Spo05996 (gene) | SpinachBase

Overview


Name	Spo05996
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Microsomal signal peptidase 12 kDa subunit family protein
Location	chr1 : 48763851 .. 48764135 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTGGCAAGGGCAGAAAGTGGCGGAACAATGGATGCAAATTTTTCTGCTAGTTTCAGCAGCTGTGGCATTTGTGACAGGTTATGTGATTGGTTCATTCCAGTTGATGGTTCTGATCTATGCTGGCGGCGTCGTTTTGACTGCTCTGATCATCATCCCAAATTGGCCATGGTACAATCGTCATCCTCTCAATTGGCTTGATTCTAGTGAAGCTGATAAACACCCTAAACCTCAACCTGTTGTTAATTCTGGAAATAAGAAGAAAAACAACAAGCAAAAGTAG

mRNA sequence

ATGGATTGGCAAGGGCAGAAAGTGGCGGAACAATGGATGCAAATTTTTCTGCTAGTTTCAGCAGCTGTGGCATTTGTGACAGGTTATGTGATTGGTTCATTCCAGTTGATGGTTCTGATCTATGCTGGCGGCGTCGTTTTGACTGCTCTGATCATCATCCCAAATTGGCCATGGTACAATCGTCATCCTCTCAATTGGCTTGATTCTAGTGAAGCTGATAAACACCCTAAACCTCAACCTGTTGTTAATTCTGGAAATAAGAAGAAAAACAACAAGCAAAAGTAG

Coding sequence (CDS)

ATGGATTGGCAAGGGCAGAAAGTGGCGGAACAATGGATGCAAATTTTTCTGCTAGTTTCAGCAGCTGTGGCATTTGTGACAGGTTATGTGATTGGTTCATTCCAGTTGATGGTTCTGATCTATGCTGGCGGCGTCGTTTTGACTGCTCTGATCATCATCCCAAATTGGCCATGGTACAATCGTCATCCTCTCAATTGGCTTGATTCTAGTGAAGCTGATAAACACCCTAAACCTCAACCTGTTGTTAATTCTGGAAATAAGAAGAAAAACAACAAGCAAAAGTAG

Protein sequence

MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYNRHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo05996.1	Spo05996.1	mRNA

Homology

[Close]

BLAST of Spo05996.1 vs. NCBI nr
Match: gi|902237164|gb|KNA24674.1| (hypothetical protein SOVF_013600 [Spinacia oleracea])

HSP 1 Score: 190.7 bits (483), Expect = 1.200e-45
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN
Sbjct: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK 95
          RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK
Sbjct: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK 94

[Close]

BLAST of Spo05996.1 vs. NCBI nr
Match: gi|731343238|ref|XP_010682793.1| (PREDICTED: probable signal peptidase complex subunit 1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 170.6 bits (431), Expect = 1.300e-39
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK+AEQWMQI LLVSA VAFVTGYV+GSF+LMVLIYAGGVVLT+LII+PNWPW+N
Sbjct: 1  MDWQGQKMAEQWMQILLLVSAVVAFVTGYVLGSFRLMVLIYAGGVVLTSLIIVPNWPWFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK 95
          RHPLNWLD +EA KHPKPQP VNSGNKKKN KQK
Sbjct: 61 RHPLNWLDPTEAGKHPKPQPAVNSGNKKKNTKQK 94

[Close]

BLAST of Spo05996.1 vs. NCBI nr
Match: gi|224107617|ref|XP_002314538.1| (microsomal signal peptidase 12 kDa subunit family protein [Populus trichocarpa])

HSP 1 Score: 136.7 bits (343), Expect = 2.000e-29
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK AE WMQI LLV AAVA  TGY+IGSF++M+LIYAGGVV T L+ +PNWP++N
Sbjct: 1  MDWQGQKQAELWMQILLLVFAAVALATGYIIGSFRMMMLIYAGGVVFTTLVTVPNWPFFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
          RHPL WLD SEA+KHPKPQ  V S +KKK++K+
Sbjct: 61 RHPLKWLDPSEAEKHPKPQKAVVSKDKKKSSKK 93

[Close]

