+ KP++KP+SL    LS   LP GL+       
Sbjct: 1   MAATMAT-MAILNAKCLSINSNKNISPT-KPSTKPVSL----LSMQNLPKGLTISKPADN 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
            ++T  AIAGA+F TL S +PA A QQ+A+IA      DNRGLALLLP+IPA+ WVLFNI
Sbjct: 61  TVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAE----GDNRGLALLLPLIPAIAWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIA----RGSDNRGTL 180
           LQPALNQIN+MR + K  IVGLGL GLA SG  ++TP A A+  EIA      SDNRGTL
Sbjct: 121 LQPALNQINRMR-QTKGVIVGLGLGGLAASG-FISTPHASAS--EIAMIADATSDNRGTL 180

Query: 181 LLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           LL+VV PAI WVL+NILQPALNQ+NKMRSQ
Sbjct: 181 LLIVVAPAILWVLYNILQPALNQINKMRSQ 196

[Close]

BLAST of Spo05850.1 vs. UniProtKB/TrEMBL
Match: A9PIV1_9ROSI (Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1)

HSP 1 Score: 203.0 bits (515), Expect = 3.400e-49
Identity = 129/210 (61.43%), Postives = 155/210 (73.81%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLS------- 60
           MAATMAT MA+LN KCL++N+ K  SP PKP++KP+SL    LS   LP GL+       
Sbjct: 1   MAATMAT-MAILNAKCLSINSIKNISP-PKPSTKPVSL----LSMLNLPKGLTISKPADN 60

Query: 61  PIITAPAIAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNI 120
            ++T  AIAGA+F TL S +PA A QQ+A+IA      DNRG+ALLLP+IPA+ WVLFNI
Sbjct: 61  TVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAE----GDNRGIALLLPLIPAIAWVLFNI 120

Query: 121 LQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIA----RGSDNRGTL 180
           LQPALNQIN+MR + K  IVGLGL GLA SG  ++TP+A A+  EIA      SDNRGTL
Sbjct: 121 LQPALNQINRMR-QTKGVIVGLGLGGLAASG-FISTPDASAS--EIAMIAEAASDNRGTL 180

Query: 181 LLLVVLPAIGWVLFNILQPALNQLNKMRSQ 200
           LL+VV PAI WVL+NILQPALNQ+NKMRSQ
Sbjct: 181 LLIVVAPAILWVLYNILQPALNQINKMRSQ 196

[Close]

BLAST of Spo05850.1 vs. ExPASy Swiss-Prot
Match: PSBY_SPIOL (Photosystem II core complex proteins psbY, chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2)

HSP 1 Score: 362.8 bits (930), Expect = 2.300e-99
Identity = 197/199 (98.99%), Postives = 197/199 (98.99%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60
           MAATMATTMAVLNTKCLTLNTNKTTS SPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA
Sbjct: 1   MAATMATTMAVLNTKCLTLNTNKTTSTSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60

Query: 61  IAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120
           IAGAVFATLGSVDPA AVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ
Sbjct: 61  IAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120

Query: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180
           INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW
Sbjct: 121 INKMRNEKKAFIVGLGLSGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIGW 180

Query: 181 VLFNILQPALNQLNKMRSQ 200
           VLFNILQPALNQLNKMRSQ
Sbjct: 181 VLFNILQPALNQLNKMRSQ 199

[Close]

BLAST of Spo05850.1 vs. ExPASy Swiss-Prot
Match: PSBY_ARATH (Photosystem II core complex proteins psbY, chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.500e-45
Identity = 110/199 (55.28%), Postives = 137/199 (68.84%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60
           MAA MAT      TKC++LN      PSP          P     +     +S  +T+ A
Sbjct: 1   MAAAMATA-----TKCMSLN------PSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTA 60

Query: 61  IAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120
           +AGAVF++L   +PALA+QQ+A +AA   +SDNRGLALLLPI+PA+ WVL+NILQPA+NQ
Sbjct: 61  LAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQ 120

Query: 121 INKMRNEKKAFIVGLGL-SGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIG 180
           +NKMR E K  +VGLG+  GLA SGLL   PEA AA+E  A  SD+RG LLL+VV PA+ 
Sbjct: 121 VNKMR-ESKGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALL 180

Query: 181 WVLFNILQPALNQLNKMRS 199
           WVL+NILQPALNQ+NKMRS
Sbjct: 181 WVLYNILQPALNQINKMRS 187

[Close]

BLAST of Spo05850.1 vs. TAIR (Arabidopsis)
Match: AT1G67740.1 (photosystem II BY)

