Spo06004 (gene) | SpinachBase

Overview


Name	Spo06004
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Chaperone protein dnaJ-related
Location	chr1 : 48518094 .. 48519436 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTCCAAAAAGATTGTGGTGTAGGAGGTTTCCATGTAACACATCCAATCAAATCCAAGTTTGGCTTCCAAACCATTGCTTATAAACTTTGTATATCGTGTCCAATTATCTTACCACATTCACTCCCCTTTTCACCTCAACAAAAATCAAACTAAAACACCCACAAAAATCAAACAATAAAAAAAAATCAATTCTATCTTCTCAAATCCCAAATCAACATTTTCTCTCTCCTCAATTTCCCTTCAATCTTCATCCTCCTCTAAAATGGGTCCGTTGGTTTTGACCCAATTAGCTTCCGGTCTAAGTGTGTTAGCCGGGGCGGCTATAGTCAAGTCTGTGTTAGACCAGAACAACACCATGGCTGGCCCATTCCCAAGGTGCCCATCTTGCAACGGGTCGGGCCGGGTTTCCTGCTTTTGCTCCAGGTGGTCAGATGGTGATGTGGGTTGCCGTTCGTGTGCGGGTTCGGGTCGGGCTGCTTGCACCAAGTGTAGTGGTTCAGGTACCGGTCGACCTCTTCCGGCTCGGTTGATTATTCCTACTAATAATAATAATAATAATACAAATGGCCGTTCCTATTAGGCGTTGTTTGTTTTTGTTGCTAGAAAATTTGGAAAATAGAAAAAAAAAATTCCCTCTTTGTAATTTAATATAAGTACATATTTAGCCTCATTATAAACTTTTTTTTTTTTTGGTGTCGATATGTAATATATGTTGCTCATACTCAGAGATATAAATGAGATTTGTTGTTACCCCTTTTGTGTGGCAGGCTAATTTAAACTGATAACGTGACAACTATATCCGAATACGAATAAGCTTCATATGTTGTTTAGGGAGAAATGTTGTGAATTGTGGTTAATGTTGTCCATGTGCTAATAATGATCATGCATATGCTAATTATTGTGCGTCTTTTTTTTGGGTGCGAATGAACTATAAGGCATTACAAATTATAACGGTGAAGAAACGATTCGAACTTGTGACTTAGGTATGCATACCCTAATTGGTTACCACTTGTCTAAGACTCGATTGATTATGTGTTAATTACTTAATTGTGTGTTACATTTTGTGTGATAGGGATCTTTAACCTGAGAATGGTGGCTTTTTGAATGATTTTTTTTATATACTCCTAATGATAGATTAATAGTTCAGAAAACTTCATGTTCGAGTTCAATTTCTAGGCCACATTTTCTTAGATATGGTTATATCGATTTATTTTTGCCGAATTGAACTTATTTTTGCTGAATTGAACTTATTTTTGCTGTAACAATAGCCGCCCGAATTGGCAGATTTGAAAATCACATGCTCCACCAATTCATATGATGATATGAATAAACACACCTTAAG

mRNA sequence

GGTCCAAAAAGATTGTGGTGTAGGAGGTTTCCATGTAACACATCCAATCAAATCCAAGTTTGGCTTCCAAACCATTGCTTATAAACTTTGTATATCGTGTCCAATTATCTTACCACATTCACTCCCCTTTTCACCTCAACAAAAATCAAACTAAAACACCCACAAAAATCAAACAATAAAAAAAAATCAATTCTATCTTCTCAAATCCCAAATCAACATTTTCTCTCTCCTCAATTTCCCTTCAATCTTCATCCTCCTCTAAAATGGGTCCGTTGGTTTTGACCCAATTAGCTTCCGGTCTAAGTGTGTTAGCCGGGGCGGCTATAGTCAAGTCTGTGTTAGACCAGAACAACACCATGGCTGGCCCATTCCCAAGGTGCCCATCTTGCAACGGGTCGGGCCGGGTTTCCTGCTTTTGCTCCAGGTGGTCAGATGGTGATGTGGGTTGCCGTTCGTGTGCGGGTTCGGGTCGGGCTGCTTGCACCAAGTGTAGTGGTTCAGGCATTACAAATTATAACGGTGAAGAAACGATTCGAACTTGTGACTTAGGGATCTTTAACCTGAGAATGGTGGCTTTTTGAATGATTTTTTTTATATACTCCTAATGATAGATTAATAGTTCAGAAAACTTCATGTTCGAGTTCAATTTCTAGGCCACATTTTCTTAGATATGGTTATATCGATTTATTTTTGCCGAATTGAACTTATTTTTGCTGAATTGAACTTATTTTTGCTGTAACAATAGCCGCCCGAATTGGCAGATTTGAAAATCACATGCTCCACCAATTCATATGATGATATGAATAAACACACCTTAAG

