Spo05935 (gene)

Overview
NameSpo05935
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr1 : 49694831 .. 49697193 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCTAAAGTCAAGTAAATTACTAGAAATTATGTAACTTGCACGTGAAAAAATAGTGATACCTTTGCAATTATGCTCTAATAACTTAGTTTTACTCTTACTCGTCATCAATTTGTCGACAAATACCGATCAATAAAATGATCACGGTTTCTATTTTATTACACTTGAGGGCTTGGTGAGAAATTTAGAGTCACAAGAGGTAAAGGATGCCACACACTTTGTCCATACTAGAGGAATAATAAAGTGGTAACAAATCCATAGTGCTTTTTATAGAAAAAGAAAATGCGTTAAAATCAAGTAAAATAAAAGATTAGACAACACACGTATAAATGGTCATTGATACCAAACTTTTACAATTTTATCCCTAATAAAAGTGGGAAAATATGAATTTTGGGTTAAGCTAAGAATTACGGAGTAAAATATTAGGGATAATATTTTCCAAATTACAGATTTTTTTATTTTTTTTAATCGAAATTTCTTTTTTCTTTTTCCACCATAAATCTATAATCCTTAAAGATGTCTAAAATTATACATTATACGACTAAAATATGTTGTCACAGACTCACAATGCCCCCCCAAAACCCCCCTAAAAACCTAACCCCTTTCTCACGCGACCACCCTGGCCTTGGCACCTTCGACCTTTGAAGTCCGATCTTCCACCTTCTTCCGCCCCTTTCTCTCTCCTCCAAGTTCTCTCTGCCTTCGCCGCTGGACACTTAGCAAGGGACAATCGGAGTGGAAACCGCGATCCCCACATTTTATCCGCCGGAATCCCGCCGCCGCGGCAGCCGGACAACCGGTGAGTACTCCTGTAGCCGGGTTGTATATTTTCATTTCAAAGATTTGTTTCAGAATTACTGATATGTTGCAATTTTTCACTTCAATTTGTTTGAGTTTCTTCAATTTTATCCGTTACCTTCAGATTTATCTGGACATTGATTGTTCGTCGGTAATCAGTGTTTTTGTATAGAGTCGAGGCATTAATTTGATCATAATTTGTGATCTGGAGCAGTTAGATTGTGCTCGAAGAACGAGGATTATGTGAATGATGACAATGATCGAATTTAATTTGTCATATTGCTTAATTTTTTGAGAAGTTGCTCATTGTTACATTTGTTATTTGATTATTTCACTTATTTGGTTTCTGGTTGATGATTCGTCATTTTTTTCATAGTTTGAATGCAACTAAATTTATAATTAGAGATAATGTGAGTGAGAATTTTATTCGATTGCGAAATGTTATAGAATAGTGATTTATGTTGGGTTAAGAGACTGAAATCCGGCTAATCATTGAAAATGGATTAGGAACTTGAAATTAAGGGCTATGTTACTCCGACTCTACATTTGACCTCAAATACTCGTGTTCGTAGTTGGTATTACACTCGGATGGCCAATTGCACGAGTACCTTTACCGGATACTTGTAGCCGAGTCCAAGTAACATAGATTGTGGGTTGTAATTGCATTTCTTTTCATAGTGTGATCCACTCCTTGCTTCCCTCAATCTCTACTCCATTTTTGCTCTAGCTTTTGTCTCTTTCTCTTCCATCATCAATCTTATGTTCTGCATACTGTATGCATCCTAGTATCCTCAAAAGCTGAAGCAAACGTTTGAAGGGTCGAACTTCAACTCACATTTGAACTAGGTTTTGAAGATTTCATTATCAATTTAAAACTATAGAATTAGCATTCTGGTTCATAAAGTTTAAATTAGGTGCAGATCTATGTTACCTGGACTCGGATACCCATGTGTCCAAGTGTCCTCCACGGCTATTTTGTGAAAAAATTGCATGATTTTGGTCCAAAATGAAGTGTTGAAGTGTTCATACCATGTCCTGGTGTCGAGGATATTTGAGGTAAAATGAAGAGTGCGGGTAACAGAGGTGCAGATATTTGTCAATTGTCAGATTTGTCACTGACCAGTTCTATGTTTTTACTACATTTCTTGTCTTAGCATTGTTTATATTTTTACTAATCTTAGTTCATTCCATACACGTGGGTCATTTAATTTTGGATAATTAGTTACGTTAGAAGAGGAAAGATAAATTGCACAGCCGATAAGGAAGGGAAAAGGAAGAGAATGCAGCTCCTTTATCCTCTGATGTACCTTTGTTGGGTACTTGGGTTATGTCTGTAACTTTAGATGTTTGTTATACAAAGTAGCTCAATTCAGAATCAAACAACAGTCATCAACTTATCAGAAGTTCTTTCATTCTTTTCAAGTGAATCCAGTTTCCCCATTGTTGTGATTATTTACTTCTGTTTTGCTGTTTTTTGAAGTCGAATGTTTAGCGCAGTCTGCAACCCCCAAGAATTTTCATGAATTTTCATTTTGTTGTCTTCAGCTTTTAAGAAGGGTATAG

mRNA sequence

ATGGTGCTAAAGTCAATCCGATCTTCCACCTTCTTCCGCCCCTTTCTCTCTCCTCCAAGTTCTCTCTGCCTTCGCCGCTGGACACTTAGCAAGGGACAATCGGAGTGGAAACCGCGATCCCCACATTTTATCCGCCGGAATCCCGCCGCCGCGGCAGCCGGACAACCGCTTTTAAGAAGGGTATAG

