Spo06060 (gene) | SpinachBase

Overview


Name	Spo06060
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	50S ribosomal protein L35
Location	chr2 : 12566380 .. 12570447 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TATTACAATAATTTTTAGCCGTCATACGTGGACTCGCACGTATGACGTGGGCACCGACGTGACACGTACGCATCATCATATCTTCACATTCCAAACTTCTATCCCCATATCCACAAACTCAAACCTCCATTACTCTACTCTCCCAAGCTCACTCACTCTCTCTCTCTCTGTTTCTTGCTCTCCTCTGAACAACTGGTTTTGGCACAACCATAATGGCAATGGCTTCCGCAACAGCAACACTGTCATTCAAAACCCCATCTCTTTCTCTCTCTCCTCCCTCAACTCGATGCTCTGCAGCTCAAGGCATTTCTCTTACGCATTTCAACAAACAGCTTAAGAGCACTCTCAACCTTAGCTCTTCCAGCAGCATTTCATCTTCTAAGCTTCAACCTATTGTTCTTAAGAATAAGAGAATCTCCACCGTCGATTCTTCTGTCTCTACTTCTTCTCCTTCTTTCACTGTTTTCGCTGCTAAAGGGTACAAGATGAAGACCCACAAGGTCCATTATTTCTCTCTTATCTCCGAATTTTTACTGGGTTTTGGTTAATAGAGTGATTTGGGGTTTGGTTTCTTATTAAAGTCGTTAATTGCGTGTTCTATTTGGTAAATTTTGAATAATTGTAGGTCAATTATGGCTTTCTCTATTTTATTTCTTTGGTTAATTGGGTGATTTGGGTGGTGAGGTTCTTGTATACTGTTTTTTATTTGGTGAATTTTGAATCAGTTTAGGTCAATTCTCCCTCTTTTCTGGTTTTGGGTAATTTGGATTAGTGGCAGTCTTGAATAATTGGTTAAATGTGTGTTATAATTGGTGAATTTGAATAATTGTAGGCCTCAGCAAAGAGATTTAGGGTAACTGGAAAGGGGAAGATTGTGAGGAGGAGAGCTGGGAAGCAGCATCTTCTCGCCAAGAAGAACACTAAGAGGAAGAATCGTCTCTCCAAATTGGTATTCATCTCTCTATTTTCATGCTAATATACATTTTTAGACTTGTGTGTTTGAAACTTAAGCAATCTTTTAGTAATTGGTTCTCTACTGAACACCATAGTTGGTATGCTGTTATTGAACTTGATGTATGGCTTGTTTGAACATAATCTAAGCTCCATCCTTGTGAAACTGCACTACATTACTCGGGTGCGTTGAAAGTCTATTTAGCATAAGAACAGGAAATTCTGATTGTGTCTCTTCGATTCTTTGTGATCCTTTTGGCTGTGTTAACTTAAATGGTACATTAGTACTCCCTCTGTCTGCATGCCTTTGCATGGATGCTGAATTGCTGATGTAGAAGAAATTTATGTCTTCGGTATCTACTATGACTGTCTCTGTGTATAATTGTCTTTTTAGCATTTTTTTTATCCTAACTTTATCATGTTATGTTTCGGTTTTCCATGTGGTCTACATTTGCTTCTCTTTCATTTGTGTCAGTATAATCTGTGTGATTATACATTATGGGTATGTGAAGATTGGCATGATGTTAGCAAACCCTTCAGTGTTGACTTGCACTTTATGACAATAGTGTTAAGGGAATTGGGCTATAAAATCGCCGGCTAATGGTGAAAGTCTCGTGTTGTATGAATTTTGAGCCTTTGTTTTTAGTTTTATATTTGAAGATTGACATGCTGTAGAAGTCTCATCTTGGTGTTTCTTTTTCAAGTTGATATGGTCTTTCTTAATCTCTTTTCTTTGGAAGGGATCTTGGCTTGAAGGCTAAGTGTATGTGCCGAACTAGTTTATGATGTTTAAGCAGTCTGATAGTAGTTGAGGATAAGTTGAAGATAAATGGAAGTTCTCAGGACCTTGGTTTATTCACTTGCTTCATAAGATTTAGGGATGGTGGTAATGACATATTGCACTTTGCACTGCCATCAGGTAGTAATAGTATTGCAAAAGATTTTGTCAATTAAGTATGCATTGTTCTTCTCATGTCTTTATTACCATGAAGGGAGTTTGGAATGAGCTGTAATCAAAACGACAGAAGAAAACAACATATTTTCTTATGTGGATGCATTAGATTGGACCGTTGAGAATAAAAATGTATGCTTAGTGTAAAGGGTTTGATGACTTTGATCGCAAAATTAGACATGCTTCAATACCATTTGAATTATTTATTACCTCAACTAAATAGGTTGAACGAAAGAGTGTGATGATATCAACTTTGTCGGAGAAGCCAAATAAATTTTGGAAAGGACTCCTATATATAAGCGAGCAAGGCATAAGTAAGCATCATACAAACATGAAACATGTGGGATCGGTTATGTATATAGGAGAACATGACAAATAGGATGCATCACTTTAGAAGCTTCTGGTTAGTTTTAAACGGCTCACATAATATGCGGCCCCTTCATTAAGCATCATTATTCACTGCTTTCAAGGTTGTATATCTTGACAAAATGTACCTGTTATATGAAGGACTTTTGGGAATGTCCCATCCTAAAACCCATACGAACCTCATATCAAGTTGGGCTTTTTGAATGACCTGTTTCCTCAAATCATTCTGATTTTTTCATGTAATTCTCATATCAACTCCTACTTAAGTCCCTTGGGGTATTGGATCAATAGTGGCTAATAAGGACATATTCTTTTATTTTCCTTACAATTTATCAAATTTCCAATTCCCTTCTGTTTGGCTGAGGCCATACATTAGGGGAGCCGGGACAAATCATAAGGTGAAAGCAATAAGTGTCTGTAATGCTGTGATGCTGAAGAGAGTCCTTTTCTTTCTTTTCTAAAAATCTTTTCCTTATAGAATAAGAATTCGAAACAAAAGTGAGTCCTCTACTGTAAGATTTGTTACTTAATGGATCAATAAGGTTGAATTCGAGATCAATGATCTTACAAACAGTTTGTTGAATCAGTGTCTTGGCGTACAGAACCAAGGCCTCCGTACACTACTGCAGAATGTTTCTCATTTTGACTAGTCTCTTGGTGACACTTACCTAATTTGCTAGTATAAGATTGGGTACGGGTTCACAATTCCCTACCTAATTTGTTAAATTAGGCAAAAAGTTTACCGCTTTAATTATATACTTCTCCTTACGGTCCGCGTTTTGCGCGAGGATTAGGGAATAACATTGGTCTTCCATCAGTTTCAGGACATGGATAAACTTTCTTTAGATTTTCTCTTTAGAGGCCTTTTGTGAAGTTGACCTGTTTCTAATTTTTTTCATTTTCCCCTTGTTGAGCTGTTGAAACTATAGATATTTTTTTTTTTTTTTTTGTGAATTGAATGTGAGCATGTCCTGGGTGAGATGGTCTCACATAAATTTATTCTGAGACAATCTTATAATACATTTGCTACAGAATGTTGATTTTGCTGTCCCCTTGCTGAGTTTCTGAAAGCCTGAAACTAGTGAATGTTGTTTCAGACCTTTATTCTTTGATTTTGCTTTCACTGTGTGTGATCCTGAATCTAACACTCTCTTATTTTAATGCTTAGATTCAAGTTGATAGGAGTGATTATGACAATGTGATCGGCGCATTGCCCTACCTGAAAGTAAACAGGAAAGTATAATGGAAGCAACATTTCCATCAAAGACTCAGCAAAGTTTCTCTCCCTCTTGTAATTTCGAATCATGTTTAGCAATTATGCTGTTAATTCTAGCTAATCGATCATTTACATCCAAGATTTTGTTAGTTCTTCTCTTTCAGCATGTTCATGTAACCAAATGATTATTTCTGGAGCAAGTTCTTTTGTGGCTTAGTACAATATTGCTTATGCTTGAAAGTTGTAACCAAATGAATCAAAGTCCAACAGATATGTGAAGCAGCTTTTACTGTAAGTCTGTCCGAGAAAGTATACCCCGATTTCAGCAAACTCGCCTTTTTTTTCTCCTGAAATCCTCATCTATTTTATGCTTGTGTCAAAAATTCCCCTAAAAAAAGGTTGTTTTGAGGGGGCTATGAAGGGGAATTTTCGACACATGAAGAGCGATTTCCGAATAAAATGCTATTGAGTATTGAGGTAGTTCAACAACCGACGTCCGTACAGAACAAATAGAACAATAATATCTAGTATCCTGTGTGTACGATAAAATTATTGTACAGAGTACATCCTTTATTAGTGGGAT