BLAST of Spo05996.1 vs. NCBI nr
Match: gi|566189497|ref|XP_006378290.1| (hypothetical protein POPTR_0010s06920g [Populus trichocarpa])

HSP 1 Score: 136.7 bits (343), Expect = 2.000e-29
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK AE WMQI LLV AAVA  TGY+IGSF++M+LIYAGGVV T L+ +PNWP++N
Sbjct: 1  MDWQGQKQAELWMQILLLVFAAVALATGYIIGSFRMMMLIYAGGVVFTTLVTVPNWPFFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
          RHPL WLD SEA+KHPKPQ  V S +KKK++K+
Sbjct: 61 RHPLKWLDPSEAEKHPKPQKAVVSKDKKKSSKK 93

[Close]

BLAST of Spo05996.1 vs. NCBI nr
Match: gi|590692442|ref|XP_007044056.1| (Microsomal signal peptidase 12 kDa subunit (SPC12) [Theobroma cacao])

HSP 1 Score: 135.2 bits (339), Expect = 6.000e-29
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQKVAEQ MQI LLV A +AF+TGYV+GSFQ+M+LIYAGGV LT LI +PNWP++N
Sbjct: 1  MDWQGQKVAEQTMQIMLLVFAVIAFITGYVLGSFQIMILIYAGGVTLTTLITVPNWPFFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
           HPLNWLD SEA+KHPKPQ  V+S  KKK  K+
Sbjct: 61 CHPLNWLDPSEAEKHPKPQVAVSS--KKKATKK 91

[Close]

BLAST of Spo05996.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S0H2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_013600 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 8.300e-46
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN
Sbjct: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK 95
          RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK
Sbjct: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK 94

[Close]

BLAST of Spo05996.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EW78_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g150980 PE=4 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 8.900e-40
Identity = 81/94 (86.17%), Postives = 88/94 (93.62%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK+AEQWMQI LLVSA VAFVTGYV+GSF+LMVLIYAGGVVLT+LII+PNWPW+N
Sbjct: 1  MDWQGQKMAEQWMQILLLVSAVVAFVTGYVLGSFRLMVLIYAGGVVLTSLIIVPNWPWFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQK 95
          RHPLNWLD +EA KHPKPQP VNSGNKKKN KQK
Sbjct: 61 RHPLNWLDPTEAGKHPKPQPAVNSGNKKKNTKQK 94

[Close]

BLAST of Spo05996.1 vs. UniProtKB/TrEMBL
Match: U5G3S5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s06920g PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-29
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK AE WMQI LLV AAVA  TGY+IGSF++M+LIYAGGVV T L+ +PNWP++N
Sbjct: 1  MDWQGQKQAELWMQILLLVFAAVALATGYIIGSFRMMMLIYAGGVVFTTLVTVPNWPFFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
          RHPL WLD SEA+KHPKPQ  V S +KKK++K+
Sbjct: 61 RHPLKWLDPSEAEKHPKPQKAVVSKDKKKSSKK 93

[Close]

BLAST of Spo05996.1 vs. UniProtKB/TrEMBL
Match: B9HT84_POPTR (Microsomal signal peptidase 12 kDa subunit family protein OS=Populus trichocarpa GN=POPTR_0010s06920g PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 1.400e-29
Identity = 65/93 (69.89%), Postives = 78/93 (83.87%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK AE WMQI LLV AAVA  TGY+IGSF++M+LIYAGGVV T L+ +PNWP++N
Sbjct: 1  MDWQGQKQAELWMQILLLVFAAVALATGYIIGSFRMMMLIYAGGVVFTTLVTVPNWPFFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
          RHPL WLD SEA+KHPKPQ  V S +KKK++K+
Sbjct: 61 RHPLKWLDPSEAEKHPKPQKAVVSKDKKKSSKK 93

[Close]

