Spo05879 (gene)

Overview
NameSpo05879
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 48938239 .. 48939979 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGAATGTGGAAGATGTAGGAGGGGCTGGGAACAAGTCAAAGATAAACAAGGAAACCAGTGATGGTGTTAATGCAATTCAAGTCAAGAATGATACATAAAGCTTTGACGGAAGTAAAGAAAACAAGAAAAACAAGAAGAGAGTCAAGCTTGAAAACTGTGGAAAACAATGGTGATGAGCAAAACAATGGTGATGAGCCAAACAATGGGACTTGGGATGATTAAGGTTATAGGACTTATGGTAATACTGTGAGTTTTGATGAATTTGCAAAAAAAGGCCCTCCTTTTGCTCATTTCTATGTTGGTTTTGTTCAATATTGGTATCTTGGAGTTATAGATGATGGGCAATAGCTGAATTATTGGGGAATTTCTGGGTTATTAGTGAATTTATGCTCTTTTGATTGCAATTACATTGATGAGTTTCGGAAGTGATGAACATTAGCTGCGTTTTTCGCGAAAATTCGGATTATTATTGAATTCAAGTTGGTTTAATCTAGGACAAGAATATTATTGGTAGGAATCCATGGCCCTAAAGTGGGAAATATTGACATGGTTAGAGGTTTTAGGTAGAAGTGGGAAATATTGACATGGTTAGAGGTTTTAGGTAGAAGTAGGAAATATTGACATGGTTAGAGGTTTTAGGTAGTCATTGTGATTTTGTTAGGATTATATTATCAAGCGGTTAGTGAAGAGGGGCTCCATTAGTGTAACTTAGTATTATACAAACGATTATTAAGGAGTATATGTAGCAATAAACCATTGTTCATGCGAATGGAGCTAATGAAAGTAGTTAATTGCACGAGGCTAAAATGTTGTTGCCGATCCTTATTCGGATAGGAGGTCTTTCTTGGTTTTTTTCCCATCTAGGAACCTTGCCATTATTCCTCGTATTACTTTGGTAGTACGAGTGTATTGAAATATCAACTGATCAAGCTAGAGAAATTAGAAAATGTATATATACTTCTTGAATTGAAATGAATAAATCATAAAGTTTCAATAGTTTCACGAATCCTGACAAAATTCGTTTACATAGTTATGGTGGCTCATCATTTGATGCAAGGAGCTTCTTTGCATTCACACAATACAATAGTACTTGTGCATGCACTAGTTATTCCTTTTGTATAGTTTGTACTTTGTAGAACCCGTCTTAGTCATATAGTAAGAAGCAAGGAATGAGGTTAGTAGAGCGGATTGTTGGTGTAAGACTCTTGTATCCAACCTTCTACACTGATGAAAGGACTGTTTTTTTCATTAGAGTGAATGATCCTATTTGTGATTTCCTTGATGTCAATGAATAGGAGTGTGAAAGGGTAATACGTAGTTTCATGGAGATGGCATTCTTATTCATTTTTCCAGCGAAGAAGCTGAAGCTCCATAGAAATGATTGTTCTTTGTTTACAAAATTGGATTAAGTTGCTTTATGATCATGATGCAACCATGACCTACATCAATTTGAAATTATAAGTAGCTTGAGAGACATTCTTAAAGCGATGATTTTAATATAATTATTAACTTCCATAACTGTTTCTTCTGACCTTAAACATCCATTTTAACAGGCACCCCTGAGGGGCTTTCTTAATCTTCAAAGAATAGGACAAATTCAGCGCCAGTATACTGTTACAAACTTACAACTGGGGTTCTGGCTATAGCAGCTTGTTCAACACCCAGGCTGCTTCAACATCTAAAACCCCTCAGCCTCCACGCCTTTCTCCTCCTCAAAGAAAAGTCATTTCGGTGGCCTGA

mRNA sequence

AGGAATGTGGAAGATGTAGGAGGGGCTGGGAACAAGTCAAAGATAAACAAGGAAACCAGTGATGGTGTTAATGCAATTCAAGTCAAGAATGATACATAAAGCTTTGACGGAAGTAAAGAAAACAAGAAAAACAAGAAGAGAGTCAAGCTTGAAAACTGTGGAAAACAATGGTGATGAGCAAAACAATGGTGATGAGCCAAACAATGGGACTTGGGATGATTAAGGTTATAGGACTTATGGACAAATTCAGCGCCAGTATACTGTTACAAACTTACAACTGGGGTTCTGGCTATAGCAGCTTGTTCAACACCCAGGCTGCTTCAACATCTAAAACCCCTCAGCCTCCACGCCTTTCTCCTCCTCAAAGAAAAGTCATTTCGGTGGCCTGA