Coding sequence (CDS)

ATGGGTCCGTTGGTTTTGACCCAATTAGCTTCCGGTCTAAGTGTGTTAGCCGGGGCGGCTATAGTCAAGTCTGTGTTAGACCAGAACAACACCATGGCTGGCCCATTCCCAAGGTGCCCATCTTGCAACGGGTCGGGCCGGGTTTCCTGCTTTTGCTCCAGGTGGTCAGATGGTGATGTGGGTTGCCGTTCGTGTGCGGGTTCGGGTCGGGCTGCTTGCACCAAGTGTAGTGGTTCAGGCATTACAAATTATAACGGTGAAGAAACGATTCGAACTTGTGACTTAGGGATCTTTAACCTGAGAATGGTGGCTTTTTGA

Protein sequence

MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDVGCRSCAGSGRAACTKCSGSGITNYNGEETIRTCDLGIFNLRMVAF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06004.1	Spo06004.1	mRNA

Homology

[Close]

BLAST of Spo06004.1 vs. NCBI nr
Match: gi|902196673|gb|KNA13168.1| (hypothetical protein SOVF_119170 [Spinacia oleracea])

HSP 1 Score: 162.9 bits (411), Expect = 3.000e-37
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV
Sbjct: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GCRSCAGSGRAACTKC GSG
Sbjct: 61 GCRSCAGSGRAACTKCGGSG 80

[Close]

BLAST of Spo06004.1 vs. NCBI nr
Match: gi|731343194|ref|XP_010682772.1| (PREDICTED: uncharacterized protein LOC104897564 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 144.1 bits (362), Expect = 1.400e-31
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGPLVLTQ+A+GLSVLAGAA+VKSV+DQN TMAGPFPRCP+CNGSGRV+CFCSRWSDGDV
Sbjct: 1  MGPLVLTQVATGLSVLAGAALVKSVMDQN-TMAGPFPRCPTCNGSGRVACFCSRWSDGDV 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GC SCAGSGRAAC+ C GSG
Sbjct: 61 GCSSCAGSGRAACSNCGGSG 79

[Close]

BLAST of Spo06004.1 vs. NCBI nr
Match: gi|1012103459|ref|XP_015958005.1| (PREDICTED: uncharacterized protein LOC107482124 [Arachis duranensis])

HSP 1 Score: 136.0 bits (341), Expect = 3.900e-29
Identity = 64/81 (79.01%), Postives = 73/81 (90.12%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQN-NTMAGPFPRCPSCNGSGRVSCFCSRWSDGD 60
          MGP+VLTQLA+GLSVLAGA +VKSV+D N NTMAG FPRCPSCNG+GRV+C CSRWSDGD
Sbjct: 1  MGPIVLTQLATGLSVLAGAVLVKSVMDNNPNTMAGSFPRCPSCNGTGRVTCICSRWSDGD 60

Query: 61 VGCRSCAGSGRAACTKCSGSG 81
          VGCR+CAGSGR AC+ C G+G
Sbjct: 61 VGCRTCAGSGRMACSSCGGTG 81

[Close]

BLAST of Spo06004.1 vs. NCBI nr
Match: gi|694393697|ref|XP_009372276.1| (PREDICTED: uncharacterized protein LOC103961454 [Pyrus x bretschneideri])

HSP 1 Score: 134.4 bits (337), Expect = 1.100e-28
Identity = 62/79 (78.48%), Postives = 71/79 (89.87%), Query Frame = 1

