Spo05994 (gene) | SpinachBase

Overview


Name	Spo05994
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr1 : 48779301 .. 48781683 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAGCTAGCTTGCAAAATTGGGTCTAGCTTATCTAGCCAACATGGATTTTTTCGGTATGAACTTGAGTTTTTAGGGCTACCTAAACCCGCACATTTTCCGACCAGATTAAATTTAGGACTATACTAAGCCTAAGTGATAGGAGTCAAATCAGACCGTTCTAATACTTTTACCTAAAAAACGAGCCGCTCAGATCATTCATGATTAACATTAATGATTAACATTATTTATACCTCATTACATTGACCATGAATTATTATTATTTCAAAAAAGAACACCTAAATCCCTTATTAAAAACGAGAAGTAATAAGATAAAAATATGACCTATATCATAAAATCATCATCCCTCAATCTTATTCTCATCTATCTCTCCCACCAAAACCGTAAAATGTCCACTGTAATGTGACTCGAGAATCTTACTCCTCCTTCATAGTCCTTGCTCATCCTGACGTGTCGATCGACCATGTCAAAACTTTATCTTCTTCCAGTTTTTTTCCATGTCTGCCCCACTCTCTTTTCTTTAATTTTTATTTTTCATTTTCCTAAAATTAAAATAATTCCCCACTCCTTTTTTCGAGGTTCTATAAATTCATACTCCATATCTCTTCTTTACATTCCCATTTCCTTCACAATCTATCCTATCCTCAAAAAAAAATCAATCACTGGAAATTTATCTCACTTTCTCTACCCTACCATTATTTTCAGGTATATTTTCTTCTCCCCTTTAGTTTAATTTTTGAATTTTTATAGTTTTTATTCATTTTTTCTAATTATATTCTGTATTTATTTTGATGGGGTTTTGCCATTTTGGGGTGTCTTAATTTTCTGTTGAAACTATTGTTTGAATAACCATTGCCATTGATTGCAAGTTTGTATCTTTTTTTATTTGCTACTTGTAGAGTTTGCTTATTTGGTGGAGTCATATACTCATGTACACACTTGATTCATATTACTATACTTTCTTGTTCTAATTTATCCAATGTGCAAATTGCCACTGTTTCTTGATTGACCTGCTGATTTTCTTCATCCCTTAATTATGAATCCAATCATACTTTTCATGGTTTGTTTGATGGGATCATGATATAATGCCTCATTCGGGCAATTAGTTTGATAATTTTGAGGTCTAAGTATACATTGATGATTTTCTTCATTCCTTAAGTATGAATCCAATAATACTTTTCATGATTTCTTTGATGGGATCATGATATAATGCCTCATTTGGGCAATTAGTTTGATGATTTTGATGTCTAAATATACACCCAGATCTAATTTCCTTGAATAATTTAGATTGCCCTTTCTAAAAGCCAGGACATTTTCAGATTTTCTATGTTAAACAAAGAGAAAAAGAAAGGGAAGGATCTCAATTTAATTATTATATATTTATATTACAATTCCAAAAGAAGAAATCTTCAATGTACTGATTAATTGGTTATTAGAATTGTGATTTGTATGGTTCTTTCAAATGTCTGTTAGTGGGGTAGGTGGTTGCTAGGAAGGTTAGTAACTTTAGAATATCACTTGAGATCTTTGCTTATAATATGCTTTACTGCCCCATGTGCTAGTTTATTCACTTTCTTGCTTTGAATCTACCTACCACAAGGACCACAACACCACTACCTTTTCATCCAATGATGTAGACGAGATTCAATCCATGAGTTTTGCGTTGGTGCCTCTAAACTTTATTAACTAAGCTAATTGACATACACATTATGCACGTTACTATATGTTAGTAATTGTTTTCATTTGGAAATTGTGAAATTTCAACTGTCCAACACTATAGCCTTATATAGTTCAATGGGAAGAAGAGAAGAACCATGACTCTTATAAAGAGGCCTTAATTTGAAATCTTTGAAGAATGATTCTAGGATCTCCTAACATTTACAAAGGGAGAAATGTCATTAGTGTTCTTACTTGATTCTAATTACCTCTTGCTCATGAAGATTTACTATGACATTTTACCTTCTGTTAGGGTGCGTTCTATTCAACTTATTTGACCTGATCTTATCTGAACTCGAATAGAGTTTTTTCGTGAAATATCCATGTCTTGCTCATTGCTGGTTAAATCTTAATTGGTTAACTTGTCAATTTTGACCCTGTATGATTCTTTACAGTTGATCTTCCCACATAATGGAAGTCGCCGCAGGATAATTCTGGCTATGTTCTATGGCCTTGACTGGTATTACTTGCTCTGATTCATTGCTTATGACTCATTAACTCATTTGACCCCCTGCCTTCTAGTCTTTTATTTAGCTTCTGCAGTCTGCACTATTTGTATCAAGGATTTATAGTACAGTAAAAATGATCACTTTTATTTGCAGCATGCTATTCTTTTTCCCGAACTGTTATTGATCTGATTGTAATTGTAACATATGATAGGTAA

