Spo05934 (gene) | SpinachBase

Overview


Name	Spo05934
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	(BnaA08g16440D protein) (BnaC09g47200D protein)
Location	chr1 : 49697203 .. 49697517 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTACTGAACAAAAGGCAGAAGGCACTGAACAAACCAATGGTGACAATCCGGATGTTGGGTTTGTAGAAAAAGTTGAAGCAAAGTATCACGAGCTGAGACAGCATGCTGAAACCTACCCTTATGTGTGGGCATCATATACGGTTGTTTATGGTGGATTAGGGCTTTGGTTCGCATACAGATGGAGGAAGCTCCGAAAGACTGAGGACAGAGTCCGAGTTCTTCAAGAGCGTTTGCGTCAACTAGCTCAAGCCGAGGAGTCTACTAGTAGCAGTTCTTCTGTACCCCCTAAATTGGATAAACCACCCAAGTAA

mRNA sequence

ATGGCTACTGAACAAAAGGCAGAAGGCACTGAACAAACCAATGGTGACAATCCGGATGTTGGGTTTGTAGAAAAAGTTGAAGCAAAGTATCACGAGCTGAGACAGCATGCTGAAACCTACCCTTATGTGTGGGCATCATATACGGTTGTTTATGGTGGATTAGGGCTTTGGTTCGCATACAGATGGAGGAAGCTCCGAAAGACTGAGGACAGAGTCCGAGTTCTTCAAGAGCGTTTGCGTCAACTAGCTCAAGCCGAGGAGTCTACTAGTAGCAGTTCTTCTGTACCCCCTAAATTGGATAAACCACCCAAGTAA

Coding sequence (CDS)

ATGGCTACTGAACAAAAGGCAGAAGGCACTGAACAAACCAATGGTGACAATCCGGATGTTGGGTTTGTAGAAAAAGTTGAAGCAAAGTATCACGAGCTGAGACAGCATGCTGAAACCTACCCTTATGTGTGGGCATCATATACGGTTGTTTATGGTGGATTAGGGCTTTGGTTCGCATACAGATGGAGGAAGCTCCGAAAGACTGAGGACAGAGTCCGAGTTCTTCAAGAGCGTTTGCGTCAACTAGCTCAAGCCGAGGAGTCTACTAGTAGCAGTTCTTCTGTACCCCCTAAATTGGATAAACCACCCAAGTAA

Protein sequence

MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAYRWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05934.1	Spo05934.1	mRNA

Homology

[Close]

BLAST of Spo05934.1 vs. NCBI nr
Match: gi|902212626|gb|KNA17045.1| (hypothetical protein SOVF_083740 [Spinacia oleracea])

HSP 1 Score: 208.8 bits (530), Expect = 4.700e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY
Sbjct: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK 105
           RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK
Sbjct: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK 104

[Close]

BLAST of Spo05934.1 vs. NCBI nr
Match: gi|731327249|ref|XP_010674425.1| (PREDICTED: uncharacterized protein LOC104890582 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 158.7 bits (400), Expect = 5.600e-36
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MATEQKAEGTEQT+  +P +GFV  +EAKY EL++HAE YPYVW SY VVYGG G+WFAY
Sbjct: 1   MATEQKAEGTEQTSSSDPAIGFVGNIEAKYRELKEHAEAYPYVWGSYLVVYGGFGMWFAY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK 105
           RWRKLR+TE RVR LQERLRQLAQ EES +SSSS   K+DKPPK
Sbjct: 61  RWRKLRRTESRVRGLQERLRQLAQTEESANSSSSASAKVDKPPK 104

[Close]

BLAST of Spo05934.1 vs. NCBI nr
Match: gi|590603754|ref|XP_007020085.1| (Uncharacterized protein TCM_036468 [Theobroma cacao])

HSP 1 Score: 123.2 bits (308), Expect = 2.600e-25
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MAT+Q+ E ++QT    P     E V  +Y ++++HAETYPYVWASYT+VYGGL LW AY
Sbjct: 1   MATQQEGEASQQTTS-TPATSLTELVRERYQKMKEHAETYPYVWASYTLVYGGLALWTAY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSV---PPKLDKPPK 105
           RWRKLRKTEDRVRVLQERLR+L + EE+ +S+ SV   P  +DK P+
Sbjct: 61  RWRKLRKTEDRVRVLQERLRKLIENEEAANSAKSVSKAPTSVDKTPR 106

[Close]

BLAST of Spo05934.1 vs. NCBI nr
Match: gi|694332797|ref|XP_009357019.1| (PREDICTED: uncharacterized protein LOC103947787 [Pyrus x bretschneideri])