		  
Query: 2  GPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDVG 61
          GP+VLTQLA+GL VLAGA +VK+++D+N TMAGPFPRCP CNG+GRVSCFCSRWSDGDVG
Sbjct: 3  GPIVLTQLATGLGVLAGAVLVKTIMDRN-TMAGPFPRCPRCNGTGRVSCFCSRWSDGDVG 62

Query: 62 CRSCAGSGRAACTKCSGSG 81
          CRSCAGSGR  C+ C GSG
Sbjct: 63 CRSCAGSGRTLCSSCGGSG 80

[Close]

BLAST of Spo06004.1 vs. NCBI nr
Match: gi|674900017|emb|CDY32962.1| (BnaA09g16310D [Brassica napus])

HSP 1 Score: 134.4 bits (337), Expect = 1.100e-28
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGP+ +TQLA+GLSVLAGA +VKSVLDQ +   GPFPRCP+CNG+GRV+CFCSRWSDGD+
Sbjct: 1  MGPIAITQLATGLSVLAGAVLVKSVLDQKSMAGGPFPRCPTCNGTGRVTCFCSRWSDGDI 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GCR C+GSGRAAC+ C G+G
Sbjct: 61 GCRRCSGSGRAACSNCGGTG 80

[Close]

BLAST of Spo06004.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R0Y8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_119170 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 2.100e-37
Identity = 79/80 (98.75%), Postives = 79/80 (98.75%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV
Sbjct: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GCRSCAGSGRAACTKC GSG
Sbjct: 61 GCRSCAGSGRAACTKCGGSG 80

[Close]

BLAST of Spo06004.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C1W5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g150800 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.000e-31
Identity = 69/80 (86.25%), Postives = 76/80 (95.00%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGPLVLTQ+A+GLSVLAGAA+VKSV+DQN TMAGPFPRCP+CNGSGRV+CFCSRWSDGDV
Sbjct: 1  MGPLVLTQVATGLSVLAGAALVKSVMDQN-TMAGPFPRCPTCNGSGRVACFCSRWSDGDV 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GC SCAGSGRAAC+ C GSG
Sbjct: 61 GCSSCAGSGRAACSNCGGSG 79

[Close]

BLAST of Spo06004.1 vs. UniProtKB/TrEMBL
Match: A0A078H696_BRANA (BnaA09g16310D protein OS=Brassica napus GN=BnaA09g16310D PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 7.900e-29
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGP+ +TQLA+GLSVLAGA +VKSVLDQ +   GPFPRCP+CNG+GRV+CFCSRWSDGD+
Sbjct: 1  MGPIAITQLATGLSVLAGAVLVKSVLDQKSMAGGPFPRCPTCNGTGRVTCFCSRWSDGDI 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GCR C+GSGRAAC+ C G+G
Sbjct: 61 GCRRCSGSGRAACSNCGGTG 80

[Close]

BLAST of Spo06004.1 vs. UniProtKB/TrEMBL
Match: A0A059D890_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03495 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.000e-28
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGP+VLTQLA+GLSVLAGAA+VKSV+DQ   MAGPFPRCPSCNG+GRV+C CSRWSDGDV
Sbjct: 1  MGPIVLTQLATGLSVLAGAALVKSVMDQK-PMAGPFPRCPSCNGTGRVACMCSRWSDGDV 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GCR+CAGSGR  C+ C G+G
Sbjct: 61 GCRTCAGSGRMGCSSCGGTG 79

[Close]

BLAST of Spo06004.1 vs. UniProtKB/TrEMBL
Match: A0A0D3D8L0_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.000e-28
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          MGP+V+TQLA+GLSVLAGA +VKSVLDQ     GPFPRCP+CNG+GRV+CFC+RWSDGDV
Sbjct: 1  MGPIVITQLATGLSVLAGAVLVKSVLDQKPMAGGPFPRCPTCNGTGRVTCFCTRWSDGDV 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GCR C+GSGRAAC+ C G+G
Sbjct: 61 GCRRCSGSGRAACSNCGGTG 80

[Close]

BLAST of Spo06004.1 vs. TAIR (Arabidopsis)
Match: AT5G43260.1 (chaperone protein dnaJ-related)