mRNA sequence

ATGTCCAAGCTAGCTTGCAAAATTGGGTCTAGCTTATCTAGCCAACATGGATTTTTTCGGTTCTATAAATTCATACTCCATATCTCTTCTTTACATTCCCATTTCCTTCACAATCTATCCTATCCTCAAAAAAAAATCAATCACTGGAAATTTATCTCACTTTCTCTACCCTACCATTATTTTCAGTTGATCTTCCCACATAATGGAAGTCGCCGCAGGATAATTCTGGCTATGTTCTATGGCCTTGACTGGTAA

Coding sequence (CDS)

ATGTCCAAGCTAGCTTGCAAAATTGGGTCTAGCTTATCTAGCCAACATGGATTTTTTCGGTTCTATAAATTCATACTCCATATCTCTTCTTTACATTCCCATTTCCTTCACAATCTATCCTATCCTCAAAAAAAAATCAATCACTGGAAATTTATCTCACTTTCTCTACCCTACCATTATTTTCAGTTGATCTTCCCACATAATGGAAGTCGCCGCAGGATAATTCTGGCTATGTTCTATGGCCTTGACTGGTAA

Protein sequence

MSKLACKIGSSLSSQHGFFRFYKFILHISSLHSHFLHNLSYPQKKINHWKFISLSLPYHYFQLIFPHNGSRRRIILAMFYGLDW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05994.1	Spo05994.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo05994.1 vs. NCBI nr
BLAST of Spo05994.1 vs. UniProtKB/TrEMBL
BLAST of Spo05994.1 vs. ExPASy Swiss-Prot
BLAST of Spo05994.1 vs. TAIR (Arabidopsis)

BLAST of Spo05994.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05994.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05994.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo05994.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0009409	response to cold
biological_process	GO:0009269	response to desiccation
biological_process	GO:0009651	response to salt stress
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo18116	0.72	Barchart \| Table
Spo12423	0.72	Barchart \| Table
Spo20788	0.70	Barchart \| Table
Spo23856	0.70	Barchart \| Table
Spo27031	0.68	Barchart \| Table
Spo01822	0.68	Barchart \| Table
Spo02749	0.68	Barchart \| Table
Spo03442	0.67	Barchart \| Table
Spo17677	0.67	Barchart \| Table
Spo12543	0.67	Barchart \| Table
Spo04639	0.67	Barchart \| Table
Spo15700	0.66	Barchart \| Table
Spo01196	0.66	Barchart \| Table
Spo07320	0.66	Barchart \| Table
Spo10965	0.66	Barchart \| Table
Spo14240	0.66	Barchart \| Table
Spo00146	0.66	Barchart \| Table
Spo15842	0.66	Barchart \| Table
Spo26795	0.66	Barchart \| Table
Spo25016	0.65	Barchart \| Table
Spo17726	0.65	Barchart \| Table
Spo25013	0.65	Barchart \| Table