Spo06053 (gene) | SpinachBase

Overview


Name	Spo06053
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	NADH ubiquinone oxidoreductase B22-like subunit
Location	SpoScf_00962 : 137956 .. 142448 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTCAAATTACCAACTCAACAAATAGGTTAGCTAATAGTTAAAGTCCAAGATTAGTTTTATACTATATAACATACCAATTCGCATTCCTACGATCCAAACGCCCCCTACGATCTCAACCTCTATTTCCAATCTCAACCTCTATTTCTCAAATTCGCATTCGTACGATCCAAACGCCACCTTAGGAGACATATGGGTAAATGTCTAAATGATCGGTTGGAACTTAGAACCACAAATGATGAGATGATCCTAATTTACCTTCAGAATTTCATACTCCTACGACGTCGTTGAGTGTAACCCACCCCATTGTTGGTTGCAAATCCTCTCTCTAGAAAGAAAGAATAAAAAAGAAAGAGAGGAAAGTTGAAACAACAAAAACCAGAGGAGAGAGAAAATGAGCTTGTCGACGGCGTCGTTTTTGGCGAGAAGAGCAGCACAGAAACAGAAGGTCCGACTTCTCTACCGCCGTTGTCTCCGGGATACTCTCAATTGGGCCGTTCATCGTCATCTCTTCTACGAAGATGTAATCTAATTTCCCCCATCTCAAAACCCTAATTTCATCCCCATTTCCAATTCATTTCTAGGGTTTCGATCCGATCCTGTGATTTTAACCTTGCTTTCTGCCAATCTTTTTGTTTTTCAGGCTGATGAGCTCCGGAAAAAGTTCGAGGCTAACAAAAATCTGGTATTTTTAATTTATTTTTGGTATAATGTAGGAATTAGGAATTTATTTAACTACATTTAGTCTGAAATTTGCGTTTACTGATTAATACGATATGGTGCAAATTCACATGTTTTTTGATTTTTTTGGGTACCAATTGTTCAAAGTAAGGTTCGATGTCGTGATTAGATGGATGCAGTAGCTGAATTAGAGTGTATGAGTAGTGATATTTGGGATTGACGGTCCTCTGAATATTTTAATGTTTCCATTTGCGATAATCAGTAAATTTGTGTGCTTTTGTATATGAAGATGGTGCAGTTGAATTCAGTTTAGTGCATTTGTATAGGGGAGGGGCGAGTGAGGTTAATTGTTGTAGGCAAACAGGTTTTGGTATTGTTTTTGATTTGATTTGTGTGAATCTTACCGAGATGCTTTTTATGATGTTATAGCAAGATCCTGATGCAATTGACAAAATGATTGCTGTTGGTGAATCTGAGTACAATAAGTGGAGGCACCCTGATCCTTATATTGGTAAGCAATGCATAACCATCGGCTTGTTACATTATTTTTTATTTTCTTTGTGATAGTGTCCCATATACATTGATCTGATTGTCATATATGTTGTATGTGTGTCTTAGCGTTAGTGTGAGACTTCATTGAATGTTTAAGAATCCACTTATTACCTTTGCGACCTTCATTGGCGCAGTGCATTTTAATGAATAGGCTAGTGTAACTTTCACATCATGTTCTGAATGAGGAGTAAGAAGAAAAGGGATACAAGAAAGACCTTTGATCGTTAGTTTGATTTGTACTTTGAGGATAGAATTTGTCTATTTTAGGCAATTCTCTTCAACAGACTACACTAACTGCGAAATCATGGCTAGACTAGTGATTTCTTGGAAATCCTTACGAAGTATAACATTATGTATGGGAAATCCTTCTTTTTGCCTATCAAACCACATATGTAAACAGAGTTTCTTCACTTATCTTTTCTATTGCTCTCCATTTTCCCCTTTGCCCAGCCTATCCATCCCTCTTTATTGCTTGGAGTGGGTAGACTGTGGAGACTGGAGAGTAAGATAAATTATACAGGGATTTCTGGCATACATAAAGTGGGTCAATGTTATTAAGTTTTTTTTATTACAGTTTACATAATGTGAATGCCCTAGTGCACCTGCAGGATAAGTTAATGAAGGGTTGTTTTTGTATCTTATAGTATCGTAACTTGTTTATTATGGACACTCTGTATCTCATGTATTTTCAACCTCCTCTGCAGTTCCATGGGCTCCTGGCGGTTCAAAGTTCTGCAGAAACCCAGAGCCACCTAAAGGGGTATGTGCTCTTCTTGCTCTGGTTTAATAATGTTTTACTTTTTACTTTGGCACAATTATTTTGTTTTTACCTCAGGATACATGCATTTTCTGATTCTTGGCATCCTATTGCTAGTATTTTGCCCGAGTGAAATGGAATGAGAAAATTGCTCTATATCTTGTATTCCAACAATAACTTTTCGGCTATTAGTTAATGTAAATGTAGGCTATTGTGTAATATAGTTCATCACTTGTACCATTGACGGTTTGTGTGAACGTGACTTGATGTGTTTAATATTTGTTAGTACTAAGCTCCAATGGATTCAGATTGTAACTGATATCTACCACTATCAGGCTCCTTTGGTTGATTACAATAATATGTAATATATTGTCCCACATTTTTAGGGCATACTTTTTTTAGGAATCTCCCAAAATAATAGACCACTTTTGATTGTAGTGAGTTAGTTTATGAGTTTTCTAAAATTTTACTTTGTTTAGGTTTTGTTTGTAGTATCATAATAAGATATTTGTTCTCAACAATTGTATAAATTATCAGGAGTGAAGTGGTATTTCGAGCAGAAAATTTTAAAATGATCTTTGACGATTTGACCAAGTGTGGTCTATTAAAGTGGCAAGAAGGGAGTATTGTCGTTCTTTGTGGAATGACAATTCCTCTTTTATGCTTTATCGGAGAAGAAATATCTCGTAAAGACTCTTGCATTTGCAAATACTAGCCGTGGACACCATTCGGTTATATTATTATTATATGATTGTGGCATGATGTAGGACCCATTTTTGCTTTGGTTATACAGAATGTTGTCTCTCTTTTTCGTTTGACCTTAAACTTCACTTGTAACTGTTGGTTGTGCACGTGTGCGTAAGGTTAAGGGTATTTCTATTCAGCTTGTTGATTTGACAAAACAATTTCCCCTTCCTTGCCCCCCATGGAAGGGGGTGGGGGGCATTATTTTTCTCAGTTTTTTATTTTCTTGATCATTGGAGGAAAATTACTTTCAGTTGGTTAGGGCTTTGTGGTGCTGGTTGTTTCCTTTGATTTCATTTTCTGAAGTACCCTTCAGCAGGGTAGGTCGTTGAACAGTTCCCTTGAGTAATTAGGTTGTAATGAATAAAACTGAAGACTGATATTTGCTATGGCAACCCTCAAATCATATTATCTACTTTTCCATAGCTCAATGCTGATATAAGTTTGTTGGTTAATATGGTTTAAATACTTACCGAATACTTTGGAGCATTATTTGGATTTCGTACTTTTTCTTTCTGCTTTGTTACAAAGATCTTGAATTTGATTGGTCCTTAATTTTGAATTCTGATTTCTTCATGCCTTGCGGCTTCATAAATTTGACTAATGCAGATTGAGATTATTTACGACTATGGCCAAGAAGAGGTCGAGCCAAGGTAGCTGCATATCTTTAATGCAGTAAGTAAGGTAATGTGCGTAGTCAACCCTTTTTGCTTCTGAGCTTGTTGACTTAATTTTGAAAGGGAAATTAAGAAGTGATTTGTTTTAAAAACATTTTAACTTAACCTTTGTATTATGATTCTAGTCTTATATGTTGGTCTGACTGGATGTTGCAGATGAAAATTACCCTGGCCGTGGTGGGTAGATAATGATGAAGAGTCATCTTCCCGTTTGCATTTACCTGCGTTTCAAACATTTGAGATATTGAGTTTCTCGTTTTGTAATTTACTTAGGTTGTTTGCAGTCCGCAGTTGATGTTAGCTGTTGGGGAAAATTTGTGCACATGATTTGTTGATCTTCTAAAGAATTGAATAATTTACTCGAATGAAAATAAGTTTGACCTTTCTAAAGGCATCAGCCCATGGGTTTTGTAGTAGCGGATCGGTGGTGGTGACTCAGGATTTTATCCATTTTGACTTAAAGAGTAGCCAGATTGTTAACTCCTAGAATGGTGGGACAGGGAAAACTGTCCTAATTGCCATGAAACCTCATTGTTGTGAAAACACATACAGCTTGACTGCTAGGAAGTTGTCAACACTCGGAGTCTTTAGGCTCACGACGGGAAATGGGAAATGGGAAATGCGAAATGGTTGATGAAACCTGAAAGTTGCGGTAAATTTGAGAATATCTTGTAAAATGATGGTGGTAGAGAATAGACCTGGTTATTGGACAGGGTAGTCCAATGGATATAGGGTTAGTGTCAAGTTAATAGGGCTTTTATTGGGTAGGGCTCTTATTGGACAGGACCTTTATTGGACAGGGTCATTATAGGGTCAAACTTATACTACAATTATTTTGAAAATAAAAATAGTAATGATACAAAAAATTACGTGCATAGCTTCGTATTTAATTGTACTTGCACATGGCTCTTTTGTTTTTCATTTTTCATTGCTCGTTTATTGACCCGCCCACTAATGACCCGCTATTGACCCGCGACCCGCTTTTGACCCGCCTATTATCGACCCTTTAAAAATGACCCTTTCAATACCCGACCCTCTTTTGACCCGCACCGACCCTGACCCGCCCCGCCCGATAACCAGGTCTA