HSP 1 Score: 128.3 bits (321), Expect = 2.900e-30
Identity = 59/80 (73.75%), Postives = 70/80 (87.50%), Query Frame = 1

		  
Query: 1  MGPLVLTQLASGLSVLAGAAIVKSVLDQNNTMAGPFPRCPSCNGSGRVSCFCSRWSDGDV 60
          M P+V+TQLA+G+SVLAGA  +KSV+DQ   MAG FPRCP+CNG+GRV+CFCSRWSDGDV
Sbjct: 1  MSPIVITQLATGISVLAGAVFIKSVMDQK-PMAGQFPRCPTCNGTGRVTCFCSRWSDGDV 60

Query: 61 GCRSCAGSGRAACTKCSGSG 81
          GCR C+GSGRAAC+ C GSG
Sbjct: 61 GCRRCSGSGRAACSNCGGSG 79

The following BLAST results are available for this feature:

BLAST of Spo06004.1 vs. NCBI nr
BLAST of Spo06004.1 vs. UniProtKB/TrEMBL
BLAST of Spo06004.1 vs. ExPASy Swiss-Prot
BLAST of Spo06004.1 vs. TAIR (Arabidopsis)

BLAST of Spo06004.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902196673\|gb\|KNA13168.1\|	3.0e-37	98.7	hypothetical protein SOVF_1191...	[more]
gi\|731343194\|ref\|XP_010682772.1\|	1.4e-31	86.2	PREDICTED: uncharacterized pro...	[more]
gi\|1012103459\|ref\|XP_015958005.1\|	3.9e-29	79.0	PREDICTED: uncharacterized pro...	[more]
gi\|694393697\|ref\|XP_009372276.1\|	1.1e-28	78.4	PREDICTED: uncharacterized pro...	[more]
gi\|674900017\|emb\|CDY32962.1\|	1.1e-28	73.7	BnaA09g16310D [Brassica napus]	[more]

BLAST of Spo06004.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9R0Y8_SPIOL	2.1e-37	98.7	Uncharacterized protein OS=Spi...	[more]
A0A0J8C1W5_BETVU	1.0e-31	86.2	Uncharacterized protein OS=Bet...	[more]
A0A078H696_BRANA	7.9e-29	73.7	BnaA09g16310D protein OS=Brass...	[more]
A0A059D890_EUCGR	1.0e-28	78.7	Uncharacterized protein OS=Euc...	[more]
A0A0D3D8L0_BRAOL	1.0e-28	75.0	Uncharacterized protein OS=Bra...	[more]