mRNA sequence

TATTACAATAATTTTTAGCCGTCATACGTGGACTCGCACGTATGACGTGGGCACCGACGTGACACGTACGCATCATCATATCTTCACATTCCAAACTTCTATCCCCATATCCACAAACTCAAACCTCCATTACTCTACTCTCCCAAGCTCACTCACTCTCTCTCTCTCTGTTTCTTGCTCTCCTCTGAACAACTGGTTTTGGCACAACCATAATGGCAATGGCTTCCGCAACAGCAACACTGTCATTCAAAACCCCATCTCTTTCTCTCTCTCCTCCCTCAACTCGATGCTCTGCAGCTCAAGGCATTTCTCTTACGCATTTCAACAAACAGCTTAAGAGCACTCTCAACCTTAGCTCTTCCAGCAGCATTTCATCTTCTAAGCTTCAACCTATTGTTCTTAAGAATAAGAGAATCTCCACCGTCGATTCTTCTGTCTCTACTTCTTCTCCTTCTTTCACTGTTTTCGCTGCTAAAGGGTACAAGATGAAGACCCACAAGGCCTCAGCAAAGAGATTTAGGGTAACTGGAAAGGGGAAGATTGTGAGGAGGAGAGCTGGGAAGCAGCATCTTCTCGCCAAGAAGAACACTAAGAGGAAGAATCGTCTCTCCAAATTGATTCAAGTTGATAGGAGTGATTATGACAATGTGATCGGCGCATTGCCCTACCTGAAAGTAAACAGGAAAGTATAATGGAAGCAACATTTCCATCAAAGACTCAGCAAAGTTTCTCTCCCTCTTGTAATTTCGAATCATGTTTAGCAATTATGCTGTTAATTCTAGCTAATCGATCATTTACATCCAAGATTTTGTTAGTTCTTCTCTTTCAGCATGTTCATGTAACCAAATGATTATTTCTGGAGCAAGTTCTTTTGTGGCTTAGTACAATATTGCTTATGCTTGAAAGTTGTAACCAAATGAATCAAAGTCCAACAGATATGTGAAGCAGCTTTTACTGTAAGTCTGTCCGAGAAAGTATACCCCGATTTCAGCAAACTCGCCTTTTTTTTCTCCTGAAATCCTCATCTATTTTATGCTTGTGTCAAAAATTCCCCTAAAAAAAGGTTGTTTTGAGGGGGCTATGAAGGGGAATTTTCGACACATGAAGAGCGATTTCCGAATAAAATGCTATTGAGTATTGAGGTAGTTCAACAACCGACGTCCGTACAGAACAAATAGAACAATAATATCTAGTATCCTGTGTGTACGATAAAATTATTGTACAGAGTACATCCTTTATTAGTGGGAT

Coding sequence (CDS)