Coding sequence (CDS)

ATGGTGATGAGCAAAACAATGGTGATGAGCCAAACAATGGGACTTGGGATGATTAAGGTTATAGGACTTATGGACAAATTCAGCGCCAGTATACTGTTACAAACTTACAACTGGGGTTCTGGCTATAGCAGCTTGTTCAACACCCAGGCTGCTTCAACATCTAAAACCCCTCAGCCTCCACGCCTTTCTCCTCCTCAAAGAAAAGTCATTTCGGTGGCCTGA

Protein sequence

MVMSKTMVMSQTMGLGMIKVIGLMDKFSASILLQTYNWGSGYSSLFNTQAASTSKTPQPPRLSPPQRKVISVA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05879.1Spo05879.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo05879.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05879.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05879.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
BLAST of Spo05879.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007267 cell-cell signaling
biological_process GO:0048608 reproductive structure development
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006487 protein N-linked glycosylation
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0022414 reproductive process
biological_process GO:0009657 plastid organization
biological_process GO:0009791 post-embryonic development
biological_process GO:0034968 histone lysine methylation
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0032776 DNA methylation on cytosine
biological_process GO:0006261 DNA-dependent DNA replication
biological_process GO:0006342 chromatin silencing
biological_process GO:0007049 cell cycle
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006412 translation
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0071702 organic substance transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0009561 megagametogenesis
biological_process GO:0033036 macromolecule localization
biological_process GO:0009987 cellular process
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006449 regulation of translational termination
biological_process GO:0009658 chloroplast organization
biological_process GO:0043488 regulation of mRNA stability
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0006400 tRNA modification
biological_process GO:0001510 RNA methylation
biological_process GO:0008618 7-methylguanosine metabolic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006260 DNA replication
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0006364 rRNA processing
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0009845 seed germination
biological_process GO:0010162 seed dormancy process
biological_process GO:0007346 regulation of mitotic cell cycle
biological_process GO:0009909 regulation of flower development
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006606 protein import into nucleus
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0009640 photomorphogenesis
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0090305 nucleic acid phosphodiester bond hydrolysis
biological_process GO:0006312 mitotic recombination
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0009933 meristem structural organization
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0019915 lipid storage
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006302 double-strand break repair
biological_process GO:0016233 telomere capping
biological_process GO:0050826 response to freezing
biological_process GO:0010048 vernalization response
biological_process GO:0008152 metabolic process
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005737 cytoplasm
cellular_component GO:0042575 DNA polymerase complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0018444 translation release factor complex
cellular_component GO:0005634 nucleus
cellular_component GO:0009295 nucleoid
cellular_component GO:0015030 Cajal body
cellular_component GO:0016363 nuclear matrix
cellular_component GO:0005730 nucleolus
cellular_component GO:0000785 chromatin
cellular_component GO:0005732 small nucleolar ribonucleoprotein complex
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0009536 plastid
cellular_component GO:0000781 chromosome, telomeric region
cellular_component GO:0009507 chloroplast
cellular_component GO:0030870 Mre11 complex
cellular_component GO:0032040 small-subunit processome
