Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TAAAGTTTTGGACCTTTTAGCAGTACTATTATTTGGCAAAGCAAAACCCAAAACAGAAATCTGATATTGTGATTATATCTTATCTTATCCAATCACCATATTTCCCATATTATACACCAAAATAAAACATCATTTTTCCCATTTTTCTTCCTCTGAAAAAAATGTCAAGAACTGAGATGACAGAAATGGAAGTTGCAAAGAGGAGACTCTCAAATGTAGCCAACCATCTCAACCCAGAATTAACACTCTCGAATTCCCACCAAATTCATCATCATCATCATCATCCCTCCATTTCCTTGTCTACTACTTCCATGAATGATAACTACCACAAGGTTCATGGTCAAGTTTCGTCGAAGCCTGTCGTCTGGAAACTTGCTGCTGATGATTCTGGTAAAGATTTTATTGATATCATTTACGAAAAAGCCGTTGGTGAAGCCATTGCTAAGGTGATCACTCTCTTACAACTATTACTTCTTAGTAGAAGAAAAGTTAAATAAAAATTCAGAATTTTTGCAATGTACTCATATATAGGTTCTTTGCAATGGAAGTATGTACAAGTTTAATGCTTGAGTTATGTTTTTTTTTTATCGTATTCTTCGTTTTAATAGGGTCGGGTTAGAGATTGTCAGCTCTGAAGTAAGAAAATGCAGTCTTATAAAAGTAATAAGACTGCCTACCAAATCAGTTCTTATACATTGCTAGATCGGTCATCTTGAGCATGGCCCGAATATTTGTGGGGTTTTGGTAGAATGTTAGGCCCATTTCTGTGCCCGGCCCAACCCGGTCTGATTGTGAATTTTTTTGGGTGGGATTTGGGCAACCGAGAACTATGTAGTACAATTATAGTTATAAAATCGGCCCGACCAAAATAGCGGGTTTTGGGCACAAGGCCCAAAGTTTGGCCTGGCCCGGCCCGCCTTGATCAGGTCTACACGTTGCACAATCTTATTATTATTATTATTATTTTTTTTTCTATCTTATTTTCCCTGTTTATTGATTACATAATTATGAGTATGATCTAATAATATATAGTGGTGAGTAGATAACAATAAACAGGCCAGAGAGGAGGAATGCATTTAGACCAGAAACGATCAAGGAGCTGATTCGAGCGTTTGATGATGCAAGGGATGATAGTTCAATTGGTGTTATCATTCTAACTGGCAAGGTAAAACTTGAACCTTTGATCAACTCTAGTGAAATGTGATACATATATATAGACCTGATAAAACTGATCAGAAATATTCCAGTTTCTATTTTTCACGTTTGCCAATGCACATTTTATACCATTTATATCTATAATTACACAATACTGGTGTGAAGTTGCATGATTTGATTTTTTTTGGTGTGAAGTTTCGCGAAATACTCTTAAAAACTTTTTGTTTTGACAGGGAACCAAGGCATTTTGCAGTGGTGGAGATCAAGCAATAAGAGGAAAGGATGGCTATGTCGACTCTAAAAAAATTGGCCGTCTTAATGTTTTGGACTTGCAGGTGTTTTCATTTTCATTGAACTTAACTTGTTTCAATCTGTCTCCATTAATACTCTGAGTTGCATCTTTACTCACTCTTGCATTCATCTTCAAACAGGTCCAAATAAGACGGCTTCCAAAACCAGTCATAGCAATGGTATATATATGTTCTTCTATCATCTTGCTAATCTATGTGATTTGTCTAGCTTTAATTGCATATTATACGTCTACTGATATCTGAAGTATAAATATTCTTAAGAAATGCATATTGTACGTCTAGTGACGTCTGAAGTATGATAGATTATGTAAATAATTGTGATTTTGTTGTGTAAACATTCTTAAGAAATGCATATTATACGTCTACTGATGTCTGAAGTCTGACAGATTATGTAAATGATCGTGATTTGTAGTGTAAACATTATTAAGAAATGCATCTAATACGTCTACTGATGTCTGAAGTCTGAAGTCTGTTTTGTTTTGTCTGAATTTAGGTTGCTGGTTATGCTGTTGGAGGAGGACATATTCTACACATGGTCTGTGATCTGACTATTGCTGCTGATAACGCCATTTTCGGACAGACAGGTCCAAAGGTTGTTCATTGCTTTTCACTTCTTGAACATTGTTCACAAATTAGAAGGTGCACCCGGTTGTATGCAGCTCTACAACAACCAGGTTAAAAGGCACATTTTTCCAATTTAAAAGCACAAATTTACAGTTTAAACACACATTTTTACAGTTTAAAAGCACATACATTTTTTCAGAAAATTTCTTTTTTTTTGTAGTGATTGTGTTGTATTTAACAATATGTTCTTTTAAAGCGGATATGTTTTTTGTTTGTAAAAATGTGCTTTTAATCGAGAAATATGTGCTTTTAACAATAAAAAAATGTATTTTTGAAGAATTAAAAATACAAAACGACTTGATTGCAAGTAGAACTGCATACAACCGGGTGTACCTTCTACCAATTGAACATTGTTGGTTCGGAGTAGAGTTGTAACTATTGCCTATAACATATGCATGTCTACTGGTGGTGTATGGCAGGTAGGAAGTTTCGATGCTGGTTATGGAAGTTCGATCATGTCTCGTTTGGTTAGTATCAAACCTCAACTGATTAATTGCTCTTGACCTCATATACAACGTTTTTTGACACGGGTTTTGGTCAAGCAGATCGGACCAAAAAAGGCGCGTGAAATGTGGTTTCTTACCAGGTTTTACCCTGCAGCTGAGGCAGAAAGAATGGGACTTGTTAACACAGTTGTACCAGTAAGTAATTATCTGCAGTAACTAATTCAGAATTAAGGGTTTTAGGAGCTTAATTGTATGACATTAATCTTGTGCAGTTGGAGAGTTTGGAACAAGAGACAATAAAATGGTGTCGTGAGATCCTAAGAAACAGTCCTACTGCAATTCGAGTACTCAAATCTGCTCTGAATGCAGTTGATGATGGTCATGCAGGACTACAGGTACACACCTCAACTTCTTGTCTGAATCTGAATCATACTATAAATTATTAATTAGTACAATTGTATAACAACATACTAATTACTAAATTATGTTACTTGGACTTGTAAAATTAAGCAAATTGGAGGAGATGCAACGTTGTTGTTCTACGGAACAGAAGAAGGTAATGAAGGGAAGACAGCATATAATGAAAGAAGACCTCCTGATTTCTCCAAGTTTCCTCGCCGACCATGAAGGGGAGGACTTATCCGATACTACAGAAAACCCTTTTAATAACGTTTATTTTATTTTATTTTTTCATTTTTTAGCGTTTCTAGGAACGTTGTTAATGGATCCGCTATTAAAATGAAAATTGATCTTTGTTTTTTTTTTCTGGATGGATTTTCCTATGGGTCATTAGTGAAATTTGAATTGTCTCACATAACAAATAAATTTGAATTGAGCAAACTTGACATCCCTTTGGTCAGTGAAAATAAATAAACATTGAGTCACATTTTCGGATGAAATATAGACGCTTCAAGCCTTCAAAGCGGATATAGTTTAGGCTTTAGCTGGGATGGTTTCTAGAAATGTCAAATTGGATTCTGCAATAGATTGCAGAAAGATTCTAATCGGTTCGAGTCATATCAGATAATGATGTATATGGGATTATGAGGTCATTGCGAATTGTCGAACTACGGTCAGATCAATTTAGTTTATGACAGTTGTACACCTGTCCTGTTAACCTGTTGTCTCACAATTCAATTTTATGCCCACCAGGCCA TAAAGTTTTGGACCTTTTAGCAGTACTATTATTTGGCAAAGCAAAACCCAAAACAGAAATCTGATATTGTGATTATATCTTATCTTATCCAATCACCATATTTCCCATATTATACACCAAAATAAAACATCATTTTTCCCATTTTTCTTCCTCTGAAAAAAATGTCAAGAACTGAGATGACAGAAATGGAAGTTGCAAAGAGGAGACTCTCAAATGTAGCCAACCATCTCAACCCAGAATTAACACTCTCGAATTCCCACCAAATTCATCATCATCATCATCATCCCTCCATTTCCTTGTCTACTACTTCCATGAATGATAACTACCACAAGGTTCATGGTCAAGTTTCGTCGAAGCCTGTCGTCTGGAAACTTGCTGCTGATGATTCTGGTAAAGATTTTATTGATATCATTTACGAAAAAGCCGTTGGTGAAGCCATTGCTAAGATAACAATAAACAGGCCAGAGAGGAGGAATGCATTTAGACCAGAAACGATCAAGGAGCTGATTCGAGCGTTTGATGATGCAAGGGATGATAGTTCAATTGGTGTTATCATTCTAACTGGCAAGGGAACCAAGGCATTTTGCAGTGGTGGAGATCAAGCAATAAGAGGAAAGGATGGCTATGTCGACTCTAAAAAAATTGGCCGTCTTAATGTTTTGGACTTGCAGGTCCAAATAAGACGGCTTCCAAAACCAGTCATAGCAATGGTTGCTGGTTATGCTGTTGGAGGAGGACATATTCTACACATGGTCTGTGATCTGACTATTGCTGCTGATAACGCCATTTTCGGACAGACAGGTCCAAAGGTAGGAAGTTTCGATGCTGGTTATGGAAGTTCGATCATGTCTCGTTTGATCGGACCAAAAAAGGCGCGTGAAATGTGGTTTCTTACCAGGTTTTACCCTGCAGCTGAGGCAGAAAGAATGGGACTTGTTAACACAGTTGTACCATTGGAGAGTTTGGAACAAGAGACAATAAAATGGTGTCGTGAGATCCTAAGAAACAGTCCTACTGCAATTCGAGTACTCAAATCTGCTCTGAATGCAGTTGATGATGGTCATGCAGGACTACAGCAAATTGGAGGAGATGCAACGTTGTTGTTCTACGGAACAGAAGAAGGTAATGAAGGGAAGACAGCATATAATGAAAGAAGACCTCCTGATTTCTCCAAGTTTCCTCGCCGACCATGAAGGGGAGGACTTATCCGATACTACAGAAAACCCTTTTAATAACGTTTATTTTATTTTATTTTTTCATTTTTTAGCGTTTCTAGGAACGTTGTTAATGGATCCGCTATTAAAATGAAAATTGATCTTTGTTTTTTTTTTCTGGATGGATTTTCCTATGGGTCATTAGTGAAATTTGAATTGTCTCACATAACAAATAAATTTGAATTGAGCAAACTTGACATCCCTTTGGTCAGTGAAAATAAATAAACATTGAGTCACATTTTCGGATGAAATATAGACGCTTCAAGCCTTCAAAGCGGATATAGTTTAGGCTTTAGCTGGGATGGTTTCTAGAAATGTCAAATTGGATTCTGCAATAGATTGCAGAAAGATTCTAATCGGTTCGAGTCATATCAGATAATGATGTATATGGGATTATGAGGTCATTGCGAATTGTCGAACTACGGTCAGATCAATTTAGTTTATGACAGTTGTACACCTGTCCTGTTAACCTGTTGTCTCACAATTCAATTTTATGCCCACCAGGCCA ATGTCAAGAACTGAGATGACAGAAATGGAAGTTGCAAAGAGGAGACTCTCAAATGTAGCCAACCATCTCAACCCAGAATTAACACTCTCGAATTCCCACCAAATTCATCATCATCATCATCATCCCTCCATTTCCTTGTCTACTACTTCCATGAATGATAACTACCACAAGGTTCATGGTCAAGTTTCGTCGAAGCCTGTCGTCTGGAAACTTGCTGCTGATGATTCTGGTAAAGATTTTATTGATATCATTTACGAAAAAGCCGTTGGTGAAGCCATTGCTAAGATAACAATAAACAGGCCAGAGAGGAGGAATGCATTTAGACCAGAAACGATCAAGGAGCTGATTCGAGCGTTTGATGATGCAAGGGATGATAGTTCAATTGGTGTTATCATTCTAACTGGCAAGGGAACCAAGGCATTTTGCAGTGGTGGAGATCAAGCAATAAGAGGAAAGGATGGCTATGTCGACTCTAAAAAAATTGGCCGTCTTAATGTTTTGGACTTGCAGGTCCAAATAAGACGGCTTCCAAAACCAGTCATAGCAATGGTTGCTGGTTATGCTGTTGGAGGAGGACATATTCTACACATGGTCTGTGATCTGACTATTGCTGCTGATAACGCCATTTTCGGACAGACAGGTCCAAAGGTAGGAAGTTTCGATGCTGGTTATGGAAGTTCGATCATGTCTCGTTTGATCGGACCAAAAAAGGCGCGTGAAATGTGGTTTCTTACCAGGTTTTACCCTGCAGCTGAGGCAGAAAGAATGGGACTTGTTAACACAGTTGTACCATTGGAGAGTTTGGAACAAGAGACAATAAAATGGTGTCGTGAGATCCTAAGAAACAGTCCTACTGCAATTCGAGTACTCAAATCTGCTCTGAATGCAGTTGATGATGGTCATGCAGGACTACAGCAAATTGGAGGAGATGCAACGTTGTTGTTCTACGGAACAGAAGAAGGTAATGAAGGGAAGACAGCATATAATGAAAGAAGACCTCCTGATTTCTCCAAGTTTCCTCGCCGACCATGA MSRTEMTEMEVAKRRLSNVANHLNPELTLSNSHQIHHHHHHPSISLSTTSMNDNYHKVHGQVSSKPVVWKLAADDSGKDFIDIIYEKAVGEAIAKITINRPERRNAFRPETIKELIRAFDDARDDSSIGVIILTGKGTKAFCSGGDQAIRGKDGYVDSKKIGRLNVLDLQVQIRRLPKPVIAMVAGYAVGGGHILHMVCDLTIAADNAIFGQTGPKVGSFDAGYGSSIMSRLIGPKKAREMWFLTRFYPAAEAERMGLVNTVVPLESLEQETIKWCREILRNSPTAIRVLKSALNAVDDGHAGLQQIGGDATLLFYGTEEGNEGKTAYNERRPPDFSKFPRRP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo05978.1 vs. NCBI nr
Match: gi|902217002|gb|KNA17594.1| (hypothetical protein SOVF_078290 [Spinacia oleracea]) HSP 1 Score: 684.1 bits (1764), Expect = 1.300e-193 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1
BLAST of Spo05978.1 vs. NCBI nr
Match: gi|731343334|ref|XP_010682844.1| (PREDICTED: 1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 614.8 bits (1584), Expect = 9.400e-173 Identity = 311/343 (90.67%), Postives = 323/343 (94.17%), Query Frame = 1
BLAST of Spo05978.1 vs. NCBI nr