mRNA sequence

GTCAAATTACCAACTCAACAAATAGGTTAGCTAATAGTTAAAGTCCAAGATTAGTTTTATACTATATAACATACCAATTCGCATTCCTACGATCCAAACGCCCCCTACGATCTCAACCTCTATTTCCAATCTCAACCTCTATTTCTCAAATTCGCATTCGTACGATCCAAACGCCACCTTAGGAGACATATGGGTAAATGTCTAAATGATCGGTTGGAACTTAGAACCACAAATGATGAGATGATCCTAATTTACCTTCAGAATTTCATACTCCTACGACGTCGTTGAGTGTAACCCACCCCATTGTTGGTTGCAAATCCTCTCTCTAGAAAGAAAGAATAAAAAAGAAAGAGAGGAAAGTTGAAACAACAAAAACCAGAGGAGAGAGAAAATGAGCTTGTCGACGGCGTCGTTTTTGGCGAGAAGAGCAGCACAGAAACAGAAGGTCCGACTTCTCTACCGCCGTTGTCTCCGGGATACTCTCAATTGGGCCGTTCATCGTCATCTCTTCTACGAAGATGCTGATGAGCTCCGGAAAAAGTTCGAGGCTAACAAAAATCTGCAAGATCCTGATGCAATTGACAAAATGATTGCTGTTGGTGAATCTGAGTACAATAAGTGGAGGCACCCTGATCCTTATATTGTTCCATGGGCTCCTGGCGGTTCAAAGTTCTGCAGAAACCCAGAGCCACCTAAAGGGATTGAGATTATTTACGACTATGGCCAAGAAGAGGTCGAGCCAAGGTAGCTGCATATCTTTAATGCAGTAAGTAAGGTAATATGAAAATTACCCTGGCCGTGGTGGGTAGATAATGATGAAGAGTCATCTTCCCGTTTGCATTTACCTGCGTTTCAAACATTTGAGATATTGAGTTTCTCGTTTTGTAATTTACTTAGGTTGTTTGCAGTCCGCAGTTGATGTTAGCTGTTGGGGAAAATTTGTGCACATGATTTGTTGATCTTCTAAAGAATTGAATAATTTACTCGAATGAAAATAAGTTTGACCTTTCTAAAGGCATCAGCCCATGGGTTTTGTAGTAGCGGATCGGTGGTGGTGACTCAGGATTTTATCCATTTTGACTTAAAGAGTAGCCAGATTGTTAACTCCTAGAATGGTGGGACAGGGAAAACTGTCCTAATTGCCATGAAACCTCATTGTTGTGAAAACACATACAGCTTGACTGCTAGGAAGTTGTCAACACTCGGAGTCTTTAGGCTCACGACGGGAAATGGGAAATGGGAAATGCGAAATGGTTGATGAAACCTGAAAGTTGCGGTAAATTTGAGAATATCTTGTAAAATGATGGTGGTAGAGAATAGACCTGGTTATTGGACAGGGTAGTCCAATGGATATAGGGTTAGTGTCAAGTTAATAGGGCTTTTATTGGGTAGGGCTCTTATTGGACAGGACCTTTATTGGACAGGGTCATTATAGGGTCAAACTTATACTACAATTATTTTGAAAATAAAAATAGTAATGATACAAAAAATTACGTGCATAGCTTCGTATTTAATTGTACTTGCACATGGCTCTTTTGTTTTTCATTTTTCATTGCTCGTTTATTGACCCGCCCACTAATGACCCGCTATTGACCCGCGACCCGCTTTTGACCCGCCTATTATCGACCCTTTAAAAATGACCCTTTCAATACCCGACCCTCTTTTGACCCGCACCGACCCTGACCCGCCCCGCCCGATAACCAGGTCTA

