Spo06278 (gene) | SpinachBase

Overview


Name	Spo06278
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RmlC-like cupins superfamily protein
Location	SpoScf_04721 : 1803 .. 5534 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCCTCAAGTGCTTGATCTTTCATACATCAAGATTGAAGGCAAGATAGGACATGGGTGGACATAATTTTTTTCACATGATCCCTTAAAAAGAAAGTGTGCACTTAAAAAATTTCAGACACCAAAATTTTTGATGTTAAACTTAAACCTCGTTAAAAGTTTGCCTTGAAAAAAGAGGGGACCTTATTAAAAGGTTCTTAAAAAATGGGAATTGGTCTTACAGTCACCGGACAGTCAACTATTGGACTACTACCTTCTTCATCAACCCACAAAAATTGCTACAACCCAAATCATCGCTCTCTTCAAATTCAACCTTTTCCATTAAAATCAACAATTGGGTCGAATTATTTTGGATTAAAAACCCAGAAAAACCCATCTTTTTCCATAGTTAGGGCATCAACTGAGGGCACAAGCATGTCTAATCCAATTGAGAAACTGGGTGTCAAAATTGAGAGGAACCCTCCTGAGTCTAGGCTCTCTGAGCTCGGTGTTCGCGATTGGCCCAAGTAATCTCTCTTTTTTCTGTTTTTCTTATCATTTGTAAATGGTTACTTCTTTGATTATTGTATCAATTTTTGTTTGGTGATTTGTTTTGATGTGTTACTGGGTCTCTTCATATACCGGAGTCGGACACGAGTCGCACGAGTACACGGGGTTTGAGTATCATAAGCCGTTTTGAGCTGGTGATGAAGCTTTATATGATCAATATTGAAACAAAATTAAGGGTTTTGGTGAAATGTGCTCGCAACTTGTGTTTTGGAGTATATAAATGATTAACGAATTACTACGTTTAAGATTGCAAGCATTCTATTTGGATAATTGTGAATTTTTGTCAAGAATATGTAAATACAAGTAAGTGAATTTGAATAAGTAGATGTAATTAAGTATGAACTAGAATTTTGTATTTTCTGTGCTAACATGTAATTATCCATCACCGATTAAGAATTGCGAGAATGAGCAGCTTTATTGATAAAATTGTGGTGCTATACTGCTAGTGCTTATAGTAGCTAAAATTAGGATATACATTGGTGTTCTTGGTGATACCTACTGAGACGAAATTGCACTATAACACGAGTAAACGAGTAGTACTTGGCTTTGTGGTTAATAGTTACCTTCTTTTTGTTAAAAGCGCGCCCATGTTTGGGTTAAGTGATTACCAAATAGCAATTCAATGTAGTTGTCACTGATGTCCAACCCTTGAGGTCGAAGGTCGAATTTGTAAGCTGCTAATACATTTGCCATTGAAGTTTCTGGCAGTTGATTGGTTTAATCTGTCAGACTTGTATATATTCCTTCATACTAGCACAGTTTTGTGAGGCTAGTAAAAGAGGATATGACAAGGAAGCTACATATGGTGTTTTGTGATGCATTTTGTGGTGGTTCTTCACTTTCTTTTAGAGACCAAGCATCTCTAAGAAGTGGGAACAAATTTCATGTATACAGGCTTCAATTGTGTCTTAACATTATGACTCCAAGATCTGCTGATCCTTTTGTGTCATTAAATGTTAATGGCAGTTATCAAGATTGATGCTCTCATATCAAGATTGATGCTCTCATGTGAAACCTTTATAGGTTGTTGAATCTAGACTAGACGTCATTGCTTGCACTTTGGCTTTACTTATATTCTCTCAGTTGTTAGGCTACTTGCATTGGCAAAAGAGCGTACTATTGTTTTCTCTAATAACGGATGCATGAAAGATAAATCAACAAGAAGAATATTGGCCAACAGATTATGTACATGGTACACTATCTATGTGTACGACCACAAGCCAAGTGGGGGAATGATCTTATTAGGTTTTGAGGAGTTAAGTTTACATAATACATATCGATTAGGTTTTGAGTAGTTAAGTGTACAACAAACATATAGGCCCAAATAGGAATCTAACATAAAACGATATCCCAATTCAAGAACTCGGCTATTATTTGTGGTTTGAGGGGGTATTTAACCATCTCCTTGAGTATATCATTATTAATCACTTTAATATAACATGCTCTACCACTTTCCCAAACGGAACAAAGGAAATGCTAAGTTTATGACTCCTTAATAAACACTTCGTATAATTCTATATATGTTGTGTATTGTATCTTTTCTAATGTGTATTTCTCTGTCATGATATAGGTGGGGTTGTGCTCCTAGTAATTTTCCTTGGACGTATGAGGCAAAGGAGACATGCTATCTGTTGAAAGGAAAGGTGAAGGTTTATCCTGATGGTTCTAGCGAAGCTGTTGAGTTTGGAGCTGGTGATTTGGTTGTATTCCCAAAAGGTATGAAGTGTACTTGGGATGTCTCAGAAGCTGTTGATAAGCATTACAATTTTGAGTGAGCATATAGATAGAAACCTGCTATGGGACCTTATGCTAAGCGTTGTATGTCATTACGTGCAGTTTCTTGTATACTCTGATTACCATCATCATGTTGCTCAATAATCATGTTAGAGAGGTCTAATTGTTATGGAAGTTATTGAGATTAGATTTTATTGTTGTCTTCAAGTTTTGCAATTATGATGCGCTGTCACAATTTCTTTCTCTCCTTTCCTAAATGTCATTTTGTTAGAAGGTTTAGGAATTTATAACTGCTTGAGGATGCATGGGAAATGGTGTCTTCAATTTCAGTGAGGAGAATTGACTTTGTTTTGCTGAATGTAGAGATAAAGAGAGTTAGAATCTTAGAGAATAGAGAGGATACATCTTTAACTTCTGATTTTGTTTTCCTCTGTTTCCTGAGCATGTAATTTTGCGTTTCTTTGTTGCATTCTTGGGTTTATTATGCCCGTCTGCACTCTGCTGCTGATCACAAATATCCCTCATTGTTGGTGTTGGGAAAGGGCCATTATTTACAAGTTCGACCTAGATTTGTTCTCGACTCTTTTTTATTAAATTTTTAGGCTATCCAGGTTATTGGGATGAAAAGGTGGGTTACTCTGATCTTTATTCTTCTGTTGATTTCAAGTCTCCTAGTTTCGGGAGAGCCTTTTGACTGCTAACGTAATGATGGAAGACGTTAGCATAGCCACAAGGCCACAATAGATTTAAGTTAGCTCTGGTTTCTCGCTAGTTTCCCTAAATGAGAAAATCAGTACAAGTATTTGATTAATGATGGTTTCCAGAAATTCCCAGAAGTTAGCTATATATCATTATATCTTGCTATGCTACTAATTGTATGCTGTAGACCCTGCTATTCCCCTTAACCTCTCAAAAGTGAAACCAGCAGCAGTGGCACGAGCGAAAAAGAAATATTGAAGGAATAAGCCATTGTGTTTGTCTAATTGAGTTTTTAGGTGTGTTGTGCTTTTTATGGTTGCAGCTTGCCAGTGTTTGTTATAGGTACCTGTATTTATAATTCTAAGCAGTTTAGTAAGTTGGTCATTCTCTATGTTGTTTGTTAAGGATTTTCTCATGGGGTTGGCCATAGCATTCTGCAGCAAAGGAGTCAAGGACTCATCTAGTCATCTTCATTCTTCAAGTTGTTTGCAAATGTGAAATAAATTTACATTGGAGGGCCAATAGAGTCACATCGGAGGGTTGGATTTGTGAAAAGAGAGTTAGTGAGTACTCGTGTAATTAATTTCCCTAAGATCCCACCTATGTTTTTTATGTTGTGACTAGACTTGGTTACTGCGTGGTTCGGTCAGGGTCGGTACGTGCTAGAAGCAGGTCGAGTCATAAAGGGATCACCCTGGAGTGGGTCGATATTGGGCAGGTCTAGGGATGTCAACGAGCCGAGCCGAGCCGA