ATGGCAATGGCTTCCGCAACAGCAACACTGTCATTCAAAACCCCATCTCTTTCTCTCTCTCCTCCCTCAACTCGATGCTCTGCAGCTCAAGGCATTTCTCTTACGCATTTCAACAAACAGCTTAAGAGCACTCTCAACCTTAGCTCTTCCAGCAGCATTTCATCTTCTAAGCTTCAACCTATTGTTCTTAAGAATAAGAGAATCTCCACCGTCGATTCTTCTGTCTCTACTTCTTCTCCTTCTTTCACTGTTTTCGCTGCTAAAGGGTACAAGATGAAGACCCACAAGGCCTCAGCAAAGAGATTTAGGGTAACTGGAAAGGGGAAGATTGTGAGGAGGAGAGCTGGGAAGCAGCATCTTCTCGCCAAGAAGAACACTAAGAGGAAGAATCGTCTCTCCAAATTGATTCAAGTTGATAGGAGTGATTATGACAATGTGATCGGCGCATTGCCCTACCTGAAAGTAAACAGGAAAGTATAA

Protein sequence

MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06060.1	Spo06060.1	mRNA

Homology

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BLAST of Spo06060.1 vs. NCBI nr
Match: gi|132918|sp|P23326.1|RK35_SPIOL (RecName: Full=50S ribosomal protein L35, chloroplastic; AltName: Full=CL35; Flags: Precursor)

HSP 1 Score: 285.0 bits (728), Expect = 7.900e-74
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1

		  
Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSK+QP
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 160
           LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 159

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BLAST of Spo06060.1 vs. NCBI nr
Match: gi|870851445|gb|KMT03492.1| (hypothetical protein BVRB_8g191720 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 227.6 bits (579), Expect = 1.500e-56
Identity = 134/162 (82.72%), Postives = 142/162 (87.65%), Query Frame = 1

		  
Query: 1   MAMASATAT-LSFKTPSL---SLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSS 60
           MAMASAT T LS K+ S    SLSPP TRC+ A+GISLTHFNK L +TL L+SS SISSS
Sbjct: 1   MAMASATTTILSLKSSSFQTSSLSPPITRCTTAKGISLTHFNKHLNNTLKLTSSHSISSS 60

Query: 61  KLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120
            LQPI L+N RISTVDS  STSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG
Sbjct: 61  VLQPISLQN-RISTVDSPTSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120

Query: 121 KQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KQHLLAKKNTKRK RLSK++QVDRSDYDNVIGALPYLKVNRK
Sbjct: 121 KQHLLAKKNTKRKTRLSKMVQVDRSDYDNVIGALPYLKVNRK 161

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BLAST of Spo06060.1 vs. NCBI nr
Match: gi|731352939|ref|XP_010687804.1| (PREDICTED: nuclear pore complex protein NUP43 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 227.6 bits (579), Expect = 1.500e-56
Identity = 134/162 (82.72%), Postives = 142/162 (87.65%), Query Frame = 1

		  
Query: 1   MAMASATAT-LSFKTPSL---SLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSS 60
           MAMASAT T LS K+ S    SLSPP TRC+ A+GISLTHFNK L +TL L+SS SISSS
Sbjct: 381 MAMASATTTILSLKSSSFQTSSLSPPITRCTTAKGISLTHFNKHLNNTLKLTSSHSISSS 440

Query: 61  KLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120
            LQPI L+N RISTVDS  STSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG
Sbjct: 441 VLQPISLQN-RISTVDSPTSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 500

Query: 121 KQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KQHLLAKKNTKRK RLSK++QVDRSDYDNVIGALPYLKVNRK
Sbjct: 501 KQHLLAKKNTKRKTRLSKMVQVDRSDYDNVIGALPYLKVNRK 541

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BLAST of Spo06060.1 vs. NCBI nr
Match: gi|357479955|ref|XP_003610263.1| (50S ribosomal protein L35 [Medicago truncatula])

HSP 1 Score: 147.5 bits (371), Expect = 2.000e-32
Identity = 99/158 (62.66%), Postives = 115/158 (72.78%), Query Frame = 1