Match: gi|870855802|gb|KMT07518.1| (hypothetical protein BVRB_6g151320 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 607.8 bits (1566), Expect = 1.100e-170 Identity = 306/335 (91.34%), Postives = 318/335 (94.93%), Query Frame = 1
BLAST of Spo05978.1 vs. NCBI nr
Match: gi|645230225|ref|XP_008221837.1| (PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal [Prunus mume]) HSP 1 Score: 543.5 bits (1399), Expect = 2.600e-151 Identity = 274/340 (80.59%), Postives = 298/340 (87.65%), Query Frame = 1
BLAST of Spo05978.1 vs. NCBI nr
Match: gi|658009671|ref|XP_008340053.1| (PREDICTED: 1,4-Dihydroxy-2-naphthoyl-CoA synthase, peroxisomal-like [Malus domestica]) HSP 1 Score: 543.1 bits (1398), Expect = 3.500e-151 Identity = 271/340 (79.71%), Postives = 299/340 (87.94%), Query Frame = 1
BLAST of Spo05978.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RF45_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_078290 PE=3 SV=1) HSP 1 Score: 684.1 bits (1764), Expect = 8.700e-194 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1
BLAST of Spo05978.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C665_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g151320 PE=3 SV=1) HSP 1 Score: 607.8 bits (1566), Expect = 8.000e-171 Identity = 306/335 (91.34%), Postives = 318/335 (94.93%), Query Frame = 1
BLAST of Spo05978.1 vs. UniProtKB/TrEMBL
Match: M5XQE5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008367mg PE=3 SV=1) HSP 1 Score: 540.0 bits (1390), Expect = 2.000e-150 Identity = 271/340 (79.71%), Postives = 297/340 (87.35%), Query Frame = 1
BLAST of Spo05978.1 vs. UniProtKB/TrEMBL
Match: W9RCV6_9ROSA (1,4-Dihydroxy-2-naphthoyl-CoA synthase OS=Morus notabilis GN=L484_027755 PE=3 SV=1) HSP 1 Score: 538.1 bits (1385), Expect = 7.800e-150 Identity = 270/343 (78.72%), Postives = 301/343 (87.76%), Query Frame = 1
BLAST of Spo05978.1 vs. UniProtKB/TrEMBL
Match: B9SH93_RICCO (Naphthoate synthase, putative OS=Ricinus communis GN=RCOM_0527990 PE=3 SV=1) HSP 1 Score: 533.1 bits (1372), Expect = 2.500e-148 Identity = 263/344 (76.45%), Postives = 296/344 (86.05%), Query Frame = 1
BLAST of Spo05978.1 vs. ExPASy Swiss-Prot
Match: MENB_ARATH (1,4-dihydroxy-2-naphthoyl-CoA synthase, peroxisomal OS=Arabidopsis thaliana GN=MENB PE=1 SV=2) HSP 1 Score: 509.2 bits (1310), Expect = 3.500e-143 Identity = 258/343 (75.22%), Postives = 290/343 (84.55%), Query Frame = 1
BLAST of Spo05978.1 vs. ExPASy Swiss-Prot