BLAST of Spo05996.1 vs. UniProtKB/TrEMBL
Match: A0A061E5H7_THECC (Microsomal signal peptidase 12 kDa subunit (SPC12) OS=Theobroma cacao GN=TCM_008867 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 4.100e-29
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQKVAEQ MQI LLV A +AF+TGYV+GSFQ+M+LIYAGGV LT LI +PNWP++N
Sbjct: 1  MDWQGQKVAEQTMQIMLLVFAVIAFITGYVLGSFQIMILIYAGGVTLTTLITVPNWPFFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
           HPLNWLD SEA+KHPKPQ  V+S  KKK  K+
Sbjct: 61 CHPLNWLDPSEAEKHPKPQVAVSS--KKKATKK 91

[Close]

BLAST of Spo05996.1 vs. ExPASy Swiss-Prot
Match: SPCS1_ARATH (Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana GN=At2g22425 PE=2 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.800e-26
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK+ EQ MQI L++S  VA V GY   SF+ M+LIYAGGVVLT L+ +PNWP+YN
Sbjct: 1  MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
           HPL WLD SEA+KHPKP+ VV+  +KKK +K+
Sbjct: 61 LHPLKWLDPSEAEKHPKPE-VVSVASKKKFSKK 92

[Close]

BLAST of Spo05996.1 vs. ExPASy Swiss-Prot
Match: SPCS1_PIG (Signal peptidase complex subunit 1 OS=Sus scrofa GN=SPCS1 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.500e-11
Identity = 37/79 (46.84%), Postives = 45/79 (56.96%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MD++GQK+AEQ  Q  +L SA V F+ GYV   F   V I   G   + L+ +P WP Y 
Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 71

Query: 61 RHPLNWL---DSSEADKHP 77
          RHPL WL   DS   DK P
Sbjct: 72 RHPLKWLPVQDSGTEDKKP 90

[Close]

BLAST of Spo05996.1 vs. ExPASy Swiss-Prot
Match: SPCS1_BOVIN (Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 2.500e-11
Identity = 38/84 (45.24%), Postives = 48/84 (57.14%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MD++GQK+AEQ  Q  +L SA V F+ GY+   F   V I   G   + L+ +P WP Y 
Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYLAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 71

Query: 61 RHPLNWL---DSSEADKHPKPQPV 82
          RHPL WL   DSS  DK P  + V
Sbjct: 72 RHPLKWLPVQDSSTEDKKPGERKV 95

[Close]

BLAST of Spo05996.1 vs. ExPASy Swiss-Prot
Match: SPCS1_HUMAN (Signal peptidase complex subunit 1 OS=Homo sapiens GN=SPCS1 PE=1 SV=4)

HSP 1 Score: 68.9 bits (167), Expect = 3.300e-11
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MD++GQK+AEQ  Q  +L SA V F+ GYV   F   V I   G   + L+ +P WP Y 
Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 71

Query: 61 RHPLNWL---DSSEADKHP 77
          RHPL WL   +SS  DK P
Sbjct: 72 RHPLKWLPVQESSTDDKKP 90

[Close]

BLAST of Spo05996.1 vs. ExPASy Swiss-Prot
Match: SPCS1_PONAB (Signal peptidase complex subunit 1 OS=Pongo abelii GN=SPCS1 PE=3 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.300e-11
Identity = 37/79 (46.84%), Postives = 46/79 (58.23%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MD++GQK+AEQ  Q  +L SA V F+ GYV   F   V I   G   + L+ +P WP Y 
Sbjct: 12 MDYKGQKLAEQMFQGIILFSAIVGFIYGYVAEQFGWTVYIVMAGFAFSCLLTLPPWPIYR 71

Query: 61 RHPLNWL---DSSEADKHP 77
          RHPL WL   +SS  DK P
Sbjct: 72 RHPLKWLPVQESSTDDKKP 90

[Close]

BLAST of Spo05996.1 vs. TAIR (Arabidopsis)
Match: AT4G40042.1 (Microsomal signal peptidase 12 kDa subunit (SPC12))

HSP 1 Score: 127.5 bits (319), Expect = 4.400e-30
Identity = 63/93 (67.74%), Postives = 75/93 (80.65%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK+AEQ MQI LL++A V+FV GY   SF++M+LIYAGGVVLT LI IPNWP +N
Sbjct: 1  MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
          RH L WLD SEA+KHPKPQ VV S  KK ++K+
Sbjct: 61 RHHLKWLDPSEAEKHPKPQVVVVSSKKKSSSKK 93