		  
Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MA+ASATAT+S    +L LSPPST    +     + F+  + S L L+ S SIS+    P
Sbjct: 1   MALASATATVS-SFAALRLSPPSTSTRVSFSSVKSPFSNNVNS-LKLNWSCSISA----P 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           I+ +N  I      V+TS  S T+ +AKGYKMKTHKASAKRFRVTG GKIVRRRAGKQHL
Sbjct: 61  ILNQNHSI------VTTSPRSLTIVSAKGYKMKTHKASAKRFRVTGAGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           L KKN KRK RLSK+IQV+RSDYDNVIGALPYLKVNRK
Sbjct: 121 LYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRK 146

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BLAST of Spo06060.1 vs. NCBI nr
Match: gi|747065451|ref|XP_011079364.1| (PREDICTED: 50S ribosomal protein L35, chloroplastic [Sesamum indicum])

HSP 1 Score: 145.6 bits (366), Expect = 7.500e-32
Identity = 92/154 (59.74%), Postives = 109/154 (70.78%), Query Frame = 1

		  
Query: 4   ASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPIVL 63
           A+  AT  F     + SP   + +AA   + T F K+  S+LNLSSS SIS   L+P+VL
Sbjct: 3   AATMATTGFSFGLKTFSPRREKRTAAVAFTFTPFIKKQASSLNLSSSHSISG--LRPLVL 62

Query: 64  KNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAK 123
              +  T    V  +S   TV  AKGYKMKTHKASAKRFRV+G GKI+RRRAGKQHLL K
Sbjct: 63  S--KTLTATGPVQRNSLPLTVVCAKGYKMKTHKASAKRFRVSGSGKIMRRRAGKQHLLRK 122

Query: 124 KNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNR 158
           KNTKR+ RLSK++QVDRSDY+NVIGALPYLKVNR
Sbjct: 123 KNTKRRLRLSKMVQVDRSDYNNVIGALPYLKVNR 152

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BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RCY8_SPIOL (50S ribosomal protein L35 OS=Spinacia oleracea GN=SOVF_080710 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 5.500e-74
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1

		  
Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSK+QP
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 160
           LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 159

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BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BQL1_BETVU (50S ribosomal protein L35 OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191720 PE=3 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.000e-56
Identity = 134/162 (82.72%), Postives = 142/162 (87.65%), Query Frame = 1

		  
Query: 1   MAMASATAT-LSFKTPSL---SLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSS 60
           MAMASAT T LS K+ S    SLSPP TRC+ A+GISLTHFNK L +TL L+SS SISSS
Sbjct: 1   MAMASATTTILSLKSSSFQTSSLSPPITRCTTAKGISLTHFNKHLNNTLKLTSSHSISSS 60

Query: 61  KLQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120
            LQPI L+N RISTVDS  STSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG
Sbjct: 61  VLQPISLQN-RISTVDSPTSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAG 120

Query: 121 KQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KQHLLAKKNTKRK RLSK++QVDRSDYDNVIGALPYLKVNRK
Sbjct: 121 KQHLLAKKNTKRKTRLSKMVQVDRSDYDNVIGALPYLKVNRK 161

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BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: B7FGY3_MEDTR (50S ribosomal protein L35 OS=Medicago truncatula GN=MTR_4g130300 PE=2 SV=1)

HSP 1 Score: 147.5 bits (371), Expect = 1.400e-32
Identity = 99/158 (62.66%), Postives = 115/158 (72.78%), Query Frame = 1

		  
Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MA+ASATAT+S    +L LSPPST    +     + F+  + S L L+ S SIS+    P
Sbjct: 1   MALASATATVS-SFAALRLSPPSTSTRVSFSSVKSPFSNNVNS-LKLNWSCSISA----P 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           I+ +N  I      V+TS  S T+ +AKGYKMKTHKASAKRFRVTG GKIVRRRAGKQHL
Sbjct: 61  ILNQNHSI------VTTSPRSLTIVSAKGYKMKTHKASAKRFRVTGAGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           L KKN KRK RLSK+IQV+RSDYDNVIGALPYLKVNRK
Sbjct: 121 LYKKNKKRKLRLSKMIQVNRSDYDNVIGALPYLKVNRK 146

