Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGAAAAAAAAAAAAAAAAGGGTGAGAAACCCATTTGCTCTTCATCTCCTTCCTCGCTCCTCCCACCTCCGGAGTTCTGATTACCTCCTCCTCCGCTTCAAACCCTAACTACTCACCTCCTACAAAACCACCATATCACCACCACTATTTTTCGGCGCCTTCCATTGTGGGTTTCAATCTGCCACATTCCAGCCACCTCTCGTTCTCTGCCGCCGCTGTTCTCGTTGTTGACGACAGTGTATAGCTTTTTCCTCTCATCTATTTTCTTCGCTTTTCTATTTTGTATCGATTTCAAGTTTTGTAATTTTCTGTATTTTATTGATTTTGGCTTGATTGCATTTCAGCTGAAAATAAGGTAATGGAATCATCATCTGTAATTAGCCCGGATGATGTTTTGGAGTCTTTGATGAATGACGGTACCATTGATGCTTTGAGGTTGAAGATTATCAATCAGCTTAAAGCTAATGTAAGTGACTAAGTGAACCTCCAATTTTCAATTTTTTTTGTTTTGCCATGTTTTTTGTTTTGCCATGTTTTGCCATCTTAATGAATTCTCTGTGCTGTTTTTTCGAAAGGTTTATGTGTATATTATCTGGTGGATTATGCATTAGGAGTTATTATGGTAATCAGAATCTGATAATGAGCTTATTTGCTTAGGTTACTCTCTTCTATAATAATATTAGGTTGTCTATGCTAGAAACTCGTTTCACCGTTTCACCGTTGCACTAGTAAATGATGTGTTATCTACTGTTTTCCATTGTTTTTTTTTTTTGTTTTTTTGTGGTAATTAAGCTGTAGCAAATTTATTCAAAACCCACACACCATTTTTACAACCTAAGTTCAAGTTGTGTTTCCAAACAGGAAGGACCAAAAACTAACAACCAGAACACAAAACATCCCAGGTAGGTAGGAACCCGTGCAAACAATTACAACAAACTAATTACAAAAACTGAAAAAAGAGACTTAAACCAAGATCTATCTCTACCACTTGTCTTTTGAGTCATAAAACTAAGAATCCTATACCTAATGTCCTATTTGATGTGCTTTACAAGTATATCTTGTGTCAAAATTTTGTGGTTCCATAAAATATCATTCCTGGCATTCCACACATGGTAAACAGTAGCTTGTATTCCAGTGAGGTAGACCCCTTTCACGAACTTATTCCCACTTTGTTTCCTTCTGGCCCATTTGATTACTCCTACTTTTCTTAAAGCATTGCTTCTATGATTTTAGGAGCACTGGCCGCCATGGCCCAAACGAAAGTAAAAAGACTTCTAGCTCATAGGCTTCGTCTGCTCGTCTGATCTTCTTCTCCGTAAAGGGTGGGAATAAGAGGGCCTTGAATTTTTTGAACTGAGTCCCTTTACCCATCCATAAGAGCACTTAGGAAAGGCACTGCTTCTTGTACTGACATTCGAAAAACAAGTGATTGTGAGTTTCACTTGCAGAACCACATGAGGCAAATATCATCTTGGTTGATTCCACATCTATGTAGTCTTTCCTTTGTAGGTAGTCTTTTTTCCATTGTTCAATCGTTGATGAGTTGATGTATATTGAAGAAGGGAGTGTGTGACCGTATGGGTTTGTGATTGATTGTATATCACTTGTGGGGCGCGGCCCGCCCGGGTAGCCCTAGAGAGAGGAGTCATATGAAGTTCTTATTAGACTGATGCGCATTATTTGAGTTCTGGTGGAATAAATAGAACAAATTTTACCTTTTCAATGGTCGTACATCATATGGTTTAGACGTTACCTTATATGTATGCGTCTTCACTCCGTGTCATCTTTTTTGATGCTTGATTTCTGAGTGGGAATTATATCCTTTTTTGAACGGGAGAGGAATTTCTTGCTCGTCCTCTATATGGCAAGTTGGTTACAACATATGATCCAGAATTTGTTACTTCTTCGGCATTATGTTTTCCGTTTCTTTGTTTCTTTGTGAGGTATGCACGTGCATGCTCAATATAGAAAGTTGGTTACAACATATGATCCATAATTTGTTACTTTTCAGAATTATGTTTTCCGTTTCTTTGCTTTTTTGTGAGGTATGCACGTGTATGCTCAATATAGAAAGTTGGTTAAAACACATGATCCAGAATTTGTTACTTCTTCGGCTATATGTTTTCCGGTTTTGTTGTGATCTGCACGTGTATACTCAATATAGCAAGTTGGTTATAACATATGATCCAAAATTTGGTACTTCTACGGCTATATGTTTTCCTTTTCTCTGTTTTGTCCTAAGATTTGCACGTGCATACCCATAGCAGATTGGTTACAACATATGATCCAGAATTTGTTACTTCTTCGGTTATATGTTTCCTTTTTTATGTTTTGTCGTGAGATTTGCACGTGTATACGCATATCAGGTTGTTACAACATATGATCCAGAATTTGTTGCTTTTTCGGCTGTATGTTCTTTTTTCTCTGTTTTATCGTAAGATTTGCACGTGTATCGCAAGTTGGTTACAACATATTATCCATTTTAATTTGTTACTTCTTCGGTTATATGTTTTCCTTTTTCCTGTTTCGTCGCGAGGGTTGCACAGTTGCACGTGTAGGAAGGGAGTCTGAACATTGGTTATTCTTTTCGGGGTCCAAAATGCACTTGGAGCTGATACCATTGTGTTCTACTGTGCAGGAGGAGTTGAAGAAAACAACAATTACAATGGTGGAACAGAGCAAGGTTCTCAACACTTCTGGAGCAGAAAAGCAGACCAAAAGGGAGCTCTTTGATTCTCTTCGCCAAGAGCTTGAGTAAGTTTCGATGCTACTTCTGCTGTTCACTTCCTTTTTCAATTTGTTAGAAGCCTTGGTTGGGGGAGAAAGGCATTTCTATTATGAGAGAGTCGCAAGCCGTAAATAATTCTGTTTAATCTAATCTAGTACTTCATGTCTCTTTTGGTTTTCTCATTTGATTAGGTTTAGGCTTTTGTTAAATCTCAATTTTGGCAGGTTTTAAACACTATCCAAGTTGGGCTTGATCTTTTTTTGAGGGGTCCAACTTAATGATTTTACGCGATTAAAATGCTGTCAATGCTTTAACGGATACAAACATCTTTCTCCTCCTATTAAGACAGGATCATTTGACTTTTATGCCCACCATGAACCATTGTATTAGATTATTAGTGTTGTTTGGCGCTAGTCTTCCTCCTAAGAGCTAGTGCAGGATTAGTTGTGCTGGCTGTTTCTGATTAATTTTGGCGAGTCAAGCTCGGTTCTCTTCACCTTATTTTCGCTTCTTTTCAGGTCCAATAAGATAAGATAAGATAATATAAGATAAAATAAGAGTCAATAAGTTCAGATAAGATAATATAAGGTAAGTTCAGATAAGATAAGATAAGGGTTAAAAAGTTCAAATGACACTTTTTTTTTATAACTTCCAATAAGGGTCAATAAGATAAGGTAAGTGAAATTCAGGTGAAGAGAACGGTACCTCACTCCACTTGTTCTCTTTCATGTTTCTGTCTTGTGTGTGCTGCTTTTGCCAAGTTAGTACTGCGTGGTTCAAATACTTGGTTGCTAGATTCTAATTCAAGTATTCAATTGGGATACGATGTACTTTAAACAAGTAGTATTTACTTTTGGATTCAACAAAGAACATAGTAGGCTTACCAACACCCTGCTAGTTAAAAAAGTAAAATAATACATGTAATAATTTATAACCAAATTGTCAAACTTCCTTGGCCTATAATATGAGAAAGAAACATAAGAGAGCTCGCTTGTGTAAGTAAATACTACTTTAGGTCAAGTGCTATCGAAAGGGGAAAAAGAAATTAAAGCCATACGATTACTCCATTTATTTGTAGACCAAATTTCGACCATTTCAATCACTCTCACCTCCCTTCCTTGCCAGTACACATTCTTATCCTTTCCATCATCATCAACCACCAGCGCTTTTTCTTCCGAAGACCATCATTGTCCTCGCTCCTGCTGCCACCACTGATGATGTCACTGTTCTCTCCTGCTTTCTCTGTTATCCTTCAGTGCTGCAAAGCCTTCCTCTGTCAATGTTGTTTGCCGAGCTGACTTCTTCTTCTGTTCTCTTCGAACCGGCCTCGAACTTGTACCTTTGGTGGTGAAAACCGACAGACAAGTAGTCTGTGGGGGTTTGTGGTTAAGAGGGGGTATGGGTAACTGAGTCAAGTCGACTCAAGTGGTTTTCATAATCTTATGAGTAAGAGGCAGGTGTTGGTGGTGCTGGAGGGTGAAAGAGTGGGGGCTATTTTTGGTTAGGGGTAATAATGGTCTTGAAAGCTGAATAGAGGCTGGTGGGTGGTGAACAATGGAGATGGTGGGTGGAAGATGGGGCCTTTTTGCATGAGGTTGGGAAAATTCAAACCCTTTGGTGGGGCAGGGGAGGGGGTAGTCAGAAAGACATAGTTGGGGTTGATCTAATTGTACAATCCAGAAAAGTGGGAAAGAGAGTAAAATAAAAATTGAACCAAGCATTTGCGATGGACTGAAATCGAGTCTATTTCCTTTCCTTCCCTAGCAATCCTGTAAAAAATCTCTTATAAGGTTTAGCTTTAAGCAGCTTAATAAATTTCGCTGGAGTAGCTGTTGACAATCTTGACATTATCTTTCACGGATCACAGTGAACGAGCTACGCTATTTCGGCATCCTGTCCTTTACCTGGGTGGTTGTTTGGTTTTATCTAGATTTTTGGTTTTTCTAATATGATTGTTGGTGTTTCCTTCCGATTTTCCTGGCAACTTAGTCAAGCGTTAAAAGATAGTAGAGCAAACATGCTTTCATTTGCTCTGTTACCGATGGTCTCTCTTGTGCTTTTCTTATGATGAATGCTGGTCAAATGTCTTATACTGGACACTTACTGTTGTCCTCTTTTTTATTTTATTTTTCTTCTGGCAGAGTGCCTGTGCTGGAGAAGGCCTCTAAATCAGTGTGGGACTTAATCTTGGATGAAAATGCGTTAGGGAAGGAAATAAGTGAAACGGTTGAAAGAGTGTTTTGCCGATTAAGTGGGCGTGAACCTCCTTTATTTCCTGGTTCAACCCAAGAGGAGAAAGAGCAGGATGAGAATCCGTCTTCTGCTTCGAAGAAAAGAAGTTTCAATGATATGAATGGAGGAGTGGAGAAAGTAGACACGGGATCTGATGATGTCCCACCTGCATCTGAAGATAAAAACCCTGTTACTGACACAAAGACTTAAACACTAGTTGGAGTCCCGGTTTATATAATTTAGATCAATGCTTCACATTGAGCAGTGTTAAAAAATGTGTTAGGCTTGTAACATATTCTTTGTTCTGGTGGTATACTGTCTTGAACTGAAGAAGGCTGTTCCTTCCCCGGCGTTTCAATGTTCGACAAAGGCGGGGTTGAGTGGTGATCAGCATTGCACAATATCAACAATCTGATAGCAACATTTGTAACTTGGTTTTCTTATCAATTGTAATGGTGCATTATATGTGGAGGATAGTATATGTATGACAACTTATACAAAAGTACATAACCTTAAGTAAGATTATTAGTAGTTCAAACTGCAAAACTGGATTTGGGCTTAGCCAGGTTCATTCAGGGCTTGCCTTTTGATTATTTTCAGAAAATGGAATGTAATTTTTGTAATGAATTATTTTTCAATCAATTTGACCACCCCTTACCCCGCTTGTTGCGGGAGCCTCTTTGAAGGCATGGGTAATGATAATTGATAACGACGAATGTGCAAAAATCCAAACTGGT TGAAAAAAAAAAAAAAAAGGGTGAGAAACCCATTTGCTCTTCATCTCCTTCCTCGCTCCTCCCACCTCCGGAGTTCTGATTACCTCCTCCTCCGCTTCAAACCCTAACTACTCACCTCCTACAAAACCACCATATCACCACCACTATTTTTCGGCGCCTTCCATTGTGGGTTTCAATCTGCCACATTCCAGCCACCTCTCGTTCTCTGCCGCCGCTGTTCTCGTTGTTGACGACAGTCTGAAAATAAGGTAATGGAATCATCATCTGTAATTAGCCCGGATGATGTTTTGGAGTCTTTGATGAATGACGGTACCATTGATGCTTTGAGGTTGAAGATTATCAATCAGCTTAAAGCTAATGAGGAGTTGAAGAAAACAACAATTACAATGGTGGAACAGAGCAAGGTTCTCAACACTTCTGGAGCAGAAAAGCAGACCAAAAGGGAGCTCTTTGATTCTCTTCGCCAAGAGCTTGAAGTGCCTGTGCTGGAGAAGGCCTCTAAATCAGTGTGGGACTTAATCTTGGATGAAAATGCGTTAGGGAAGGAAATAAGTGAAACGGTTGAAAGAGTGTTTTGCCGATTAAGTGGGCGTGAACCTCCTTTATTTCCTGGTTCAACCCAAGAGGAGAAAGAGCAGGATGAGAATCCGTCTTCTGCTTCGAAGAAAAGAAGTTTCAATGATATGAATGGAGGAGTGGAGAAAGTAGACACGGGATCTGATGATGTCCCACCTGCATCTGAAGATAAAAACCCTGTTACTGACACAAAGACTTAAACACTAGTTGGAGTCCCGGTTTATATAATTTAGATCAATGCTTCACATTGAGCAGTGTTAAAAAATGTGTTAGGCTTGTAACATATTCTTTGTTCTGGTGGTATACTGTCTTGAACTGAAGAAGGCTGTTCCTTCCCCGGCGTTTCAATGTTCGACAAAGGCGGGGTTGAGTGGTGATCAGCATTGCACAATATCAACAATCTGATAGCAACATTTGTAACTTGGTTTTCTTATCAATTGTAATGGTGCATTATATGTGGAGGATAGTATATGTATGACAACTTATACAAAAGTACATAACCTTAAGTAAGATTATTAGTAGTTCAAACTGCAAAACTGGATTTGGGCTTAGCCAGGTTCATTCAGGGCTTGCCTTTTGATTATTTTCAGAAAATGGAATGTAATTTTTGTAATGAATTATTTTTCAATCAATTTGACCACCCCTTACCCCGCTTGTTGCGGGAGCCTCTTTGAAGGCATGGGTAATGATAATTGATAACGACGAATGTGCAAAAATCCAAACTGGT ATGGAATCATCATCTGTAATTAGCCCGGATGATGTTTTGGAGTCTTTGATGAATGACGGTACCATTGATGCTTTGAGGTTGAAGATTATCAATCAGCTTAAAGCTAATGAGGAGTTGAAGAAAACAACAATTACAATGGTGGAACAGAGCAAGGTTCTCAACACTTCTGGAGCAGAAAAGCAGACCAAAAGGGAGCTCTTTGATTCTCTTCGCCAAGAGCTTGAAGTGCCTGTGCTGGAGAAGGCCTCTAAATCAGTGTGGGACTTAATCTTGGATGAAAATGCGTTAGGGAAGGAAATAAGTGAAACGGTTGAAAGAGTGTTTTGCCGATTAAGTGGGCGTGAACCTCCTTTATTTCCTGGTTCAACCCAAGAGGAGAAAGAGCAGGATGAGAATCCGTCTTCTGCTTCGAAGAAAAGAAGTTTCAATGATATGAATGGAGGAGTGGAGAAAGTAGACACGGGATCTGATGATGTCCCACCTGCATCTGAAGATAAAAACCCTGTTACTGACACAAAGACTTAA MESSSVISPDDVLESLMNDGTIDALRLKIINQLKANEELKKTTITMVEQSKVLNTSGAEKQTKRELFDSLRQELEVPVLEKASKSVWDLILDENALGKEISETVERVFCRLSGREPPLFPGSTQEEKEQDENPSSASKKRSFNDMNGGVEKVDTGSDDVPPASEDKNPVTDTKT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06139.1 vs. NCBI nr
Match: gi|902221187|gb|KNA18811.1| (hypothetical protein SOVF_067290 [Spinacia oleracea]) HSP 1 Score: 327.4 bits (838), Expect = 1.500e-86 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
BLAST of Spo06139.1 vs. NCBI nr
Match: gi|731322056|ref|XP_010671681.1| (PREDICTED: uncharacterized protein LOC104888414 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 274.6 bits (701), Expect = 1.200e-70 Identity = 147/178 (82.58%), Postives = 160/178 (89.89%), Query Frame = 1
BLAST of Spo06139.1 vs. NCBI nr
Match: gi|731322062|ref|XP_010671684.1| (PREDICTED: uncharacterized protein LOC104888414 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 251.1 bits (640), Expect = 1.400e-63 Identity = 133/162 (82.10%), Postives = 145/162 (89.51%), Query Frame = 1
BLAST of Spo06139.1 vs. NCBI nr
Match: gi|823197428|ref|XP_012434274.1| (PREDICTED: uncharacterized protein LOC105761117 [Gossypium raimondii]) HSP 1 Score: 222.2 bits (565), Expect = 6.900e-55 Identity = 131/188 (69.68%), Postives = 140/188 (74.47%), Query Frame = 1
BLAST of Spo06139.1 vs. NCBI nr
Match: gi|823197421|ref|XP_012434273.1| (PREDICTED: uncharacterized protein LOC105761116 [Gossypium raimondii]) HSP 1 Score: 222.2 bits (565), Expect = 6.900e-55 Identity = 127/188 (67.55%), Postives = 139/188 (73.94%), Query Frame = 1
BLAST of Spo06139.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH22_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_067290 PE=4 SV=1) HSP 1 Score: 327.4 bits (838), Expect = 1.100e-86 Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 1
BLAST of Spo06139.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CR19_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g053870 PE=4 SV=1) HSP 1 Score: 274.6 bits (701), Expect = 8.100e-71 Identity = 147/178 (82.58%), Postives = 160/178 (89.89%), Query Frame = 1
BLAST of Spo06139.1 vs. UniProtKB/TrEMBL
Match: A0A0D2PHC3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G305900 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 4.800e-55 Identity = 127/188 (67.55%), Postives = 139/188 (73.94%), Query Frame = 1
BLAST of Spo06139.1 vs. UniProtKB/TrEMBL
Match: A0A0D2R266_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G306000 PE=4 SV=1) HSP 1 Score: 222.2 bits (565), Expect = 4.800e-55 Identity = 131/188 (69.68%), Postives = 140/188 (74.47%), Query Frame = 1
BLAST of Spo06139.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MYQ7_GOSAR (S-adenosylmethionine synthase OS=Gossypium arboreum GN=F383_32049 PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 6.200e-55 Identity = 131/188 (69.68%), Postives = 140/188 (74.47%), Query Frame = 1
BLAST of Spo06139.1 vs. TAIR (Arabidopsis)
Match: AT1G56420.1 (unknown protein) HSP 1 Score: 195.7 bits (496), Expect = 2.400e-50 Identity = 109/164 (66.46%), Postives = 129/164 (78.66%), Query Frame = 1
BLAST of Spo06139.1 vs. TAIR (Arabidopsis)
Match: AT1G12530.1 (unknown protein) HSP 1 Score: 79.0 bits (193), Expect = 3.300e-15 Identity = 59/165 (35.76%), Postives = 91/165 (55.15%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06139.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo06139.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo06139.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo06139.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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