BLAST of Spo06004.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06004.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G43260.1	2.9e-30	73.7	chaperone protein dnaJ-related	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001305	Heat shock protein DnaJ, cysteine-rich domain	GENE3D	2.10.230.10		coord: 37..82 score: 8.
None	No IPR available	PANTHER	PTHR34687	FAMILY NOT NAMED	coord: 1..81 score: 8.6
None	No IPR available	PANTHER	PTHR34687:SF1	CHAPERONE PROTEIN DNAJ-LIKE PROTEIN	coord: 1..81 score: 8.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0009850	auxin metabolic process
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0050896	response to stimulus
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0048438	floral whorl development
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0046939	nucleotide phosphorylation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0009972	cytidine deamination
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0006465	signal peptide processing
biological_process	GO:0016049	cell growth
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0007033	vacuole organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0006508	proteolysis
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0015979	photosynthesis
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0019048	modulation by virus of host morphology or physiology
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0010050	vegetative phase change
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009753	response to jasmonic acid
biological_process	GO:0006275	regulation of DNA replication
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0009555	pollen development
biological_process	GO:0048451	petal formation
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0006306	DNA methylation
biological_process	GO:0006342	chromatin silencing
biological_process	GO:0008283	cell proliferation
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0009611	response to wounding
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0005983	starch catabolic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0046838	phosphorylated carbohydrate dephosphorylation
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0009853	photorespiration
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009909	regulation of flower development
biological_process	GO:0010389	regulation of G2/M transition of mitotic cell cycle
biological_process	GO:0048453	sepal formation
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0032259	methylation
biological_process	GO:0052542	defense response by callose deposition
biological_process	GO:0006574	valine catabolic process
biological_process	GO:0006568	tryptophan metabolic process
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0046251	limonene catabolic process
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0018874	benzoate metabolic process
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0009620	response to fungus
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0010200	response to chitin
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009987	cellular process
biological_process	GO:0043069	negative regulation of programmed cell death
biological_process	GO:0031047	gene silencing by RNA
biological_process	GO:0030968	endoplasmic reticulum unfolded protein response
biological_process	GO:0016043	cellular component organization
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0016471	vacuolar proton-transporting V-type ATPase complex
cellular_component	GO:0005787	signal peptidase complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0044425	membrane part
cellular_component	GO:0005634	nucleus
cellular_component	GO:0044446	intracellular organelle part
