Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCATTTAGCAGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGTCATCAAATCCATGTATCTTTACCGATTAACCAATTTCTAAATGCTGGAGTAGATCCTAAAGAGATACCGCTTCCTCATGAATTTATCTTGAATCGGGATCTTTTGGCTCAACTTTATGGCTAGTAGTGGAGTAGTGGGAGGTTACCACGTTTACTGGGTAATTAATGGGTAGTTAAAATGACATTTAGAGGGGTTAATGAACCGCAACTCTGCAAGTACCAAGTACCAAGGCCCACGGCCCGCGTGCGCGTATGTGTTGTGTGTCCACCCATGCCACTCACATGCTTTCTTAAGCAAATGTTTCCCTCAAGTCCCCAAATATAAACATTGAAAGTAGTTGGTGTTTTTCAATGTGGGACTTTTCACCTTCCCACTTTTCCCCACTCATTTTCTTTTGTATTCTCACTGGGACTTCCTAAACATATTTTGCAGTTTTTGCAAGAGCGCGCTGCTTGAATTCTGCAGCAGATAAATGTGGCAACAGATGTCCAGAATGCAGGCATCTAATACCAATCAGGTAATAAATAATAATAACCCAAATTAGCAGTTAAAACTAAATTAATGTCAGGAATTGTTTTATGCATACAAATATGCAATAGTTGATGATTTTTTGTGTGTGCAGGAATTGCACTATAAACACAGGGCTTTGGAACACCATACAGCTTCTATTCCCAGCCGAAATCGGGCCGATGGTAGCAGCTGCAACGTCGAGCAGTACAGCAGCTGA ATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCATTTAGCAGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGTCATCAAATCCATGAATTGCACTATAAACACAGGGCTTTGGAACACCATACAGCTTCTATTCCCAGCCGAAATCGGGCCGATGGTAGCAGCTGCAACGTCGAGCAGTACAGCAGCTGA ATGCTTTTTGCTGGTTGGTTCCATTATCACAAAGCGGCTCCAAAATTAGCTTGGTTCCAAGATGTGGAATCTATGTTGAATCACCATTTAGCAGGACTACTAGGACTTGGGTCTCTTTCTTGGGCGGGTCATCAAATCCATGAATTGCACTATAAACACAGGGCTTTGGAACACCATACAGCTTCTATTCCCAGCCGAAATCGGGCCGATGGTAGCAGCTGCAACGTCGAGCAGTACAGCAGCTGA MLFAGWFHYHKAAPKLAWFQDVESMLNHHLAGLLGLGSLSWAGHQIHELHYKHRALEHHTASIPSRNRADGSSCNVEQYSS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05875.1 vs. NCBI nr
Match: gi|1002161805|ref|YP_009231911.1| (photosystem I P700 apoprotein A1 (chloroplast) [Goodyera velutina]) HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. NCBI nr
Match: gi|922328589|ref|XP_013443687.1| (photosystem I P700 chlorophyll A apoprotein A2 [Medicago truncatula]) HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. NCBI nr
Match: gi|17369250|sp|Q9MUK3.1|PSAA_SEQSE (RecName: Full=Photosystem I P700 chlorophyll a apoprotein A1; AltName: Full=PSI-A; AltName: Full=PsaA) HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. NCBI nr
Match: gi|228016729|gb|ACP51557.1| (photosystem I P700 chlorophyll a apoprotein A1 [Pinus aristata]) HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. NCBI nr
Match: gi|694137528|ref|YP_009073427.1| (photosystem I P700 apoprotein A1 (plastid) [Thysanolaena latifolia]) HSP 1 Score: 106.3 bits (264), Expect = 2.600e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: T1SCI7_COCNU (Photosystem I P700 chlorophyll a apoprotein A1 OS=Cocos nucifera GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: A0A0U2DX72_9ASPA (Photosystem I P700 chlorophyll a apoprotein A1 OS=Anoectochilus roxburghii GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: A0A0D4WU94_9LILI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Carludovica palmata GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: A0A0H3VTJ1_9LILI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Leopoldinia pulchra GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Match: H6SZB6_9POAL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Joinvillea ascendens GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.800e-20 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_ORYSI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Oryza sativa subsp. indica GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_SEQSE (Photosystem I P700 chlorophyll a apoprotein A1 (Fragment) OS=Sequoia sempervirens GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_ACOCL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Acorus calamus GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_SPIOL (Photosystem I P700 chlorophyll a apoprotein A1 OS=Spinacia oleracea GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Match: PSAA_SORBI (Photosystem I P700 chlorophyll a apoprotein A1 OS=Sorghum bicolor GN=psaA PE=3 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 1.600e-22 Identity = 47/47 (100.00%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. TAIR (Arabidopsis)
Match: ATCG00350.1 (Photosystem I, PsaA/PsaB protein) HSP 1 Score: 105.9 bits (263), Expect = 1.200e-23 Identity = 46/47 (97.87%), Postives = 47/47 (100.00%), Query Frame = 1
BLAST of Spo05875.1 vs. TAIR (Arabidopsis)
Match: ATCG00340.1 (Photosystem I, PsaA/PsaB protein) HSP 1 Score: 60.1 bits (144), Expect = 7.400e-10 Identity = 24/47 (51.06%), Postives = 33/47 (70.21%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05875.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05875.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05875.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05875.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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