Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGATTATCAAATTTCCCAAGTCCATCAGAAGGGGTTCTACCAGTGTTAGTGATGAACACAGTAATGTCAGTTGCGATTCTGAAGAACTTACTGCGGTCAATTCTTCAATTGACAGGGGCGATAAACTGGGGTTTTTCGAGTAATTTGGAAGAAAATCAATCATCACCAACAAACGAACCAAACAGAATGAGGAGATTGAGGGGTATTTCAATTACACAGTTCAAGTATTTGTGTGCAGACAAGAGCAAGAAAAGTGACAGTAACAGTAAAATTCACAGAGATGGAAATTCCAAAATTGCCCTTGAAGGAGAGTGCTGTGTTTGTTTGTGTAAATTTGAGGATGAAGAAGAGGTGAGTGAATTGTCATGTAAGCATTTCTTCCACAGAAATTGCTTGGAAAAATGGTTTGATAATCATCACACTACTTGCCCACTTTGCAGATCCATCCACTAA ATGGGATTATCAAATTTCCCAAGTCCATCAGAAGGGGTTCTACCAGTGTTAGTGATGAACACAGTAATGTCAGTTGCGATTCTGAAGAACTTACTGCGGTCAATTCTTCAATTGACAGGGGCGATAAACTGGGGTTTTTCGAGTAATTTGGAAGAAAATCAATCATCACCAACAAACGAACCAAACAGAATGAGGAGATTGAGGGGTATTTCAATTACACAGTTCAAGTATTTGTGTGCAGACAAGAGCAAGAAAAGTGACAGTAACAGTAAAATTCACAGAGATGGAAATTCCAAAATTGCCCTTGAAGGAGAGTGCTGTGTTTGTTTGTGTAAATTTGAGGATGAAGAAGAGGTGAGTGAATTGTCATGTAAGCATTTCTTCCACAGAAATTGCTTGGAAAAATGGTTTGATAATCATCACACTACTTGCCCACTTTGCAGATCCATCCACTAA ATGGGATTATCAAATTTCCCAAGTCCATCAGAAGGGGTTCTACCAGTGTTAGTGATGAACACAGTAATGTCAGTTGCGATTCTGAAGAACTTACTGCGGTCAATTCTTCAATTGACAGGGGCGATAAACTGGGGTTTTTCGAGTAATTTGGAAGAAAATCAATCATCACCAACAAACGAACCAAACAGAATGAGGAGATTGAGGGGTATTTCAATTACACAGTTCAAGTATTTGTGTGCAGACAAGAGCAAGAAAAGTGACAGTAACAGTAAAATTCACAGAGATGGAAATTCCAAAATTGCCCTTGAAGGAGAGTGCTGTGTTTGTTTGTGTAAATTTGAGGATGAAGAAGAGGTGAGTGAATTGTCATGTAAGCATTTCTTCCACAGAAATTGCTTGGAAAAATGGTTTGATAATCATCACACTACTTGCCCACTTTGCAGATCCATCCACTAA MGLSNFPSPSEGVLPVLVMNTVMSVAILKNLLRSILQLTGAINWGFSSNLEENQSSPTNEPNRMRRLRGISITQFKYLCADKSKKSDSNSKIHRDGNSKIALEGECCVCLCKFEDEEEVSELSCKHFFHRNCLEKWFDNHHTTCPLCRSIH Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05915.1 vs. NCBI nr
Match: gi|902239780|gb|KNA25722.1| (hypothetical protein SOVF_003410 [Spinacia oleracea]) HSP 1 Score: 313.2 bits (801), Expect = 2.600e-82 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
BLAST of Spo05915.1 vs. NCBI nr
Match: gi|731342168|ref|XP_010682265.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 227.6 bits (579), Expect = 1.400e-56 Identity = 117/162 (72.22%), Postives = 133/162 (82.10%), Query Frame = 1
BLAST of Spo05915.1 vs. NCBI nr
Match: gi|645230365|ref|XP_008221903.1| (PREDICTED: RING-H2 finger protein ATL47 [Prunus mume]) HSP 1 Score: 168.3 bits (425), Expect = 1.000e-38 Identity = 94/155 (60.65%), Postives = 114/155 (73.55%), Query Frame = 1
BLAST of Spo05915.1 vs. NCBI nr
Match: gi|596202066|ref|XP_007223707.1| (hypothetical protein PRUPE_ppa013029mg [Prunus persica]) HSP 1 Score: 166.4 bits (420), Expect = 3.900e-38 Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1
BLAST of Spo05915.1 vs. NCBI nr
Match: gi|568860907|ref|XP_006483954.1| (PREDICTED: probable E3 ubiquitin-protein ligase XERICO [Citrus sinensis]) HSP 1 Score: 166.4 bits (420), Expect = 3.900e-38 Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 1
BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S3M5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_003410 PE=4 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 1.800e-82 Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 1
BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C6U0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g146750 PE=4 SV=1) HSP 1 Score: 227.6 bits (579), Expect = 9.900e-57 Identity = 117/162 (72.22%), Postives = 133/162 (82.10%), Query Frame = 1
BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A061E8K8_THECC (RING/U-box superfamily protein OS=Theobroma cacao GN=TCM_010559 PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 2.700e-38 Identity = 93/151 (61.59%), Postives = 108/151 (71.52%), Query Frame = 1
BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: A0A067H3V9_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039522mg PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 2.700e-38 Identity = 85/152 (55.92%), Postives = 111/152 (73.03%), Query Frame = 1
BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Match: M5XHD4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013029mg PE=4 SV=1) HSP 1 Score: 166.4 bits (420), Expect = 2.700e-38 Identity = 90/152 (59.21%), Postives = 111/152 (73.03%), Query Frame = 1
BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: XERIC_ARATH (Probable E3 ubiquitin-protein ligase XERICO OS=Arabidopsis thaliana GN=XERICO PE=1 SV=1) HSP 1 Score: 92.8 bits (229), Expect = 3.400e-18 Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1
BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: RHA2A_ARATH (E3 ubiquitin-protein ligase RHA2A OS=Arabidopsis thaliana GN=RHA2A PE=1 SV=1) HSP 1 Score: 61.6 bits (148), Expect = 8.400e-9 Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1
BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: ATL33_ARATH (RING-H2 finger protein ATL33 OS=Arabidopsis thaliana GN=ATL33 PE=2 SV=2) HSP 1 Score: 61.6 bits (148), Expect = 8.400e-9 Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1
BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: RING4_ARATH (E3 ubiquitin-protein ligase At4g11680 OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 2.400e-8 Identity = 22/46 (47.83%), Postives = 33/46 (71.74%), Query Frame = 1
BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Match: RHA2B_ARATH (E3 ubiquitin-protein ligase RHA2B OS=Arabidopsis thaliana GN=RHA2B PE=1 SV=2) HSP 1 Score: 58.5 bits (140), Expect = 7.100e-8 Identity = 23/45 (51.11%), Postives = 30/45 (66.67%), Query Frame = 1
BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT1G67856.1 (RING/U-box superfamily protein) HSP 1 Score: 135.6 bits (340), Expect = 2.600e-32 Identity = 69/151 (45.70%), Postives = 102/151 (67.55%), Query Frame = 1
BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT1G24580.1 (RING/U-box superfamily protein) HSP 1 Score: 113.2 bits (282), Expect = 1.400e-25 Identity = 62/133 (46.62%), Postives = 80/133 (60.15%), Query Frame = 1
BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT2G04240.1 (RING/U-box superfamily protein) HSP 1 Score: 92.8 bits (229), Expect = 1.900e-19 Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1
BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT3G61460.1 (brassinosteroid-responsive RING-H2) HSP 1 Score: 63.9 bits (154), Expect = 9.600e-11 Identity = 45/143 (31.47%), Postives = 72/143 (50.35%), Query Frame = 1
BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Match: AT1G15100.1 (RING-H2 finger A2A) HSP 1 Score: 61.6 bits (148), Expect = 4.700e-10 Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05915.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05915.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05915.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo05915.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|