cellular_component	GO:0005887	integral component of plasma membrane
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0005795	Golgi stack
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0098588	bounding membrane of organelle
cellular_component	GO:0009579	thylakoid
molecular_function	GO:0004300	enoyl-CoA hydratase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0051750	delta3,5-delta2,4-dienoyl-CoA isomerase activity
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:2001070	starch binding
molecular_function	GO:0050308	sugar-phosphatase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004126	cytidine deaminase activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0016853	isomerase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004222	metalloendopeptidase activity
molecular_function	GO:0016746	transferase activity, transferring acyl groups
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003919	FMN adenylyltransferase activity
molecular_function	GO:0008967	phosphoglycolate phosphatase activity
molecular_function	GO:0008531	riboflavin kinase activity
molecular_function	GO:0004017	adenylate kinase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0047617	acyl-CoA hydrolase activity
molecular_function	GO:0004746	riboflavin synthase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo22811	0.83	Barchart \| Table
Spo14667	0.81	Barchart \| Table
Spo04653	0.81	Barchart \| Table
Spo11524	0.81	Barchart \| Table
Spo27081	0.81	Barchart \| Table
Spo02513	0.80	Barchart \| Table
Spo02573	0.80	Barchart \| Table
Spo13614	0.80	Barchart \| Table
Spo20849	0.79	Barchart \| Table
Spo23675	0.79	Barchart \| Table
Spo09605	0.78	Barchart \| Table
Spo05073	0.78	Barchart \| Table
Spo03195	0.78	Barchart \| Table
Spo25230	0.78	Barchart \| Table
Spo16996	0.78	Barchart \| Table
Spo23712	0.78	Barchart \| Table
Spo01261	0.78	Barchart \| Table
Spo17250	0.77	Barchart \| Table
Spo24857	0.77	Barchart \| Table
Spo20869	0.77	Barchart \| Table
Spo21660	0.77	Barchart \| Table
Spo12302	0.77	Barchart \| Table
Spo11509	0.77	Barchart \| Table
Spo09554	0.77	Barchart \| Table
Spo26045	0.77	Barchart \| Table
Spo12370	0.77	Barchart \| Table
Spo09769	0.77	Barchart \| Table
Spo17578	0.77	Barchart \| Table
Spo20912	0.76	Barchart \| Table
Spo01858	0.76	Barchart \| Table
Spo00667	0.76	Barchart \| Table
Spo09752	0.76	Barchart \| Table
Spo23384	0.76	Barchart \| Table
Spo09381	0.76	Barchart \| Table
Spo13393	0.76	Barchart \| Table
Spo28058	0.76	Barchart \| Table
Spo00283	0.75	Barchart \| Table
Spo08850	0.75	Barchart \| Table
Spo20544	0.75	Barchart \| Table
Spo24325	0.75	Barchart \| Table
Spo14779	0.75	Barchart \| Table
Spo18578	0.75	Barchart \| Table
Spo21446	0.75	Barchart \| Table
Spo15630	0.75	Barchart \| Table
Spo24675	0.75	Barchart \| Table
Spo13193	0.75	Barchart \| Table
Spo02696	0.75	Barchart \| Table
Spo13029	0.75	Barchart \| Table
Spo00748	0.75	Barchart \| Table
Spo09335	0.75	Barchart \| Table
Spo11951	0.74	Barchart \| Table
Spo11961	0.74	Barchart \| Table
Spo03572	0.74	Barchart \| Table
Spo04996	0.74	Barchart \| Table
Spo22955	0.74	Barchart \| Table
Spo26697	0.74	Barchart \| Table
Spo05402	0.74	Barchart \| Table
Spo20152	0.74	Barchart \| Table
Spo23286	0.74	Barchart \| Table
Spo10864	0.74	Barchart \| Table
Spo17612	0.74	Barchart \| Table
Spo15881	0.74	Barchart \| Table
Spo14942	0.74	Barchart \| Table
Spo00872	0.74	Barchart \| Table
Spo16339	0.74	Barchart \| Table
Spo00498	0.74	Barchart \| Table
Spo21155	0.73	Barchart \| Table
Spo15084	0.73	Barchart \| Table
Spo02932	0.73	Barchart \| Table
Spo14225	0.73	Barchart \| Table
Spo19938	0.73	Barchart \| Table
Spo17161	0.73	Barchart \| Table
Spo24046	0.73	Barchart \| Table
Spo27346	0.73	Barchart \| Table
Spo04838	0.73	Barchart \| Table
Spo13490	0.73	Barchart \| Table
Spo09499	0.73	Barchart \| Table
Spo18828	0.73	Barchart \| Table