Coding sequence (CDS)

ATGAGCTTGTCGACGGCGTCGTTTTTGGCGAGAAGAGCAGCACAGAAACAGAAGGTCCGACTTCTCTACCGCCGTTGTCTCCGGGATACTCTCAATTGGGCCGTTCATCGTCATCTCTTCTACGAAGATGCTGATGAGCTCCGGAAAAAGTTCGAGGCTAACAAAAATCTGCAAGATCCTGATGCAATTGACAAAATGATTGCTGTTGGTGAATCTGAGTACAATAAGTGGAGGCACCCTGATCCTTATATTGTTCCATGGGCTCCTGGCGGTTCAAAGTTCTGCAGAAACCCAGAGCCACCTAAAGGGATTGAGATTATTTACGACTATGGCCAAGAAGAGGTCGAGCCAAGGTAG

Protein sequence

MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVEPR

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06053.1	Spo06053.1	mRNA

Homology

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BLAST of Spo06053.1 vs. NCBI nr
Match: gi|902236632|gb|KNA24471.1| (hypothetical protein SOVF_015350 [Spinacia oleracea])

HSP 1 Score: 249.6 bits (636), Expect = 2.700e-63
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP
Sbjct: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVEPR 119
           DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVEPR
Sbjct: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVEPR 118

[Close]

BLAST of Spo06053.1 vs. NCBI nr
Match: gi|731358449|ref|XP_010690756.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 221.5 bits (563), Expect = 7.900e-55
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MSLSTAS+LARRAAQKQ+VR+LYR+ LR+TLNWAVHRHLFYEDADELRKKFE NKNLQD 
Sbjct: 1   MSLSTASYLARRAAQKQRVRILYRKALRETLNWAVHRHLFYEDADELRKKFEVNKNLQDL 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVE 117
           DAID+MIA GE+E+NKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIY+YGQEE E
Sbjct: 61  DAIDRMIAAGEAEHNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYNYGQEEAE 116

[Close]

BLAST of Spo06053.1 vs. NCBI nr
Match: gi|747090340|ref|XP_011092854.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 198.7 bits (504), Expect = 5.500e-48
Identity = 88/114 (77.19%), Postives = 104/114 (91.23%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MSL+TAS+LARRAAQK++VR+LYRR L+DTLNWAVHRHLFY DAD LR+KFE N+N++D 
Sbjct: 1   MSLATASYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYPDADALREKFETNRNVEDI 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           + ID+MIA GE+ YNKWRHPDPYIVPWAPGG+KFCRNP PP GIEIIYDYG+E+
Sbjct: 61  ELIDRMIAAGEATYNKWRHPDPYIVPWAPGGTKFCRNPTPPPGIEIIYDYGRED 114

[Close]

