Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCTGAATAAATTCATTCAAATACCTCGCCGCCATGGCCCACCATAATGACGCCATCTACCAAAATCCACAAAAGTCTCTTCCTACTTTCTTGGTTAACCCACACCACCTTCCTCCTAATTCCTAAACCCCCAATCTCAATTTTCAACCCCAATAGCCGGAGCTCGTTTCTCTCCCAGAAATCAGCTCCGTGTGTTCTCTCTCCACCGCAAACACGATCTGACCACCTCCCAACTCCACCCTCCCTCCGCCCACCCGCTGTCCTCTCCACGGCAAACACGATCCTGACCACCTCCCAACTCCACCCTCCCTCCGCCCACTCGCTGTCCTCTCCACCCCTCAATTCCTCGAAACCCTAATCGATCAACCAATCGATTTTCAATCAATGGAATTCTTTACTCTTTAGGGTGTCCACCCCCATCTCCCTGCCACCTCTCTGACATCAACCTGTTTCGTATCTTATTCGATCTTTCAATCTTTTTCGTTATGGCGATCCGATACACCGTCGCTTTCTCCGCCACCATCGCGCAAAACATCGCTTCCTCCGCCACCTACCGTGTCACCAATTACCGATGTGTACACGAATTCGTCTCCAAACCCCGCCCTACTGTTGTTAATACACCTGCCATTTCAAACCCTAATCTTGAACCCTCGAAAAACTACAATCATCCCTATAATTGTAAGAATAGTCAACCGGATGCTCGCCGGTCGAAGCCGAGTTTTCCTCCTAGACAAAGAACGGCGTCATTTAGTACTTTCGCTGCGGAGCTGATTACTGGGAATAGTAGTAGTAGTAGTCCTGTTGTTTCTGGGCTGATCTCGCTTGTGAATGCCGCTGTCTTTGGAGGTTCAATTTCGGGTTCGATGGGGACAATGGGCGTTACGCCGCTTCGTGGCGCTTCGATAATCCCGTTTCTGCAGGTTTCGAAATGGCTTCCGTGTAATGAGCCTGCGTTGATGCGATCGACGAGTAGTGACGTTGATAGAGGAGGGACGTCGAATATTTTGGAGGAGAGTAAGATAAAGAAGAAGGTTGAGAGTAGGAATTCTGCTGCTGTGGATGTTTCTAAGGTGATTGCGCAACAGAAAGTGATCGATAGGAAGAGCTGGCTATCGAAAATGTTTAACTTCTCGTCCGATGATGCGAAGGCGGTTTTCACTGCTGTCACCGTTAATCTACTGTATAAGTCTTCCTTAGCTGAGCCTAGGTCTATTCCTTCATCTTCGATGTGCCCCACGCTTGATGTCGGTGACAGGATCTTGGCTGAGAAGGTAGTTTCTATACCGACTAAGAAATGTGATTATCTTGAATGTATTGGTAATTTGTTATATTGTTAGTTGAGTTTAAATTATAATATGACTTACAGTATATACAATTAGCTTAGTATGAATGATGATAATAGTAGTTCTTGAGTGGTTTACTTGATATATATTGTGCTGCTTTATATTAGTGTTCTGTACTGGTAGTGTTGCTGTATGGCATAAAGTTCAATGAACAGGATGATTTATTGATTTGAACCACGAACATTGTGATATACTGATATGAATAGAACTCAGGAAAGATTATGTTTACAAACTATTGAAATACAAAAACATAGATACTGGTTTATCATCTACTTGAGGTTCTATTGTATGAGTATTTTGTTGAGCCAAGAGGTTCGAATCGACAGGTTATTTGTTTTAAAGGTTGCCTTAAATGGAAGTTTCGTTACTTAGAACTCATACAATGCCATACCCTAAACATTTAACAATAAAATGCCCCCTAAACATTTAACAATGAAATGCCCCCTAAACATTTAACAATGAAATGCCCCCTAAACATTAAAGATCTATAGTATAGTATGATAATTAACTTGAATGCAAAAAAATGGAATGATAATTCACAGTTCCACACTAGATGAGCAGATGTGTGCTTTGTGTGAACTATTTGAAAGATTTGTTGAACATATACATTTTTTATGCATGAATAGAAGCTATAGGTTGTGATTTACACTAACCCCCTCCAGCTTCTTGAAGCATGATCTTTCTGTTTAAGTCTGATGAAGTTCTGGAGGTTATGAATTTTGAACTGTGTTCTTTTTTCCTTCCAGGTATCTTATATCTTCAGGGAGCCTGAGGTTTCTGATATAGTTATATTCAAAGCACCACCTATTCTTCAGGTACGGTATAAATTTGAGACACGGCATGTTGTGCAGAAAGATCCTCACTTCTGTTTGTACTTTGTAGTTTGTCAAGTAATTAACATTACAGTATTCCAATTTTTGCAGGAAATTGGGTTTGCTACCGGGGATGTGTTCATTAAAAGGATTGTAGCAAAGGCTGGTGACTGTGTTGAAGTGAGTATTTTCTATAGGTAATTGTACTCTATATGGTTTTACTTCTGTATATTTTGTTTGTTTGTATAACCTGTTCTGAATGAACTCTTGAACAGGTAAAAAATGGGCAGTTGCTAGTGAATGGTATTGTTCGTGAAGAAGAATTTATATTGGAGCCTTTAGCTTATGAAATGGAACCTGTGGTATGTTGAGGAGCTTTGACTTTTTCTAATTTACGGCGTATGTAACATTATCCTAAAACTTTCCATTTTGAATTCTCTAATGTGCCAATATATATGCAGATTGTGCCTGAAGGCTATGTCTTTGTGATGGGAGACAACCGCAACAACAGCTTCGACTCTCATAACTGGTAATGTTGCACCTCCTGTTATTTTGATACTTCGTATTGAAAGTATAGAGAGAATAACCTTGTGACACATGCCATTTCCATATATCGGCTTCATTCTGTTTTGTTGAAGTTTAAGATGTCTGCCTTCCGTTTGAGAAATTGTTGGGGGTATATTTGATGTTTTTGTGTTGTTGCTGAAATTATTTGGTAATCTGGCTTTTTTTTTACTACAGGGGTCCCCTACCTGTCAAAAACATTGTTGGCAGATCTGTATTTCGATACTGGCCTCCCACCAAATTGACAGACACTATATATGATCAACATGCGGAGAAATTTAATGTAGCTGTTTCATGACAAGTTTACCCATCCGCTTGTTATATAGAAGAATCTGAGGCGATGTCATTTTTAGTCCAAGGAAGGTGACGGACTTCACTTACATATTTTTTCAATAGTTTTTCTCTGATTACACCAACAAATGTGAATATTTTAATTGTTTGGGAGCTAATATGCTCCATATCAGCTCCCCTCGAAAAAAAAGAAACAAACTTTTTGCGATGGATTATGTTGTCTATCGTGTGACACCATCTCAATTGGTTTTTAATGGTTTGTTCATTTTTTATGACAAACACCTCCGTTTTGACTCTAAATATTGTTGATTAATGGTAATTTCCTTTCATATAACATGCTCG TCTGAATAAATTCATTCAAATACCTCGCCGCCATGGCCCACCATAATGACGCCATCTACCAAAATCCACAAAAGTCTCTTCCTACTTTCTTGGTTAACCCACACCACCTTCCTCCTAATTCCTAAACCCCCAATCTCAATTTTCAACCCCAATAGCCGGAGCTCGTTTCTCTCCCAGAAATCAGCTCCGTGTGTTCTCTCTCCACCGCAAACACGATCTGACCACCTCCCAACTCCACCCTCCCTCCGCCCACCCGCTGTCCTCTCCACGGCAAACACGATCCTGACCACCTCCCAACTCCACCCTCCCTCCGCCCACTCGCTGTCCTCTCCACCCCTCAATTCCTCGAAACCCTAATCGATCAACCAATCGATTTTCAATCAATGGAATTCTTTACTCTTTAGGGTGTCCACCCCCATCTCCCTGCCACCTCTCTGACATCAACCTGTTTCGTATCTTATTCGATCTTTCAATCTTTTTCGTTATGGCGATCCGATACACCGTCGCTTTCTCCGCCACCATCGCGCAAAACATCGCTTCCTCCGCCACCTACCGTGTCACCAATTACCGATGTGTACACGAATTCGTCTCCAAACCCCGCCCTACTGTTGTTAATACACCTGCCATTTCAAACCCTAATCTTGAACCCTCGAAAAACTACAATCATCCCTATAATTGTAAGAATAGTCAACCGGATGCTCGCCGGTCGAAGCCGAGTTTTCCTCCTAGACAAAGAACGGCGTCATTTAGTACTTTCGCTGCGGAGCTGATTACTGGGAATAGTAGTAGTAGTAGTCCTGTTGTTTCTGGGCTGATCTCGCTTGTGAATGCCGCTGTCTTTGGAGGTTCAATTTCGGGTTCGATGGGGACAATGGGCGTTACGCCGCTTCGTGGCGCTTCGATAATCCCGTTTCTGCAGGTTTCGAAATGGCTTCCGTGTAATGAGCCTGCGTTGATGCGATCGACGAGTAGTGACGTTGATAGAGGAGGGACGTCGAATATTTTGGAGGAGAGTAAGATAAAGAAGAAGGTTGAGAGTAGGAATTCTGCTGCTGTGGATGTTTCTAAGGTGATTGCGCAACAGAAAGTGATCGATAGGAAGAGCTGGCTATCGAAAATGTTTAACTTCTCGTCCGATGATGCGAAGGCGGTTTTCACTGCTGTCACCGTTAATCTACTGTATAAGTCTTCCTTAGCTGAGCCTAGGTCTATTCCTTCATCTTCGATGTGCCCCACGCTTGATGTCGGTGACAGGATCTTGGCTGAGAAGGTATCTTATATCTTCAGGGAGCCTGAGGTTTCTGATATAGTTATATTCAAAGCACCACCTATTCTTCAGGAAATTGGGTTTGCTACCGGGGATGTGTTCATTAAAAGGATTGTAGCAAAGGCTGGTGACTGTGTTGAAGTAAAAAATGGGCAGTTGCTAGTGAATGGTATTGTTCGTGAAGAAGAATTTATATTGGAGCCTTTAGCTTATGAAATGGAACCTGTGATTGTGCCTGAAGGCTATGTCTTTGTGATGGGAGACAACCGCAACAACAGCTTCGACTCTCATAACTGGGGTCCCCTACCTGTCAAAAACATTGTTGGCAGATCTGTATTTCGATACTGGCCTCCCACCAAATTGACAGACACTATATATGATCAACATGCGGAGAAATTTAATGTAGCTGTTTCATGACAAGTTTACCCATCCGCTTGTTATATAGAAGAATCTGAGGCGATGTCATTTTTAGTCCAAGGAAGGTGACGGACTTCACTTACATATTTTTTCAATAGTTTTTCTCTGATTACACCAACAAATGTGAATATTTTAATTGTTTGGGAGCTAATATGCTCCATATCAGCTCCCCTCGAAAAAAAAGAAACAAACTTTTTGCGATGGATTATGTTGTCTATCGTGTGACACCATCTCAATTGGTTTTTAATGGTTTGTTCATTTTTTATGACAAACACCTCCGTTTTGACTCTAAATATTGTTGATTAATGGTAATTTCCTTTCATATAACATGCTCG ATGGCGATCCGATACACCGTCGCTTTCTCCGCCACCATCGCGCAAAACATCGCTTCCTCCGCCACCTACCGTGTCACCAATTACCGATGTGTACACGAATTCGTCTCCAAACCCCGCCCTACTGTTGTTAATACACCTGCCATTTCAAACCCTAATCTTGAACCCTCGAAAAACTACAATCATCCCTATAATTGTAAGAATAGTCAACCGGATGCTCGCCGGTCGAAGCCGAGTTTTCCTCCTAGACAAAGAACGGCGTCATTTAGTACTTTCGCTGCGGAGCTGATTACTGGGAATAGTAGTAGTAGTAGTCCTGTTGTTTCTGGGCTGATCTCGCTTGTGAATGCCGCTGTCTTTGGAGGTTCAATTTCGGGTTCGATGGGGACAATGGGCGTTACGCCGCTTCGTGGCGCTTCGATAATCCCGTTTCTGCAGGTTTCGAAATGGCTTCCGTGTAATGAGCCTGCGTTGATGCGATCGACGAGTAGTGACGTTGATAGAGGAGGGACGTCGAATATTTTGGAGGAGAGTAAGATAAAGAAGAAGGTTGAGAGTAGGAATTCTGCTGCTGTGGATGTTTCTAAGGTGATTGCGCAACAGAAAGTGATCGATAGGAAGAGCTGGCTATCGAAAATGTTTAACTTCTCGTCCGATGATGCGAAGGCGGTTTTCACTGCTGTCACCGTTAATCTACTGTATAAGTCTTCCTTAGCTGAGCCTAGGTCTATTCCTTCATCTTCGATGTGCCCCACGCTTGATGTCGGTGACAGGATCTTGGCTGAGAAGGTATCTTATATCTTCAGGGAGCCTGAGGTTTCTGATATAGTTATATTCAAAGCACCACCTATTCTTCAGGAAATTGGGTTTGCTACCGGGGATGTGTTCATTAAAAGGATTGTAGCAAAGGCTGGTGACTGTGTTGAAGTAAAAAATGGGCAGTTGCTAGTGAATGGTATTGTTCGTGAAGAAGAATTTATATTGGAGCCTTTAGCTTATGAAATGGAACCTGTGATTGTGCCTGAAGGCTATGTCTTTGTGATGGGAGACAACCGCAACAACAGCTTCGACTCTCATAACTGGGGTCCCCTACCTGTCAAAAACATTGTTGGCAGATCTGTATTTCGATACTGGCCTCCCACCAAATTGACAGACACTATATATGATCAACATGCGGAGAAATTTAATGTAGCTGTTTCATGA MAIRYTVAFSATIAQNIASSATYRVTNYRCVHEFVSKPRPTVVNTPAISNPNLEPSKNYNHPYNCKNSQPDARRSKPSFPPRQRTASFSTFAAELITGNSSSSSPVVSGLISLVNAAVFGGSISGSMGTMGVTPLRGASIIPFLQVSKWLPCNEPALMRSTSSDVDRGGTSNILEESKIKKKVESRNSAAVDVSKVIAQQKVIDRKSWLSKMFNFSSDDAKAVFTAVTVNLLYKSSLAEPRSIPSSSMCPTLDVGDRILAEKVSYIFREPEVSDIVIFKAPPILQEIGFATGDVFIKRIVAKAGDCVEVKNGQLLVNGIVREEEFILEPLAYEMEPVIVPEGYVFVMGDNRNNSFDSHNWGPLPVKNIVGRSVFRYWPPTKLTDTIYDQHAEKFNVAVS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06028.1 vs. NCBI nr
Match: gi|902176016|gb|KNA08707.1| (hypothetical protein SOVF_160250 [Spinacia oleracea]) HSP 1 Score: 776.9 bits (2005), Expect = 1.700e-221 Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 1
BLAST of Spo06028.1 vs. NCBI nr
Match: gi|731378168|ref|XP_010668090.1| (PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 568.2 bits (1463), Expect = 1.200e-158 Identity = 304/403 (75.43%), Postives = 336/403 (83.37%), Query Frame = 1