HSP 1 Score: 121.7 bits (304), Expect = 7.500e-25
Identity = 65/108 (60.19%), Postives = 76/108 (70.37%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MATE+K E  +QT       G    VEAKY ++++HAETYPYVWASY VVYGG  LW  Y
Sbjct: 1   MATEEKGEELQQTTSPQAAAGLRGAVEAKYRQIKEHAETYPYVWASYIVVYGGFALWGTY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSS----VPPKLDKPPK 105
           RWRKLRKTEDRVR LQERLR+   AEE+++SSS+    VPP  DK  K
Sbjct: 61  RWRKLRKTEDRVRALQERLRKHYAAEEASASSSTPAVKVPPSADKISK 108

[Close]

BLAST of Spo05934.1 vs. NCBI nr
Match: gi|657975316|ref|XP_008379505.1| (PREDICTED: uncharacterized protein LOC103442492 [Malus domestica])

HSP 1 Score: 120.2 bits (300), Expect = 2.200e-24
Identity = 64/108 (59.26%), Postives = 75/108 (69.44%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MATE+K E  +QT       G    VEAKY ++++HAETYPYVWASY VVYGG  LW  Y
Sbjct: 1   MATEEKGEELQQTTSPQAAAGLRGAVEAKYRQIKEHAETYPYVWASYIVVYGGFALWGTY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSS----VPPKLDKPPK 105
           RWRKLRKTEDRVR LQERLR+   AEE+++ SS+    VPP  DK  K
Sbjct: 61  RWRKLRKTEDRVRALQERLRKHYAAEEASAGSSTPAIKVPPSADKISK 108

[Close]

BLAST of Spo05934.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RC49_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_083740 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 3.300e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY
Sbjct: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK 105
           RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK
Sbjct: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK 104

[Close]

BLAST of Spo05934.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CPW6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g078810 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 3.900e-36
Identity = 77/104 (74.04%), Postives = 87/104 (83.65%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MATEQKAEGTEQT+  +P +GFV  +EAKY EL++HAE YPYVW SY VVYGG G+WFAY
Sbjct: 1   MATEQKAEGTEQTSSSDPAIGFVGNIEAKYRELKEHAEAYPYVWGSYLVVYGGFGMWFAY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDKPPK 105
           RWRKLR+TE RVR LQERLRQLAQ EES +SSSS   K+DKPPK
Sbjct: 61  RWRKLRRTESRVRGLQERLRQLAQTEESANSSSSASAKVDKPPK 104

[Close]

BLAST of Spo05934.1 vs. UniProtKB/TrEMBL
Match: A0A061FJ10_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_036468 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.800e-25
Identity = 63/107 (58.88%), Postives = 80/107 (74.77%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MAT+Q+ E ++QT    P     E V  +Y ++++HAETYPYVWASYT+VYGGL LW AY
Sbjct: 1   MATQQEGEASQQTTS-TPATSLTELVRERYQKMKEHAETYPYVWASYTLVYGGLALWTAY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSV---PPKLDKPPK 105
           RWRKLRKTEDRVRVLQERLR+L + EE+ +S+ SV   P  +DK P+
Sbjct: 61  RWRKLRKTEDRVRVLQERLRKLIENEEAANSAKSVSKAPTSVDKTPR 106

[Close]

BLAST of Spo05934.1 vs. UniProtKB/TrEMBL
Match: M1C2J8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400022672 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.800e-24
Identity = 58/104 (55.77%), Postives = 78/104 (75.00%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTN------GDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGL 60
           M +++K+E + Q+       G  P   + +K++ +Y +++++AETYPYVW SY VVYGGL
Sbjct: 1   MTSQEKSESSPQSAEAEKQLGSYPYTNWADKIQEQYQKIKENAETYPYVWGSYIVVYGGL 60

Query: 61  GLWFAYRWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPK 99
           GLWF YRWRKLRKTE+RVRVLQERLR+L +AEES SSSS+   K
Sbjct: 61  GLWFTYRWRKLRKTENRVRVLQERLRKLVEAEESVSSSSATTSK 104

[Close]

BLAST of Spo05934.1 vs. UniProtKB/TrEMBL
Match: K4C6E5_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 7.600e-24
Identity = 64/108 (59.26%), Postives = 80/108 (74.07%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQ-TNGDNPDVGF-----VEKVEAKYHELRQHAETYPYVWASYTVVYGGL 60
           MAT++K+E  E  T  D     +       K++ +Y +++++AETYPYVW SYTVVYGGL
Sbjct: 26  MATQEKSEVIEPPTTVDKQSESYSYTTWAGKIQEQYQKVKENAETYPYVWGSYTVVYGGL 85