BLAST of Spo06053.1 vs. NCBI nr
Match: gi|747082352|ref|XP_011088493.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 195.7 bits (496), Expect = 4.700e-47
Identity = 86/114 (75.44%), Postives = 104/114 (91.23%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MS++TAS+L RRAAQK++VR+LYRR L+DTLNWAVHRHLFY DAD LR+KFEAN+N++D 
Sbjct: 1   MSVATASYLVRRAAQKERVRILYRRALKDTLNWAVHRHLFYPDADALREKFEANRNVEDI 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           + ID+MIA GE+ YNKWRHPDPYIVPWAPGG+KFCRNP PP GIEIIY+YG+E+
Sbjct: 61  ELIDRMIAAGEATYNKWRHPDPYIVPWAPGGTKFCRNPTPPPGIEIIYNYGRED 114

[Close]

BLAST of Spo06053.1 vs. NCBI nr
Match: gi|743793493|ref|XP_011047299.1| (PREDICTED: NADH dehydrogenase [ubiquinone])

HSP 1 Score: 194.9 bits (494), Expect = 7.900e-47
Identity = 85/114 (74.56%), Postives = 104/114 (91.23%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MS++ A +LARRAAQK++VR+LYRR L+DTLNWAVHRHLFYEDAD LR +FE NK+++DP
Sbjct: 1   MSVAAAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYEDADRLRARFENNKHVEDP 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           D ID+MIA GE++YNKWRHPDPYIVPWAPGGSKF RNP PP+GIEI+Y+YG+E+
Sbjct: 61  DTIDRMIADGEAQYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGIEIVYNYGRED 114

[Close]

BLAST of Spo06053.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RY72_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_015350 PE=3 SV=1)

HSP 1 Score: 249.6 bits (636), Expect = 1.900e-63
Identity = 118/118 (100.00%), Postives = 118/118 (100.00%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP
Sbjct: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVEPR 119
           DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVEPR
Sbjct: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVEPR 118

[Close]

BLAST of Spo06053.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BH62_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g216410 PE=3 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.500e-55
Identity = 102/116 (87.93%), Postives = 111/116 (95.69%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MSLSTAS+LARRAAQKQ+VR+LYR+ LR+TLNWAVHRHLFYEDADELRKKFE NKNLQD 
Sbjct: 1   MSLSTASYLARRAAQKQRVRILYRKALRETLNWAVHRHLFYEDADELRKKFEVNKNLQDL 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEEVE 117
           DAID+MIA GE+E+NKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIY+YGQEE E
Sbjct: 61  DAIDRMIAAGEAEHNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYNYGQEEAE 116

[Close]

BLAST of Spo06053.1 vs. UniProtKB/TrEMBL
Match: B9HRF5_POPTR (Complex 1 family protein OS=Populus trichocarpa GN=POPTR_0009s12750g PE=3 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 9.400e-47
Identity = 85/114 (74.56%), Postives = 104/114 (91.23%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MS++ A +LARRAAQK++VR+LYRR L+DTLNWAVHRHLFYEDAD LR +FE NK+++DP
Sbjct: 1   MSVAAAGYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYEDADLLRSRFENNKHVEDP 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           D ID+MI+ GE++YNKWRHPDPYIVPWAPGGSKF RNP PP+GIEI+Y+YG+EE
Sbjct: 61  DTIDRMISDGEAQYNKWRHPDPYIVPWAPGGSKFTRNPTPPEGIEIVYNYGREE 114

[Close]

BLAST of Spo06053.1 vs. UniProtKB/TrEMBL
Match: A0A068TLX8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00014193001 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.200e-46
Identity = 87/114 (76.32%), Postives = 102/114 (89.47%), Query Frame = 1

		  
Query: 1   MSLSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDP 60
           MSL +AS+LARRAAQK++VR+LYRR L+DTLNWAVHRHLFY DAD LR+KFEANK++QD 
Sbjct: 1   MSLGSASYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYPDADALREKFEANKDVQDL 60

Query: 61  DAIDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           + ID+MIA GE  YNKWRHPDPY+VPWAPGGSKF RNP PP GIEI+YDYG+E+
Sbjct: 61  ETIDRMIAAGEVTYNKWRHPDPYVVPWAPGGSKFHRNPTPPSGIEILYDYGRED 114