BLAST of Spo06028.1 vs. NCBI nr
Match: gi|596184531|ref|XP_007223319.1| (hypothetical protein PRUPE_ppa007329mg [Prunus persica]) HSP 1 Score: 404.8 bits (1039), Expect = 1.700e-109 Identity = 224/399 (56.14%), Postives = 283/399 (70.93%), Query Frame = 1
BLAST of Spo06028.1 vs. NCBI nr
Match: gi|225458489|ref|XP_002284120.1| (PREDICTED: thylakoidal processing peptidase 1, chloroplastic [Vitis vinifera]) HSP 1 Score: 402.5 bits (1033), Expect = 8.500e-109 Identity = 223/402 (55.47%), Postives = 282/402 (70.15%), Query Frame = 1
BLAST of Spo06028.1 vs. NCBI nr
Match: gi|590592784|ref|XP_007017378.1| (Peptidase S24/S26A/S26B/S26C family protein, putative isoform 1 [Theobroma cacao]) HSP 1 Score: 401.4 bits (1030), Expect = 1.900e-108 Identity = 217/402 (53.98%), Postives = 288/402 (71.64%), Query Frame = 1
BLAST of Spo06028.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QN91_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160250 PE=4 SV=1) HSP 1 Score: 776.9 bits (2005), Expect = 1.200e-221 Identity = 399/399 (100.00%), Postives = 399/399 (100.00%), Query Frame = 1
BLAST of Spo06028.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DVL9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_014240 PE=4 SV=1) HSP 1 Score: 568.2 bits (1463), Expect = 8.100e-159 Identity = 304/403 (75.43%), Postives = 336/403 (83.37%), Query Frame = 1
BLAST of Spo06028.1 vs. UniProtKB/TrEMBL
Match: M5XSH9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa007329mg PE=4 SV=1) HSP 1 Score: 404.8 bits (1039), Expect = 1.200e-109 Identity = 224/399 (56.14%), Postives = 283/399 (70.93%), Query Frame = 1
BLAST of Spo06028.1 vs. UniProtKB/TrEMBL
Match: A5AT48_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021649 PE=4 SV=1) HSP 1 Score: 402.5 bits (1033), Expect = 5.900e-109 Identity = 223/402 (55.47%), Postives = 282/402 (70.15%), Query Frame = 1
BLAST of Spo06028.1 vs. UniProtKB/TrEMBL
Match: A0A061FCG8_THECC (Peptidase S24/S26A/S26B/S26C family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_033925 PE=4 SV=1) HSP 1 Score: 401.4 bits (1030), Expect = 1.300e-108 Identity = 217/402 (53.98%), Postives = 288/402 (71.64%), Query Frame = 1
BLAST of Spo06028.1 vs. ExPASy Swiss-Prot
Match: TPP2_ARATH (Probable thylakoidal processing peptidase 2, chloroplastic OS=Arabidopsis thaliana GN=TPP2 PE=2 SV=1) HSP 1 Score: 339.3 bits (869), Expect = 5.500e-92 Identity = 197/402 (49.00%), Postives = 265/402 (65.92%), Query Frame = 1
BLAST of Spo06028.1 vs. ExPASy Swiss-Prot