Query: 61  GLWFAYRWRKLRKTEDRVRVLQERLRQLAQAEESTSSS-SSVPPKLDK 102
           GLWFAYRWR+LRKTEDRVRVLQ+RLR+L QAEESTSSS +  P   DK
Sbjct: 86  GLWFAYRWRRLRKTEDRVRVLQDRLRKLVQAEESTSSSVTKAPSSSDK 133

[Close]

BLAST of Spo05934.1 vs. TAIR (Arabidopsis)
Match: AT5G09270.1 (unknown protein)

HSP 1 Score: 104.4 bits (259), Expect = 4.400e-23
Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1


		  
Query: 1   MATEQKAEGTEQTNGDNPDVGFVEKVEAKYHELRQHAETYPYVWASYTVVYGGLGLWFAY 60
           MATE      +++       GFV  +E +Y +LR HAE YPYVW SYTVVYGGL LW AY
Sbjct: 1   MATEHSGLEDQESQPSQVAPGFVGAIEEQYKKLRDHAEAYPYVWGSYTVVYGGLFLWTAY 60

Query: 61  RWRKLRKTEDRVRVLQERLRQLAQAEESTSSSSSVPPKLDK 102
           RWRKLR+TEDRVR LQ +LR+L + E++  ++S     +DK
Sbjct: 61  RWRKLRRTEDRVRGLQTKLRKLVENEQAAVTASKSAQSVDK 101

The following BLAST results are available for this feature:

BLAST of Spo05934.1 vs. NCBI nr
BLAST of Spo05934.1 vs. UniProtKB/TrEMBL
BLAST of Spo05934.1 vs. ExPASy Swiss-Prot
BLAST of Spo05934.1 vs. TAIR (Arabidopsis)

BLAST of Spo05934.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902212626\|gb\|KNA17045.1\|	4.7e-51	100.	hypothetical protein SOVF_0837...	[more]
gi\|731327249\|ref\|XP_010674425.1\|	5.6e-36	74.0	PREDICTED: uncharacterized pro...	[more]
gi\|590603754\|ref\|XP_007020085.1\|	2.6e-25	58.8	Uncharacterized protein TCM_03...	[more]
gi\|694332797\|ref\|XP_009357019.1\|	7.5e-25	60.1	PREDICTED: uncharacterized pro...	[more]
gi\|657975316\|ref\|XP_008379505.1\|	2.2e-24	59.2	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo05934.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RC49_SPIOL	3.3e-51	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CPW6_BETVU	3.9e-36	74.0	Uncharacterized protein OS=Bet...	[more]
A0A061FJ10_THECC	1.8e-25	58.8	Uncharacterized protein OS=The...	[more]
M1C2J8_SOLTU	5.8e-24	55.7	Uncharacterized protein OS=Sol...	[more]
K4C6E5_SOLLC	7.6e-24	59.2	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo05934.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo05934.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G09270.1	4.4e-23	52.4	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 65..85 scor
None	No IPR available	PANTHER	PTHR36794	FAMILY NOT NAMED	coord: 11..93 score: 1.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0042545	cell wall modification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006412	translation
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009840	chloroplastic endopeptidase Clp complex
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0005618	cell wall
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18784	0.73	Barchart \| Table
Spo06097	0.73	Barchart \| Table
Spo17688	0.72	Barchart \| Table
Spo06101	0.72	Barchart \| Table
Spo01183	0.72	Barchart \| Table
Spo19231	0.71	Barchart \| Table
Spo02931	0.71	Barchart \| Table
Spo13818	0.69	Barchart \| Table
Spo08513	0.69	Barchart \| Table
Spo12757	0.69	Barchart \| Table
Spo00195	0.68	Barchart \| Table
Spo13732	0.68	Barchart \| Table
Spo03007	0.68	Barchart \| Table
Spo21207	0.68	Barchart \| Table
Spo22535	0.67	Barchart \| Table
Spo06711	0.67	Barchart \| Table
Spo23092	0.67	Barchart \| Table
Spo24642	0.66	Barchart \| Table
Spo02993	0.66	Barchart \| Table
Spo04497	0.66	Barchart \| Table
Spo07821	0.66	Barchart \| Table
Spo09208	0.66	Barchart \| Table
Spo12735	0.66	Barchart \| Table
Spo20235	0.66	Barchart \| Table
Spo24416	0.66	Barchart \| Table
Spo14043	0.65	Barchart \| Table
Spo07782	0.65	Barchart \| Table
Spo00685	0.65	Barchart \| Table
Spo15934	0.65	Barchart \| Table