Match: MENB_PASMU (1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Pasteurella multocida (strain Pm70) GN=menB PE=3 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 4.600e-103 Identity = 183/279 (65.59%), Postives = 222/279 (79.57%), Query Frame = 1
BLAST of Spo05978.1 vs. ExPASy Swiss-Prot
Match: MENB_HAEIN (1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=menB PE=3 SV=1) HSP 1 Score: 369.0 bits (946), Expect = 5.600e-101 Identity = 184/279 (65.95%), Postives = 219/279 (78.49%), Query Frame = 1
BLAST of Spo05978.1 vs. ExPASy Swiss-Prot
Match: MENB_ECOLI (1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli (strain K12) GN=menB PE=1 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 1.600e-100 Identity = 183/279 (65.59%), Postives = 220/279 (78.85%), Query Frame = 1
BLAST of Spo05978.1 vs. ExPASy Swiss-Prot
Match: MENB_ECOL6 (1,4-dihydroxy-2-naphthoyl-CoA synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=menB PE=3 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 1.600e-100 Identity = 183/279 (65.59%), Postives = 220/279 (78.85%), Query Frame = 1
BLAST of Spo05978.1 vs. TAIR (Arabidopsis)
Match: AT1G60550.1 (enoyl-CoA hydratase/isomerase D) HSP 1 Score: 509.2 bits (1310), Expect = 2.000e-144 Identity = 258/343 (75.22%), Postives = 290/343 (84.55%), Query Frame = 1
BLAST of Spo05978.1 vs. TAIR (Arabidopsis)
Match: AT4G16800.1 (ATP-dependent caseinolytic (Clp) protease/crotonase family protein) HSP 1 Score: 106.7 bits (265), Expect = 2.900e-23 Identity = 75/269 (27.88%), Postives = 124/269 (46.10%), Query Frame = 1
BLAST of Spo05978.1 vs. TAIR (Arabidopsis)
Match: AT4G16210.1 (enoyl-CoA hydratase/isomerase A) HSP 1 Score: 106.3 bits (264), Expect = 3.800e-23 Identity = 79/228 (34.65%), Postives = 114/228 (50.00%), Query Frame = 1
BLAST of Spo05978.1 vs. TAIR (Arabidopsis)
Match: AT3G06860.1 (multifunctional protein 2) HSP 1 Score: 71.6 bits (174), Expect = 1.000e-12 Identity = 57/206 (27.67%), Postives = 96/206 (46.60%), Query Frame = 1
BLAST of Spo05978.1 vs. TAIR (Arabidopsis)
Match: AT4G29010.1 (Enoyl-CoA hydratase/isomerase family) HSP 1 Score: 70.1 bits (170), Expect = 3.000e-12 Identity = 55/195 (28.21%), Postives = 91/195 (46.67%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo05978.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo05978.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo05978.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo05978.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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