[Close]

BLAST of Spo06053.1 vs. UniProtKB/TrEMBL
Match: A0A0D2RT13_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G248500 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.600e-46
Identity = 86/111 (77.48%), Postives = 101/111 (90.99%), Query Frame = 1

		  
Query: 4   STASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDAI 63
           STA++LARRAAQK++VR+LYRR L+DTLNWAVHRHLFY+DA +LR+KFEANK+++D D I
Sbjct: 5   STAAYLARRAAQKERVRILYRRALKDTLNWAVHRHLFYQDASDLREKFEANKHVEDLDTI 64

Query: 64  DKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           DKMI  GE+ YNKWRHPDPYIVPWAPGGSKF RNP PP GIEI+YDYG+EE
Sbjct: 65  DKMIDAGEATYNKWRHPDPYIVPWAPGGSKFTRNPVPPSGIEILYDYGREE 115

[Close]

BLAST of Spo06053.1 vs. ExPASy Swiss-Prot
Match: NDUB9_ARATH (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Arabidopsis thaliana GN=CIB22 PE=1 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 7.900e-47
Identity = 81/112 (72.32%), Postives = 100/112 (89.29%), Query Frame = 1

		  
Query: 3   LSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDA 62
           +STA++ ARRAAQK++VR+LYRR L+DTLNWAVHRH+FY DA +LR+KF  N++++D D 
Sbjct: 4   VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVEDVDR 63

Query: 63  IDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           IDK+IA GE+EYNKWRHPDPYIVPWAPGGSKFCRNP PP GIEI+Y+YG E+
Sbjct: 64  IDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLED 115

[Close]

BLAST of Spo06053.1 vs. ExPASy Swiss-Prot
Match: NDUB9_MOUSE (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Mus musculus GN=Ndufb9 PE=1 SV=3)

HSP 1 Score: 62.0 bits (149), Expect = 5.000e-9
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1

		  
Query: 16 KQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDAIDKMIAVGESEYN 75
          +QKV  LY+R LR   +W +HR  +   A  +R +FE +KN +D     +++   E E+ 
Sbjct: 13 QQKVLRLYKRALRHLESWCIHRDKYRYFACLMRARFEEHKNEKDMMRATQLLREAEEEFW 72

Query: 76 KWRHPDPYIVPWAPGGSKFCR 97
          + +HP PYI P +PGG+ F R
Sbjct: 73 QNQHPQPYIFPDSPGGTSFER 93

[Close]

BLAST of Spo06053.1 vs. ExPASy Swiss-Prot
Match: NDUB9_BOVIN (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Bos taurus GN=NDUFB9 PE=1 SV=2)

HSP 1 Score: 60.5 bits (145), Expect = 1.500e-8
Identity = 33/94 (35.11%), Postives = 53/94 (56.38%), Query Frame = 1

		  
Query: 3  LSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDA 62
          LS+ ++L  +    QKV  LY+R LR   +W +HR  +   A  LR +F+ +KN +D   
Sbjct: 4  LSSGAYLTHQ----QKVLRLYKRALRHLESWCIHRDKYRYFACLLRARFDEHKNEKDMVK 63

Query: 63 IDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCR 97
            +++   E E+   +HP PYI P +PGG+ + R
Sbjct: 64 ATQLLREAEEEFWHGQHPQPYIFPESPGGTSYER 93

[Close]

BLAST of Spo06053.1 vs. ExPASy Swiss-Prot
Match: NDUB9_GORGO (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Gorilla gorilla gorilla GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 58.5 bits (140), Expect = 5.600e-8
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 1

		  
Query: 7  SFLA--RRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDAID 66
          +FLA  R    +QKV  LY+R LR   +W V R  +   A  +R +FE +KN +D     
Sbjct: 2  AFLASGRYLTHQQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMAKAT 61

Query: 67 KMIAVGESEYNKWRHPDPYIVPWAPGGSKFCR 97
          +++   E E+   +HP PYI P +PGG+ + R
Sbjct: 62 QLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]

BLAST of Spo06053.1 vs. ExPASy Swiss-Prot
Match: NDUB9_PONAB (NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 OS=Pongo abelii GN=NDUFB9 PE=2 SV=3)