mRNA sequence

CTTCCTCAAGTGCTTGATCTTTCATACATCAAGATTGAAGGCAAGATAGGACATGGGTGGACATAATTTTTTTCACATGATCCCTTAAAAAGAAAGTGTGCACTTAAAAAATTTCAGACACCAAAATTTTTGATGTTAAACTTAAACCTCGTTAAAAGTTTGCCTTGAAAAAAGAGGGGACCTTATTAAAAGGTTCTTAAAAAATGGGAATTGGTCTTACAGTCACCGGACAGTCAACTATTGGACTACTACCTTCTTCATCAACCCACAAAAATTGCTACAACCCAAATCATCGCTCTCTTCAAATTCAACCTTTTCCATTAAAATCAACAATTGGGTCGAATTATTTTGGATTAAAAACCCAGAAAAACCCATCTTTTTCCATAGTTAGGGCATCAACTGAGGGCACAAGCATGTCTAATCCAATTGAGAAACTGGGTGTCAAAATTGAGAGGAACCCTCCTGAGTCTAGGCTCTCTGAGCTCGGTGTTCGCGATTGGCCCAAGTGGGGTTGTGCTCCTAGTAATTTTCCTTGGACGTATGAGGCAAAGGAGACATGCTATCTGTTGAAAGGAAAGGTGAAGGTTTATCCTGATGGTTCTAGCGAAGCTGTTGAGTTTGGAGCTGGTGATTTGGTTGTATTCCCAAAAGGATTTTCTCATGGGGTTGGCCATAGCATTCTGCAGCAAAGGAGTCAAGGACTCATCTAGTCATCTTCATTCTTCAAGTTGTTTGCAAATGTGAAATAAATTTACATTGGAGGGCCAATAGAGTCACATCGGAGGGTTGGATTTGTGAAAAGAGAGTTAGTGAGTACTCGTGTAATTAATTTCCCTAAGATCCCACCTATGTTTTTTATGTTGTGACTAGACTTGGTTACTGCGTGGTTCGGTCAGGGTCGGTACGTGCTAGAAGCAGGTCGAGTCATAAAGGGATCACCCTGGAGTGGGTCGATATTGGGCAGGTCTAGGGATGTCAACGAGCCGAGCCGAGCCGA

Coding sequence (CDS)

ATGGGAATTGGTCTTACAGTCACCGGACAGTCAACTATTGGACTACTACCTTCTTCATCAACCCACAAAAATTGCTACAACCCAAATCATCGCTCTCTTCAAATTCAACCTTTTCCATTAAAATCAACAATTGGGTCGAATTATTTTGGATTAAAAACCCAGAAAAACCCATCTTTTTCCATAGTTAGGGCATCAACTGAGGGCACAAGCATGTCTAATCCAATTGAGAAACTGGGTGTCAAAATTGAGAGGAACCCTCCTGAGTCTAGGCTCTCTGAGCTCGGTGTTCGCGATTGGCCCAAGTGGGGTTGTGCTCCTAGTAATTTTCCTTGGACGTATGAGGCAAAGGAGACATGCTATCTGTTGAAAGGAAAGGTGAAGGTTTATCCTGATGGTTCTAGCGAAGCTGTTGAGTTTGGAGCTGGTGATTTGGTTGTATTCCCAAAAGGATTTTCTCATGGGGTTGGCCATAGCATTCTGCAGCAAAGGAGTCAAGGACTCATCTAG

Protein sequence

MGIGLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSFSIVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLKGKVKVYPDGSSEAVEFGAGDLVVFPKGFSHGVGHSILQQRSQGLI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06278.1	Spo06278.1	mRNA

Homology

[Close]

BLAST of Spo06278.1 vs. NCBI nr
Match: gi|902239896|gb|KNA25785.1| (hypothetical protein SOVF_003690 [Spinacia oleracea])

HSP 1 Score: 315.1 bits (806), Expect = 7.500e-83
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1

		  
Query: 1   MGIGLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSFS 60
           MGIGLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSFS
Sbjct: 1   MGIGLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSFS 60

Query: 61  IVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCY 120
           IVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCY
Sbjct: 61  IVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCY 120

Query: 121 LLKGKVKVYPDGSSEAVEFGAGDLVVFPKG 151
           LLKGKVKVYPDGSSEAVEFGAGDLVVFPKG
Sbjct: 121 LLKGKVKVYPDGSSEAVEFGAGDLVVFPKG 150

[Close]

BLAST of Spo06278.1 vs. NCBI nr
Match: gi|731317802|ref|XP_010669376.1| (PREDICTED: uncharacterized protein LOC104886611 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 233.4 bits (594), Expect = 2.900e-58
Identity = 119/151 (78.81%), Postives = 127/151 (84.11%), Query Frame = 1