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BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: A0A068U3V4_COFCA (50S ribosomal protein L35 OS=Coffea canephora GN=GSCOC_T00041250001 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.400e-31
Identity = 95/155 (61.29%), Postives = 113/155 (72.90%), Query Frame = 1

		  
Query: 5   SATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPIVLK 64
           S T T+ F   SL +  P       + + L+ F K  K++LNLSS+ SIS     P+VL 
Sbjct: 7   SRTTTMVF---SLGIKGPQQH-HPVRTVHLSPFAK--KTSLNLSSTCSISG--FTPVVLN 66

Query: 65  NKRISTVDSSVSTSSPSF-TVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAK 124
             R+STV S    S+P F T+  AKGYKMKTHKASAKRFRV+G GKI+RRRAGKQHLLAK
Sbjct: 67  --RLSTVASPSQISNPQFLTIVCAKGYKMKTHKASAKRFRVSGSGKIMRRRAGKQHLLAK 126

Query: 125 KNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           KNTKRK RLSK++QVD+SDY+NVIGALPYLKVNRK
Sbjct: 127 KNTKRKLRLSKMVQVDQSDYNNVIGALPYLKVNRK 151

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BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Match: V4U1U3_9ROSI (50S ribosomal protein L35 OS=Citrus clementina GN=CICLE_v10009792mg PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.400e-31
Identity = 90/151 (59.60%), Postives = 113/151 (74.83%), Query Frame = 1

		  
Query: 10  LSFKTPSLSLSPPSTRCSAAQGISLT-HFNKQLKSTLNLSSSSSISSSKLQPIVLKNKRI 69
           +SF      L P S+   A++G SL    + +L ++L L+SS SIS+S   P++ ++  +
Sbjct: 5   ISFNLKFCPLCPSSSSVRASRGSSLRLALSNKLNNSLRLNSSYSISAS---PLLFRHNNL 64

Query: 70  STVDSSVSTSSP-SFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTK 129
            T   +V+ + P + TVFAAKGYKMKTHKASAKRFRVTGKGKI+RRRAGKQHLLAKKNTK
Sbjct: 65  PT---TVTQNRPQTVTVFAAKGYKMKTHKASAKRFRVTGKGKILRRRAGKQHLLAKKNTK 124

Query: 130 RKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           RK RLSK+ +V RSDYDNVIG LPYLKVNR+
Sbjct: 125 RKLRLSKMHEVSRSDYDNVIGCLPYLKVNRQ 149

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BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RK35_SPIOL (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea GN=RPL35 PE=1 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.900e-76
Identity = 158/159 (99.37%), Postives = 159/159 (100.00%), Query Frame = 1

		  
Query: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQP 60
           MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSK+QP
Sbjct: 1   MAMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKVQP 60

Query: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120
           IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL
Sbjct: 61  IVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHL 120

Query: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 160
           LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV
Sbjct: 121 LAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRKV 159

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BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RK35_ARATH (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana GN=RPL35 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.700e-31
Identity = 95/157 (60.51%), Postives = 109/157 (69.43%), Query Frame = 1

		  
Query: 2   AMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPI 61
           +++ A+  +SF  P  S SP  +  S+       HF        +LSSS SIS  +    
Sbjct: 3   SLSMASVNVSFCHPLRSSSPKVSLRSSV------HF------ATSLSSSHSISGLRA--- 62

Query: 62  VLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLL 121
           VL  K ISTV S  S    SFTVFA KGYKMKTHKASAKRFRVTG+GKIVRRR+GKQHLL
Sbjct: 63  VLPLK-ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLL 122

Query: 122 AKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           AKKN KRK RLSK+ +V+RSDYDNVIGALPYLKVNRK
Sbjct: 123 AKKNNKRKLRLSKMTEVNRSDYDNVIGALPYLKVNRK 143

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BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RL35_ANAVT (50S ribosomal protein L35 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.100e-10
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1