HSP 1 Score: 58.2 bits (139), Expect = 7.300e-8
Identity = 34/92 (36.96%), Postives = 51/92 (55.43%), Query Frame = 1

		  
Query: 7  SFLARRA--AQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDAID 66
          +FLA  A    +QKV  LY+R LR   +W V R  +   A  +R +FE +KN +D     
Sbjct: 2  AFLASGAYLTHRQKVLRLYKRALRHLESWCVQRDKYRYFACLMRARFEEHKNEKDMVRAT 61

Query: 67 KMIAVGESEYNKWRHPDPYIVPWAPGGSKFCR 97
          +++   E E+   +HP PYI P +PGG+ + R
Sbjct: 62 QLLKEAEEEFWYRQHPQPYIFPDSPGGTSYER 93

[Close]

BLAST of Spo06053.1 vs. TAIR (Arabidopsis)
Match: AT4G34700.1 (LYR family of Fe/S cluster biogenesis protein)

HSP 1 Score: 187.6 bits (475), Expect = 4.500e-48
Identity = 81/112 (72.32%), Postives = 100/112 (89.29%), Query Frame = 1

		  
Query: 3   LSTASFLARRAAQKQKVRLLYRRCLRDTLNWAVHRHLFYEDADELRKKFEANKNLQDPDA 62
           +STA++ ARRAAQK++VR+LYRR L+DTLNWAVHRH+FY DA +LR+KF  N++++D D 
Sbjct: 4   VSTAAYFARRAAQKERVRILYRRALKDTLNWAVHRHIFYRDASDLREKFNVNQDVEDVDR 63

Query: 63  IDKMIAVGESEYNKWRHPDPYIVPWAPGGSKFCRNPEPPKGIEIIYDYGQEE 115
           IDK+IA GE+EYNKWRHPDPYIVPWAPGGSKFCRNP PP GIEI+Y+YG E+
Sbjct: 64  IDKLIAHGEAEYNKWRHPDPYIVPWAPGGSKFCRNPTPPAGIEIVYNYGLED 115

The following BLAST results are available for this feature:

BLAST of Spo06053.1 vs. NCBI nr
BLAST of Spo06053.1 vs. UniProtKB/TrEMBL
BLAST of Spo06053.1 vs. ExPASy Swiss-Prot
BLAST of Spo06053.1 vs. TAIR (Arabidopsis)

BLAST of Spo06053.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902236632\|gb\|KNA24471.1\|	2.7e-63	100.	hypothetical protein SOVF_0153...	[more]
gi\|731358449\|ref\|XP_010690756.1\|	7.9e-55	87.9	PREDICTED: NADH dehydrogenase ...	[more]
gi\|747090340\|ref\|XP_011092854.1\|	5.5e-48	77.1	PREDICTED: NADH dehydrogenase ...	[more]
gi\|747082352\|ref\|XP_011088493.1\|	4.7e-47	75.4	PREDICTED: NADH dehydrogenase ...	[more]
gi\|743793493\|ref\|XP_011047299.1\|	7.9e-47	74.5	PREDICTED: NADH dehydrogenase ...	[more]

BLAST of Spo06053.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RY72_SPIOL	1.9e-63	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BH62_BETVU	5.5e-55	87.9	Uncharacterized protein OS=Bet...	[more]
B9HRF5_POPTR	9.4e-47	74.5	Complex 1 family protein OS=Po...	[more]
A0A068TLX8_COFCA	1.2e-46	76.3	Uncharacterized protein OS=Cof...	[more]
A0A0D2RT13_GOSRA	1.6e-46	77.4	Uncharacterized protein OS=Gos...	[more]

BLAST of Spo06053.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
NDUB9_ARATH	7.9e-47	72.3	NADH dehydrogenase [ubiquinone...	[more]
NDUB9_MOUSE	5.0e-9	38.2	NADH dehydrogenase [ubiquinone...	[more]
NDUB9_BOVIN	1.5e-8	35.1	NADH dehydrogenase [ubiquinone...	[more]
NDUB9_GORGO	5.6e-8	36.9	NADH dehydrogenase [ubiquinone...	[more]
NDUB9_PONAB	7.3e-8	36.9	NADH dehydrogenase [ubiquinone...	[more]