HSP 1 Score: 183.3 bits (464), Expect = 1.400e-46
Identity = 110/199 (55.28%), Postives = 137/199 (68.84%), Query Frame = 1

		  
Query: 1   MAATMATTMAVLNTKCLTLNTNKTTSPSPKPTSKPISLSPLGLSNSKLPMGLSPIITAPA 60
           MAA MAT      TKC++LN      PSP          P     +     +S  +T+ A
Sbjct: 1   MAAAMATA-----TKCMSLN------PSPPKLQNQTKSKPFISLPTPPKPNVSLAVTSTA 60

Query: 61  IAGAVFATLGSVDPALAVQQLADIAAEAGTSDNRGLALLLPIIPALGWVLFNILQPALNQ 120
           +AGAVF++L   +PALA+QQ+A +AA   +SDNRGLALLLPI+PA+ WVL+NILQPA+NQ
Sbjct: 61  LAGAVFSSLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQ 120

Query: 121 INKMRNEKKAFIVGLGL-SGLATSGLLLATPEAQAASEEIARGSDNRGTLLLLVVLPAIG 180
           +NKMR E K  +VGLG+  GLA SGLL   PEA AA+E  A  SD+RG LLL+VV PA+ 
Sbjct: 121 VNKMR-ESKGIVVGLGIGGGLAASGLLTPPPEAYAAAEAAAASSDSRGQLLLIVVTPALL 180

Query: 181 WVLFNILQPALNQLNKMRS 199
           WVL+NILQPALNQ+NKMRS
Sbjct: 181 WVLYNILQPALNQINKMRS 187

The following BLAST results are available for this feature:

BLAST of Spo05850.1 vs. NCBI nr
BLAST of Spo05850.1 vs. UniProtKB/TrEMBL
BLAST of Spo05850.1 vs. ExPASy Swiss-Prot
BLAST of Spo05850.1 vs. TAIR (Arabidopsis)

BLAST of Spo05850.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|6093830\|sp\|P80470.2\|PSBY_SPIOL	3.7e-97	98.9	RecName: Full=Photosystem II c...	[more]
gi\|731342378\|ref\|XP_010682367.1\|	5.2e-67	76.8	PREDICTED: photosystem II core...	[more]
gi\|224110818\|ref\|XP_002315645.1\|	1.7e-49	61.9	Photosystem II core complex pr...	[more]
gi\|743898126\|ref\|XP_011042352.1\|	3.8e-49	60.9	PREDICTED: photosystem II core...	[more]
gi\|118488993\|gb\|ABK96304.1\|	4.9e-49	61.4	unknown [Populus trichocarpa x...	[more]

BLAST of Spo05850.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A0K9QBY8_SPIOL	2.6e-97	98.9	Uncharacterized protein OS=Spi...	[more]
A0A0J8C1H5_BETVU	3.6e-67	76.8	Uncharacterized protein OS=Bet...	[more]
A9PJ80_9ROSI	1.2e-49	61.9	Putative uncharacterized prote...	[more]
B9HTF3_POPTR	1.2e-49	61.9	Photosystem II core complex pr...	[more]
A9PIV1_9ROSI	3.4e-49	61.4	Putative uncharacterized prote...	[more]

BLAST of Spo05850.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2

Position :

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Match Name	E-value	Identity	Description
PSBY_SPIOL	2.3e-99	98.9	Photosystem II core complex pr...	[more]
PSBY_ARATH	2.5e-45	55.2	Photosystem II core complex pr...	[more]

BLAST of Spo05850.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT1G67740.1	1.4e-46	55.2	photosystem II BY	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009388	Photosystem II PsbY	HAMAP	MF_00717	PSII_PsbY	coord: 92..126 score: 11.087coord: 164..198 score: 9
IPR009388	Photosystem II PsbY	PFAM	PF06298	PsbY	coord: 92..124 score: 1.3E-15coord: 164..196 score: 1.4
None	No IPR available	PANTHER	PTHR34790	FAMILY NOT NAMED	coord: 1..199 score: 1.7

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071840	cellular component organization or biogenesis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009416	response to light stimulus
biological_process	GO:1901401	regulation of tetrapyrrole metabolic process
biological_process	GO:0019216	regulation of lipid metabolic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0031408	oxylipin biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0071704	organic substance metabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009706	chloroplast inner membrane
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0030145	manganese ion binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0048529	magnesium-protoporphyrin IX monomethyl ester (oxidative) cyclase activity
molecular_function	GO:0046914	transition metal ion binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15619	0.67	Barchart \| Table
Spo00803	0.66	Barchart \| Table
Spo04153	0.65	Barchart \| Table