Coding sequence (CDS)

ATGGTGCTAAAGTCAATCCGATCTTCCACCTTCTTCCGCCCCTTTCTCTCTCCTCCAAGTTCTCTCTGCCTTCGCCGCTGGACACTTAGCAAGGGACAATCGGAGTGGAAACCGCGATCCCCACATTTTATCCGCCGGAATCCCGCCGCCGCGGCAGCCGGACAACCGCTTTTAAGAAGGGTATAG

Protein sequence

MVLKSIRSSTFFRPFLSPPSSLCLRRWTLSKGQSEWKPRSPHFIRRNPAAAAAGQPLLRRV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo05935.1Spo05935.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo05935.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05935.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05935.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo05935.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0006121 mitochondrial electron transport, succinate to ubiquinone
biological_process GO:0006522 alanine metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006508 proteolysis
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0009414 response to water deprivation
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0051788 response to misfolded protein
biological_process GO:0009853 photorespiration
biological_process GO:0006421 asparaginyl-tRNA aminoacylation
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0016556 mRNA modification
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0009780 photosynthetic NADP+ reduction
biological_process GO:0042550 photosystem I stabilization
biological_process GO:0050821 protein stabilization
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006414 translational elongation
biological_process GO:0055085 transmembrane transport
biological_process GO:0030001 metal ion transport
biological_process GO:0015031 protein transport
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006446 regulation of translational initiation
cellular_component GO:0005739 mitochondrion
cellular_component GO:0009507 chloroplast
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0045281 succinate dehydrogenase complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005576 extracellular region
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005840 ribosome
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0016020 membrane
cellular_component GO:0031972 chloroplast intermembrane space
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0030093 chloroplast photosystem I
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005783 endoplasmic reticulum
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0046873 metal ion transmembrane transporter activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004816 asparagine-tRNA ligase activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0008177 succinate dehydrogenase (ubiquinone) activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0051538 3 iron, 4 sulfur cluster binding
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0051536 iron-sulfur cluster binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0003743 translation initiation factor activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo269940.83Barchart | Table
Spo182010.82Barchart | Table
Spo150920.80Barchart | Table
Spo009680.80Barchart | Table
Spo185740.79Barchart | Table
Spo046830.79Barchart | Table
Spo184440.79Barchart | Table
Spo059490.78Barchart | Table
Spo091390.78Barchart | Table
Spo272850.77Barchart | Table
Spo108630.76Barchart | Table
Spo054150.76Barchart | Table
Spo015130.75Barchart | Table
Spo206050.74Barchart | Table
Spo036260.74Barchart | Table
Spo248670.73Barchart | Table
Spo244160.73Barchart | Table
Spo217160.73Barchart | Table
Spo179030.72Barchart | Table
Spo252060.72Barchart | Table
Spo242130.71Barchart | Table
Spo247830.71Barchart | Table
Spo088610.71Barchart | Table
Spo166940.71Barchart | Table
Spo113360.71Barchart | Table
Spo188740.70Barchart | Table
Spo259950.70Barchart | Table
Spo247040.70Barchart | Table
Spo021590.70Barchart | Table
Spo013980.70Barchart | Table
Spo253040.70Barchart | Table
Spo144290.69Barchart | Table
Spo015350.69Barchart | Table
Spo022870.69Barchart | Table
Spo116820.69Barchart | Table
Spo168200.69Barchart | Table
Spo181430.69Barchart | Table
Spo248740.69Barchart | Table
Spo144040.68Barchart | Table
Spo113330.68Barchart | Table
Spo188490.68Barchart | Table
Spo094600.68Barchart | Table
Spo083080.68Barchart | Table
Spo078530.68Barchart | Table
Spo065780.68Barchart | Table
Spo005800.68Barchart | Table
Spo159020.68Barchart | Table
Spo029280.68Barchart | Table
Spo242030.67Barchart | Table
Spo061010.67Barchart | Table
Spo177610.67Barchart | Table
Spo214060.67Barchart | Table
Spo045270.66Barchart | Table
Spo038470.66Barchart | Table
Spo224520.66Barchart | Table
Spo230670.66Barchart | Table
Spo202840.66Barchart | Table
Spo007540.66Barchart | Table
Spo170390.66Barchart | Table
Spo174710.66Barchart | Table
Spo232980.66Barchart | Table
Spo105530.66Barchart | Table
Spo101290.66Barchart | Table
Spo100120.66Barchart | Table
Spo033530.65Barchart | Table
Spo214140.65Barchart | Table
Spo042040.65Barchart | Table
Spo052320.65Barchart | Table
Spo023890.65Barchart | Table