Spo10235	0.73	Barchart \| Table
Spo06953	0.73	Barchart \| Table
Spo15461	0.72	Barchart \| Table
Spo01925	0.72	Barchart \| Table
Spo00205	0.72	Barchart \| Table
Spo05431	0.72	Barchart \| Table
Spo25159	0.72	Barchart \| Table
Spo08197	0.72	Barchart \| Table
Spo24425	0.72	Barchart \| Table
Spo01243	0.72	Barchart \| Table
Spo08935	0.72	Barchart \| Table
Spo08970	0.72	Barchart \| Table
Spo10284	0.72	Barchart \| Table
Spo27102	0.72	Barchart \| Table
Spo13691	0.72	Barchart \| Table
Spo21144	0.72	Barchart \| Table
Spo21046	0.72	Barchart \| Table
Spo20952	0.72	Barchart \| Table
Spo26789	0.72	Barchart \| Table
Spo20187	0.72	Barchart \| Table
Spo08572	0.71	Barchart \| Table
Spo25196	0.71	Barchart \| Table
Spo01714	0.71	Barchart \| Table
Spo05235	0.71	Barchart \| Table
Spo13447	0.71	Barchart \| Table
Spo14678	0.71	Barchart \| Table
Spo26430	0.71	Barchart \| Table
Spo12376	0.71	Barchart \| Table
Spo22583	0.71	Barchart \| Table
Spo06949	0.71	Barchart \| Table
Spo09798	0.71	Barchart \| Table
Spo16240	0.71	Barchart \| Table
Spo06655	0.71	Barchart \| Table
Spo14342	0.71	Barchart \| Table
Spo19898	0.71	Barchart \| Table
Spo18195	0.71	Barchart \| Table
Spo23382	0.71	Barchart \| Table
Spo27364	0.71	Barchart \| Table
Spo07236	0.71	Barchart \| Table
Spo07609	0.70	Barchart \| Table
Spo07149	0.70	Barchart \| Table
Spo06335	0.70	Barchart \| Table
Spo06164	0.70	Barchart \| Table
Spo05781	0.70	Barchart \| Table
Spo20686	0.70	Barchart \| Table
Spo10940	0.70	Barchart \| Table
Spo11317	0.70	Barchart \| Table
Spo05135	0.70	Barchart \| Table
Spo22451	0.70	Barchart \| Table
Spo03757	0.70	Barchart \| Table
Spo26117	0.70	Barchart \| Table
Spo12589	0.70	Barchart \| Table
Spo22052	0.70	Barchart \| Table
Spo12894	0.70	Barchart \| Table
Spo26858	0.70	Barchart \| Table
Spo01686	0.70	Barchart \| Table
Spo02065	0.70	Barchart \| Table
Spo13783	0.70	Barchart \| Table
Spo21215	0.70	Barchart \| Table
Spo19372	0.70	Barchart \| Table
Spo15873	0.70	Barchart \| Table
Spo20106	0.70	Barchart \| Table
Spo16955	0.70	Barchart \| Table
Spo16804	0.70	Barchart \| Table
Spo08969	0.70	Barchart \| Table
Spo07619	0.70	Barchart \| Table
Spo09290	0.70	Barchart \| Table
Spo28265	0.69	Barchart \| Table
Spo09671	0.69	Barchart \| Table
Spo05219	0.69	Barchart \| Table
Spo01923	0.69	Barchart \| Table
Spo05731	0.69	Barchart \| Table
Spo17940	0.69	Barchart \| Table
Spo01305	0.69	Barchart \| Table
Spo08645	0.69	Barchart \| Table
Spo17679	0.69	Barchart \| Table
Spo16695	0.69	Barchart \| Table
Spo18400	0.69	Barchart \| Table
Spo24566	0.69	Barchart \| Table
Spo14944	0.69	Barchart \| Table
Spo23588	0.69	Barchart \| Table
Spo18471	0.69	Barchart \| Table
Spo00536	0.69	Barchart \| Table
Spo25876	0.69	Barchart \| Table
Spo25918	0.69	Barchart \| Table
Spo22529	0.69	Barchart \| Table
Spo27374	0.69	Barchart \| Table
Spo12089	0.69	Barchart \| Table
Spo10316	0.69	Barchart \| Table
Spo12228	0.69	Barchart \| Table
Spo18502	0.69	Barchart \| Table
Spo24808	0.69	Barchart \| Table
Spo11688	0.69	Barchart \| Table
Spo14537	0.69	Barchart \| Table
Spo15639	0.69	Barchart \| Table
Spo23907	0.69	Barchart \| Table
Spo26168	0.69	Barchart \| Table
Spo01437	0.69	Barchart \| Table
Spo13202	0.69	Barchart \| Table
Spo06293	0.69	Barchart \| Table
Spo13281	0.69	Barchart \| Table
Spo28324	0.68	Barchart \| Table
Spo00114	0.68	Barchart \| Table
Spo00344	0.68	Barchart \| Table
Spo01801	0.68	Barchart \| Table
Spo02177	0.68	Barchart \| Table
Spo02482	0.68	Barchart \| Table
Spo02890	0.68	Barchart \| Table
Spo04082	0.68	Barchart \| Table
Spo04383	0.68	Barchart \| Table
Spo04433	0.68	Barchart \| Table
Spo05651	0.68	Barchart \| Table
Spo05728	0.68	Barchart \| Table
Spo05990	0.68	Barchart \| Table
Spo06398	0.68	Barchart \| Table
Spo08114	0.68	Barchart \| Table
Spo08755	0.68	Barchart \| Table
Spo09428	0.68	Barchart \| Table