cellular_component GO:0005840 ribosome
cellular_component GO:0016020 membrane
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005829 cytosol
molecular_function GO:0005515 protein binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004518 nuclease activity
molecular_function GO:0008146 sulfotransferase activity
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0016887 ATPase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0003747 translation release factor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005488 binding
molecular_function GO:0003677 DNA binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo108270.76Barchart | Table
Spo231270.74Barchart | Table
Spo256150.74Barchart | Table
Spo271040.72Barchart | Table
Spo049880.72Barchart | Table
Spo088790.72Barchart | Table
Spo231650.72Barchart | Table
Spo118820.72Barchart | Table
Spo133890.72Barchart | Table
Spo216460.72Barchart | Table
Spo090280.72Barchart | Table
Spo272910.71Barchart | Table
Spo052080.71Barchart | Table
Spo224750.71Barchart | Table
Spo059680.71Barchart | Table
Spo151340.71Barchart | Table
Spo266720.71Barchart | Table
Spo225250.71Barchart | Table
Spo036270.70Barchart | Table
Spo208890.70Barchart | Table
Spo219100.70Barchart | Table
Spo258460.70Barchart | Table
Spo019700.70Barchart | Table
Spo064550.70Barchart | Table
Spo194990.70Barchart | Table
Spo121430.69Barchart | Table
Spo184790.69Barchart | Table
Spo154010.69Barchart | Table
Spo170810.69Barchart | Table
Spo264520.69Barchart | Table
Spo261450.69Barchart | Table
Spo260680.69Barchart | Table
Spo249390.69Barchart | Table
Spo085330.69Barchart | Table
Spo110150.69Barchart | Table
Spo197760.69Barchart | Table
Spo133870.69Barchart | Table
Spo048510.68Barchart | Table
Spo039140.68Barchart | Table
Spo223260.68Barchart | Table
Spo030570.68Barchart | Table
Spo261960.68Barchart | Table
Spo174900.68Barchart | Table
Spo269780.68Barchart | Table
Spo001290.68Barchart | Table
Spo168310.68Barchart | Table
Spo005540.68Barchart | Table
Spo154800.68Barchart | Table
Spo154310.68Barchart | Table
Spo067890.68Barchart | Table
Spo238660.68Barchart | Table
Spo051900.68Barchart | Table
Spo156890.67Barchart | Table
Spo001550.67Barchart | Table
Spo006700.67Barchart | Table
Spo018280.67Barchart | Table
Spo018310.67Barchart | Table
Spo044530.67Barchart | Table
Spo088490.67Barchart | Table
Spo111800.67Barchart | Table
Spo132380.67Barchart | Table
Spo154820.67Barchart | Table
Spo167940.67Barchart | Table
Spo175470.67Barchart | Table
Spo182960.67Barchart | Table
Spo184800.67Barchart | Table
Spo225660.67Barchart | Table
Spo230820.67Barchart | Table
Spo238980.67Barchart | Table
Spo247860.67Barchart | Table
Spo172350.66Barchart | Table
Spo149830.66Barchart | Table
Spo022210.66Barchart | Table
Spo017130.66Barchart | Table
Spo268510.66Barchart | Table
Spo016120.66Barchart | Table
Spo067910.66Barchart | Table
Spo061370.66Barchart | Table
Spo007020.66Barchart | Table
Spo256710.66Barchart | Table
Spo256720.66Barchart | Table
Spo030590.66Barchart | Table
Spo030530.66Barchart | Table
Spo160970.66Barchart | Table
Spo161060.66Barchart | Table
Spo162010.66Barchart | Table
Spo163940.66Barchart | Table
Spo000810.66Barchart | Table
Spo173050.66Barchart | Table
Spo184460.66Barchart | Table
Spo144080.66Barchart | Table
Spo267270.66Barchart | Table
Spo135090.66Barchart | Table
Spo195190.66Barchart | Table
Spo132450.66Barchart | Table
Spo202430.66Barchart | Table
Spo207490.66Barchart | Table
Spo208940.66Barchart | Table
Spo214210.66Barchart | Table
Spo215310.66Barchart | Table
Spo216190.66Barchart | Table
Spo217220.66Barchart | Table
Spo101360.66Barchart | Table
Spo100720.66Barchart | Table
Spo094930.66Barchart | Table
Spo089680.66Barchart | Table
Spo183930.65Barchart | Table
Spo158100.65Barchart | Table
Spo122910.65Barchart | Table
Spo063990.65Barchart | Table
Spo030460.65Barchart | Table
Spo195000.65Barchart | Table
Spo219390.65Barchart | Table
Spo022420.65Barchart | Table
Spo245330.65Barchart | Table
Spo006890.65Barchart | Table
Spo126100.65Barchart | Table
Spo043500.65Barchart | Table
Spo228040.65Barchart | Table
Spo214740.65Barchart | Table
Spo038350.65Barchart | Table