BLAST of Spo06053.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT4G34700.1	4.5e-48	72.3	LYR family of Fe/S cluster bio...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 18..73 score: 4.6
None	No IPR available	PANTHER	PTHR12868	NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT	coord: 3..114 score: 4.6

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0007033	vacuole organization
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0009853	photorespiration
biological_process	GO:0008152	metabolic process
biological_process	GO:0043248	proteasome assembly
biological_process	GO:0019521	D-gluconate metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006096	glycolytic process
biological_process	GO:0080129	proteasome core complex assembly
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0007030	Golgi organization
biological_process	GO:0006782	protoporphyrinogen IX biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0001510	RNA methylation
biological_process	GO:0042545	cell wall modification
biological_process	GO:0006412	translation
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016049	cell growth
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005839	proteasome core complex
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000502	proteasome complex
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005618	cell wall
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0050661	NADP binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004298	threonine-type endopeptidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0004853	uroporphyrinogen decarboxylase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0004616	phosphogluconate dehydrogenase (decarboxylating) activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo05731	0.77	Barchart \| Table
Spo25230	0.76	Barchart \| Table
Spo27102	0.74	Barchart \| Table
Spo09674	0.73	Barchart \| Table
Spo09752	0.73	Barchart \| Table
Spo06432	0.73	Barchart \| Table
Spo27374	0.72	Barchart \| Table
Spo23071	0.72	Barchart \| Table
Spo24590	0.71	Barchart \| Table
Spo23148	0.71	Barchart \| Table
Spo19874	0.70	Barchart \| Table
Spo02085	0.70	Barchart \| Table
Spo08772	0.70	Barchart \| Table
Spo14084	0.70	Barchart \| Table
Spo08197	0.70	Barchart \| Table
Spo06465	0.70	Barchart \| Table
Spo19172	0.70	Barchart \| Table
Spo08799	0.69	Barchart \| Table
Spo12376	0.69	Barchart \| Table
Spo22955	0.69	Barchart \| Table
Spo05990	0.69	Barchart \| Table
Spo22760	0.68	Barchart \| Table
Spo14980	0.68	Barchart \| Table
Spo15087	0.68	Barchart \| Table
Spo06314	0.68	Barchart \| Table
Spo02068	0.68	Barchart \| Table
Spo25838	0.67	Barchart \| Table
Spo04254	0.67	Barchart \| Table
Spo05341	0.67	Barchart \| Table
Spo05531	0.67	Barchart \| Table
Spo22052	0.67	Barchart \| Table
Spo23123	0.67	Barchart \| Table
Spo01914	0.67	Barchart \| Table
Spo03867	0.67	Barchart \| Table
Spo07619	0.67	Barchart \| Table
Spo08997	0.67	Barchart \| Table
Spo11543	0.67	Barchart \| Table
Spo13107	0.67	Barchart \| Table
Spo30013	0.67	Barchart \| Table
Spo14942	0.67	Barchart \| Table
Spo23518	0.66	Barchart \| Table
Spo01397	0.66	Barchart \| Table
Spo02407	0.66	Barchart \| Table
Spo06962	0.66	Barchart \| Table
Spo07390	0.66	Barchart \| Table
Spo09604	0.66	Barchart \| Table
Spo11911	0.66	Barchart \| Table
Spo13490	0.66	Barchart \| Table
Spo15420	0.66	Barchart \| Table
Spo17386	0.66	Barchart \| Table
Spo20071	0.66	Barchart \| Table
Spo20686	0.66	Barchart \| Table
Spo21691	0.66	Barchart \| Table
Spo00615	0.66	Barchart \| Table
Spo01261	0.65	Barchart \| Table
Spo15149	0.65	Barchart \| Table
Spo12364	0.65	Barchart \| Table
Spo07586	0.65	Barchart \| Table
Spo25908	0.65	Barchart \| Table
Spo05728	0.65	Barchart \| Table
Spo01437	0.65	Barchart \| Table
Spo15426	0.65	Barchart \| Table