		  
Query: 91  KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGAL 150
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SK+  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 151 PYL 154
           PYL
Sbjct: 63  PYL 65

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BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RL35_NOSS1 (50S ribosomal protein L35 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=rpmI PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.100e-10
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 1

		  
Query: 91  KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGAL 150
           K+KT KA+AKRFR TG GKIVRR+A K HLL  K T +K + SK+  V+  D +NV   L
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAFKNHLLEHKTTNKKRQFSKMAIVNERDEENVRLML 62

Query: 151 PYL 154
           PYL
Sbjct: 63  PYL 65

[Close]

BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Match: RL35_CYAP4 (50S ribosomal protein L35 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=rpmI PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.000e-9
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1

		  
Query: 91  KMKTHKASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGAL 150
           K+KT KA+AKRFR TG GK  RR+A + HLL  K+T RKN+LS +  VD  D + V   L
Sbjct: 3   KLKTRKAAAKRFRQTGTGKFTRRKANRNHLLEHKSTARKNKLSHMAIVDERDEERVSLML 62

Query: 151 PYL 154
           PYL
Sbjct: 63  PYL 65

[Close]

BLAST of Spo06060.1 vs. TAIR (Arabidopsis)
Match: AT2G24090.1 (Ribosomal protein L35)

HSP 1 Score: 136.0 bits (341), Expect = 2.100e-32
Identity = 95/157 (60.51%), Postives = 109/157 (69.43%), Query Frame = 1

		  
Query: 2   AMASATATLSFKTPSLSLSPPSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKLQPI 61
           +++ A+  +SF  P  S SP  +  S+       HF        +LSSS SIS  +    
Sbjct: 3   SLSMASVNVSFCHPLRSSSPKVSLRSSV------HF------ATSLSSSHSISGLRA--- 62

Query: 62  VLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQHLL 121
           VL  K ISTV S  S    SFTVFA KGYKMKTHKASAKRFRVTG+GKIVRRR+GKQHLL
Sbjct: 63  VLPLK-ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLL 122

Query: 122 AKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKVNRK 159
           AKKN KRK RLSK+ +V+RSDYDNVIGALPYLKVNRK
Sbjct: 123 AKKNNKRKLRLSKMTEVNRSDYDNVIGALPYLKVNRK 143

The following BLAST results are available for this feature:

BLAST of Spo06060.1 vs. NCBI nr
BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
BLAST of Spo06060.1 vs. TAIR (Arabidopsis)

BLAST of Spo06060.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|132918\|sp\|P23326.1\|RK35_SPIOL	7.9e-74	99.3	RecName: Full=50S ribosomal pr...	[more]
gi\|870851445\|gb\|KMT03492.1\|	1.5e-56	82.7	hypothetical protein BVRB_8g19...	[more]
gi\|731352939\|ref\|XP_010687804.1\|	1.5e-56	82.7	PREDICTED: nuclear pore comple...	[more]
gi\|357479955\|ref\|XP_003610263.1\|	2.0e-32	62.6	50S ribosomal protein L35 [Med...	[more]
gi\|747065451\|ref\|XP_011079364.1\|	7.5e-32	59.7	PREDICTED: 50S ribosomal prote...	[more]

BLAST of Spo06060.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9RCY8_SPIOL	5.5e-74	99.3	50S ribosomal protein L35 OS=S...	[more]
A0A0J8BQL1_BETVU	1.0e-56	82.7	50S ribosomal protein L35 OS=B...	[more]
B7FGY3_MEDTR	1.4e-32	62.6	50S ribosomal protein L35 OS=M...	[more]
A0A068U3V4_COFCA	3.4e-31	61.2	50S ribosomal protein L35 OS=C...	[more]
V4U1U3_9ROSI	4.4e-31	59.6	50S ribosomal protein L35 OS=C...	[more]