Match: TPP1_ARATH (Thylakoidal processing peptidase 1, chloroplastic OS=Arabidopsis thaliana GN=TPP1 PE=2 SV=2) HSP 1 Score: 324.7 bits (831), Expect = 1.400e-87 Identity = 180/324 (55.56%), Postives = 232/324 (71.60%), Query Frame = 1
BLAST of Spo06028.1 vs. ExPASy Swiss-Prot
Match: PLSP1_ARATH (Chloroplast processing peptidase OS=Arabidopsis thaliana GN=PLSP1 PE=2 SV=2) HSP 1 Score: 250.8 bits (639), Expect = 2.600e-65 Identity = 116/188 (61.70%), Postives = 149/188 (79.26%), Query Frame = 1
BLAST of Spo06028.1 vs. ExPASy Swiss-Prot
Match: LEP1_SYNY3 (Probable signal peptidase I-1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=lepB1 PE=3 SV=1) HSP 1 Score: 168.7 bits (426), Expect = 1.300e-40 Identity = 82/169 (48.52%), Postives = 114/169 (67.46%), Query Frame = 1
BLAST of Spo06028.1 vs. ExPASy Swiss-Prot
Match: LEP_PHOLA (Signal peptidase I OS=Phormidium laminosum GN=lepB PE=3 SV=1) HSP 1 Score: 144.4 bits (363), Expect = 2.600e-33 Identity = 69/162 (42.59%), Postives = 102/162 (62.96%), Query Frame = 1
BLAST of Spo06028.1 vs. TAIR (Arabidopsis)
Match: AT1G06870.1 (Peptidase S24/S26A/S26B/S26C family protein) HSP 1 Score: 339.3 bits (869), Expect = 3.100e-93 Identity = 197/402 (49.00%), Postives = 265/402 (65.92%), Query Frame = 1
BLAST of Spo06028.1 vs. TAIR (Arabidopsis)
Match: AT2G30440.1 (thylakoid processing peptide) HSP 1 Score: 324.7 bits (831), Expect = 7.900e-89 Identity = 180/324 (55.56%), Postives = 232/324 (71.60%), Query Frame = 1
BLAST of Spo06028.1 vs. TAIR (Arabidopsis)
Match: AT3G24590.1 (plastidic type i signal peptidase 1) HSP 1 Score: 250.8 bits (639), Expect = 1.500e-66 Identity = 116/188 (61.70%), Postives = 149/188 (79.26%), Query Frame = 1
BLAST of Spo06028.1 vs. TAIR (Arabidopsis)
Match: AT1G23465.1 (Peptidase S24/S26A/S26B/S26C family protein) HSP 1 Score: 74.7 bits (182), Expect = 1.400e-13 Identity = 45/131 (34.35%), Postives = 73/131 (55.73%), Query Frame = 1
BLAST of Spo06028.1 vs. TAIR (Arabidopsis)
Match: AT1G29960.1 (Peptidase S24/S26A/S26B/S26C family protein) HSP 1 Score: 72.0 bits (175), Expect = 9.300e-13 Identity = 44/134 (32.84%), Postives = 71/134 (52.99%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06028.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06028.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06028.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo06028.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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