[Close]

BLAST of Spo05996.1 vs. TAIR (Arabidopsis)
Match: AT2G22425.1 (Microsomal signal peptidase 12 kDa subunit (SPC12))

HSP 1 Score: 119.0 bits (297), Expect = 1.600e-27
Identity = 59/93 (63.44%), Postives = 73/93 (78.49%), Query Frame = 1

		  
Query: 1  MDWQGQKVAEQWMQIFLLVSAAVAFVTGYVIGSFQLMVLIYAGGVVLTALIIIPNWPWYN 60
          MDWQGQK+ EQ MQI L++S  VA V GY   SF+ M+LIYAGGVVLT L+ +PNWP+YN
Sbjct: 1  MDWQGQKLVEQLMQILLVISGVVAVVVGYTTESFRTMMLIYAGGVVLTTLVTVPNWPFYN 60

Query: 61 RHPLNWLDSSEADKHPKPQPVVNSGNKKKNNKQ 94
           HPL WLD SEA+KHPKP+ VV+  +KKK +K+
Sbjct: 61 LHPLKWLDPSEAEKHPKPE-VVSVASKKKFSKK 92

The following BLAST results are available for this feature:

BLAST of Spo05996.1 vs. NCBI nr
BLAST of Spo05996.1 vs. UniProtKB/TrEMBL
BLAST of Spo05996.1 vs. ExPASy Swiss-Prot
BLAST of Spo05996.1 vs. TAIR (Arabidopsis)

BLAST of Spo05996.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902237164\|gb\|KNA24674.1\|	1.2e-45	100.	hypothetical protein SOVF_0136...	[more]
gi\|731343238\|ref\|XP_010682793.1\|	1.3e-39	86.1	PREDICTED: probable signal pep...	[more]
gi\|224107617\|ref\|XP_002314538.1\|	2.0e-29	69.8	microsomal signal peptidase 12...	[more]
gi\|566189497\|ref\|XP_006378290.1\|	2.0e-29	69.8	hypothetical protein POPTR_001...	[more]
gi\|590692442\|ref\|XP_007044056.1\|	6.0e-29	72.0	Microsomal signal peptidase 12...	[more]

BLAST of Spo05996.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9S0H2_SPIOL	8.3e-46	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8EW78_BETVU	8.9e-40	86.1	Uncharacterized protein OS=Bet...	[more]
U5G3S5_POPTR	1.4e-29	69.8	Uncharacterized protein OS=Pop...	[more]
B9HT84_POPTR	1.4e-29	69.8	Microsomal signal peptidase 12...	[more]
A0A061E5H7_THECC	4.1e-29	72.0	Microsomal signal peptidase 12...	[more]

BLAST of Spo05996.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
SPCS1_ARATH	2.8e-26	63.4	Probable signal peptidase comp...	[more]
SPCS1_PIG	2.5e-11	46.8	Signal peptidase complex subun...	[more]
SPCS1_BOVIN	2.5e-11	45.2	Signal peptidase complex subun...	[more]
SPCS1_HUMAN	3.3e-11	46.8	Signal peptidase complex subun...	[more]
SPCS1_PONAB	3.3e-11	46.8	Signal peptidase complex subun...	[more]

BLAST of Spo05996.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT4G40042.1	4.4e-30	67.7	Microsomal signal peptidase 12...	[more]
AT2G22425.1	1.6e-27	63.4	Microsomal signal peptidase 12...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009542	Microsomal signal peptidase 12kDa subunit	PANTHER	PTHR13202	MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT	coord: 1..94 score: 1.8
IPR009542	Microsomal signal peptidase 12kDa subunit	PFAM	PF06645	SPC12	coord: 1..70 score: 1.9
None	No IPR available	PANTHER	PTHR13202:SF0	SIGNAL PEPTIDASE COMPLEX SUBUNIT 1	coord: 1..94 score: 1.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005787	signal peptidase complex
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003735	structural constituent of ribosome

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04997	1.00	Barchart \| Table
Spo25175	0.66	Barchart \| Table
Spo19658	0.65	Barchart \| Table