BLAST of Spo06060.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
RK35_SPIOL	4.9e-76	99.3	50S ribosomal protein L35, chl...	[more]
RK35_ARATH	3.7e-31	60.5	50S ribosomal protein L35, chl...	[more]
RL35_ANAVT	6.1e-10	57.1	50S ribosomal protein L35 OS=A...	[more]
RL35_NOSS1	6.1e-10	57.1	50S ribosomal protein L35 OS=N...	[more]
RL35_CYAP4	1.0e-9	55.5	50S ribosomal protein L35 OS=C...	[more]

BLAST of Spo06060.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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x 1


Match Name	E-value	Identity	Description
AT2G24090.1	2.1e-32	60.5	Ribosomal protein L35	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001706	Ribosomal protein L35, non-mitochondrial	PRINTS	PR00064	RIBOSOMALL35	coord: 124..142 score: 2.4E-20coord: 109..123 score: 2.4E-20coord: 91..108 score: 2.4
IPR001706	Ribosomal protein L35, non-mitochondrial	HAMAP	MF_00514	Ribosomal_L35	coord: 89..152 score: 15
IPR001706	Ribosomal protein L35, non-mitochondrial	TIGRFAMs	TIGR00001	TIGR00001	coord: 90..152 score: 8.1
IPR018265	Ribosomal protein L35, conserved site	PROSITE	PS00936	RIBOSOMAL_L35	coord: 93..119 scor
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 90..146 score: 7.5
None	No IPR available	PANTHER	PTHR33343	FAMILY NOT NAMED	coord: 81..159 score: 2.2
None	No IPR available	PANTHER	PTHR33343:SF1	50S RIBOSOMAL PROTEIN L35	coord: 81..159 score: 2.2
None	No IPR available	unknown	SSF143034	L35p-like	coord: 90..152 score: 2.75

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0006223	uracil salvage
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0006364	rRNA processing
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0042793	plastid transcription
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0034051	negative regulation of plant-type hypersensitive response
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0015979	photosynthesis
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0030154	cell differentiation
biological_process	GO:0044206	UMP salvage
biological_process	GO:0006412	translation
biological_process	GO:0032502	developmental process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0010207	photosystem II assembly
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009654	photosystem II oxygen evolving complex
cellular_component	GO:0019898	extrinsic component of membrane
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009536	plastid
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0004845	uracil phosphoribosyltransferase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0047134	protein-disulfide reductase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo30004	0.78	Barchart \| Table
Spo08824	0.78	Barchart \| Table
Spo24633	0.75	Barchart \| Table
Spo03785	0.74	Barchart \| Table
Spo26006	0.74	Barchart \| Table
Spo10106	0.73	Barchart \| Table
Spo08474	0.73	Barchart \| Table
Spo14906	0.72	Barchart \| Table
Spo19288	0.72	Barchart \| Table
Spo26673	0.72	Barchart \| Table
Spo01496	0.71	Barchart \| Table
Spo19765	0.71	Barchart \| Table
Spo24016	0.71	Barchart \| Table
Spo25773	0.71	Barchart \| Table
Spo22999	0.71	Barchart \| Table
Spo10987	0.71	Barchart \| Table
Spo24081	0.70	Barchart \| Table
Spo04709	0.70	Barchart \| Table
Spo09282	0.70	Barchart \| Table
Spo09487	0.70	Barchart \| Table
Spo03139	0.70	Barchart \| Table
Spo11369	0.69	Barchart \| Table
Spo10493	0.69	Barchart \| Table
Spo18184	0.69	Barchart \| Table
Spo09777	0.69	Barchart \| Table
Spo09384	0.69	Barchart \| Table
Spo21808	0.69	Barchart \| Table
Spo20640	0.68	Barchart \| Table
Spo00405	0.68	Barchart \| Table
Spo08715	0.68	Barchart \| Table
Spo17740	0.67	Barchart \| Table
Spo21391	0.67	Barchart \| Table
Spo11385	0.66	Barchart \| Table
Spo00872	0.66	Barchart \| Table
Spo03906	0.66	Barchart \| Table
Spo00214	0.66	Barchart \| Table
Spo12022	0.66	Barchart \| Table
Spo14256	0.66	Barchart \| Table
Spo25817	0.66	Barchart \| Table