Spo10473	0.68	Barchart \| Table
Spo11431	0.68	Barchart \| Table
Spo11668	0.68	Barchart \| Table
Spo11733	0.68	Barchart \| Table
Spo13210	0.68	Barchart \| Table
Spo13373	0.68	Barchart \| Table
Spo14630	0.68	Barchart \| Table
Spo16213	0.68	Barchart \| Table
Spo16801	0.68	Barchart \| Table
Spo22256	0.68	Barchart \| Table
Spo22760	0.68	Barchart \| Table
Spo22998	0.68	Barchart \| Table
Spo23818	0.68	Barchart \| Table
Spo24343	0.68	Barchart \| Table
Spo25483	0.68	Barchart \| Table
Spo25817	0.68	Barchart \| Table
Spo25838	0.67	Barchart \| Table
Spo25659	0.67	Barchart \| Table
Spo10835	0.67	Barchart \| Table
Spo17610	0.67	Barchart \| Table
Spo23518	0.67	Barchart \| Table
Spo23531	0.67	Barchart \| Table
Spo23549	0.67	Barchart \| Table
Spo09344	0.67	Barchart \| Table
Spo19217	0.67	Barchart \| Table
Spo00256	0.67	Barchart \| Table
Spo05643	0.67	Barchart \| Table
Spo23857	0.67	Barchart \| Table
Spo18775	0.67	Barchart \| Table
Spo18080	0.67	Barchart \| Table
Spo14403	0.67	Barchart \| Table
Spo14129	0.67	Barchart \| Table
Spo25171	0.67	Barchart \| Table
Spo05915	0.67	Barchart \| Table
Spo08358	0.67	Barchart \| Table
Spo08339	0.67	Barchart \| Table
Spo07941	0.67	Barchart \| Table
Spo19599	0.67	Barchart \| Table
Spo21067	0.67	Barchart \| Table
Spo14087	0.67	Barchart \| Table
Spo26986	0.67	Barchart \| Table
Spo02272	0.67	Barchart \| Table
Spo02480	0.67	Barchart \| Table
Spo26427	0.67	Barchart \| Table
Spo17209	0.67	Barchart \| Table
Spo19829	0.67	Barchart \| Table
Spo01068	0.67	Barchart \| Table
Spo17391	0.67	Barchart \| Table
Spo26013	0.67	Barchart \| Table
Spo19874	0.67	Barchart \| Table
Spo11952	0.67	Barchart \| Table
Spo11946	0.67	Barchart \| Table
Spo00677	0.67	Barchart \| Table
Spo11902	0.67	Barchart \| Table
Spo04868	0.67	Barchart \| Table
Spo00362	0.67	Barchart \| Table
Spo23058	0.67	Barchart \| Table
Spo23071	0.67	Barchart \| Table
Spo11346	0.67	Barchart \| Table
Spo09317	0.66	Barchart \| Table
Spo16293	0.66	Barchart \| Table
Spo16079	0.66	Barchart \| Table
Spo15499	0.66	Barchart \| Table
Spo15372	0.66	Barchart \| Table
Spo19986	0.66	Barchart \| Table
Spo15275	0.66	Barchart \| Table
Spo15014	0.66	Barchart \| Table
Spo20770	0.66	Barchart \| Table
Spo14980	0.66	Barchart \| Table
Spo14096	0.66	Barchart \| Table
Spo13518	0.66	Barchart \| Table
Spo12843	0.66	Barchart \| Table
Spo22403	0.66	Barchart \| Table
Spo12107	0.66	Barchart \| Table
Spo10500	0.66	Barchart \| Table
Spo18778	0.66	Barchart \| Table
Spo08997	0.66	Barchart \| Table
Spo08603	0.66	Barchart \| Table
Spo24287	0.66	Barchart \| Table
Spo08521	0.66	Barchart \| Table
Spo24712	0.66	Barchart \| Table
Spo24732	0.66	Barchart \| Table
Spo05955	0.66	Barchart \| Table
Spo04908	0.66	Barchart \| Table
Spo25390	0.66	Barchart \| Table
Spo00079	0.66	Barchart \| Table
Spo03736	0.66	Barchart \| Table
Spo02918	0.66	Barchart \| Table
Spo01706	0.66	Barchart \| Table
Spo01511	0.66	Barchart \| Table
Spo17445	0.66	Barchart \| Table
Spo18575	0.66	Barchart \| Table
Spo09149	0.65	Barchart \| Table
Spo25653	0.65	Barchart \| Table
Spo23363	0.65	Barchart \| Table
Spo25758	0.65	Barchart \| Table
Spo14416	0.65	Barchart \| Table
Spo23332	0.65	Barchart \| Table
Spo11623	0.65	Barchart \| Table
Spo04142	0.65	Barchart \| Table
Spo22436	0.65	Barchart \| Table
Spo15012	0.65	Barchart \| Table
Spo03438	0.65	Barchart \| Table
Spo15302	0.65	Barchart \| Table
Spo21525	0.65	Barchart \| Table
Spo13912	0.65	Barchart \| Table
Spo14001	0.65	Barchart \| Table
Spo24630	0.65	Barchart \| Table
Spo24590	0.65	Barchart \| Table
Spo15065	0.65	Barchart \| Table
Spo18782	0.65	Barchart \| Table
Spo06670	0.65	Barchart \| Table
Spo14084	0.65	Barchart \| Table
Spo25008	0.65	Barchart \| Table
Spo28186	0.65	Barchart \| Table
Spo24331	0.65	Barchart \| Table
Spo00354	0.65	Barchart \| Table
Spo01448	0.65	Barchart \| Table
Spo01426	0.65	Barchart \| Table