		  
Query: 1   MGI-GLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSF 60
           MGI GLTV GQS IGL   +ST+K C+ PNH  L +Q   LKST GSN F +K QKN SF
Sbjct: 1   MGILGLTVVGQSIIGL--PTSTNKICHYPNHCHLHLQLPQLKSTSGSNSFRVKNQKNRSF 60

Query: 61  SIVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETC 120
            IVRASTEGTSMS+ IEKLGVKIE+NPPESRLSELGVR WPKWGCAPS FPWTY+AKETC
Sbjct: 61  CIVRASTEGTSMSSTIEKLGVKIEKNPPESRLSELGVRQWPKWGCAPSKFPWTYDAKETC 120

Query: 121 YLLKGKVKVYPDGSSEAVEFGAGDLVVFPKG 151
           YLLKGKVKVYPDGS EAVEFGAGDLVVFPKG
Sbjct: 121 YLLKGKVKVYPDGSDEAVEFGAGDLVVFPKG 149

[Close]

BLAST of Spo06278.1 vs. NCBI nr
Match: gi|870867008|gb|KMT17920.1| (hypothetical protein BVRB_2g034450 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 162.5 bits (410), Expect = 6.200e-37
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1

		  
Query: 71  MSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLKGKVKVYP 130
           MS+ IEKLGVKIE+NPPESRLSELGVR WPKWGCAPS FPWTY+AKETCYLLKGKVKVYP
Sbjct: 1   MSSTIEKLGVKIEKNPPESRLSELGVRQWPKWGCAPSKFPWTYDAKETCYLLKGKVKVYP 60

Query: 131 DGSSEAVEFGAGDLVVFPKG 151
           DGS EAVEFGAGDLVVFPKG
Sbjct: 61  DGSDEAVEFGAGDLVVFPKG 80

[Close]

BLAST of Spo06278.1 vs. NCBI nr
Match: gi|702381852|ref|XP_010063743.1| (PREDICTED: uncharacterized protein LOC104450754 [Eucalyptus grandis])

HSP 1 Score: 154.5 bits (389), Expect = 1.700e-34
Identity = 70/95 (73.68%), Postives = 81/95 (85.26%), Query Frame = 1

		  
Query: 58  SFSIVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKE 117
           +F  +RASTE  SMS  +EKLG+K+ERNPPE +LSELGVR WPKWGC PS FPWTY +KE
Sbjct: 32  AFPSIRASTE--SMSGVVEKLGIKVERNPPEPKLSELGVRKWPKWGCPPSKFPWTYSSKE 91

Query: 118 TCYLLKGKVKVYPDGSSEAVEFGAGDLVVFPKGFS 153
           TCYLL+GKVKV P+G++EAVE GAGDLVVFPKG S
Sbjct: 92  TCYLLEGKVKVTPEGANEAVEIGAGDLVVFPKGMS 124

[Close]

BLAST of Spo06278.1 vs. NCBI nr
Match: gi|351723041|ref|NP_001236497.1| (uncharacterized protein LOC100527470 [Glycine max])

HSP 1 Score: 152.5 bits (384), Expect = 6.400e-34
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1

		  
Query: 64  ASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLK 123
           A+T   SM+  IEKLG+KIERNPPES+L++LGVR WPKWGC PS FPWTYEAKETCYLL+
Sbjct: 38  ATTRAESMTTVIEKLGIKIERNPPESKLTQLGVRQWPKWGCPPSKFPWTYEAKETCYLLE 97

Query: 124 GKVKVYPDGSSEAVEFGAGDLVVFPKGFS 153
           GKVKV+P GS+E+VE  AGDLVVFPKG S
Sbjct: 98  GKVKVFPSGSNESVEIAAGDLVVFPKGMS 126

[Close]

BLAST of Spo06278.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S210_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_003690 PE=4 SV=1)

HSP 1 Score: 315.1 bits (806), Expect = 5.200e-83
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1

		  
Query: 1   MGIGLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSFS 60
           MGIGLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSFS
Sbjct: 1   MGIGLTVTGQSTIGLLPSSSTHKNCYNPNHRSLQIQPFPLKSTIGSNYFGLKTQKNPSFS 60

Query: 61  IVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCY 120
           IVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCY
Sbjct: 61  IVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCY 120

Query: 121 LLKGKVKVYPDGSSEAVEFGAGDLVVFPKG 151
           LLKGKVKVYPDGSSEAVEFGAGDLVVFPKG
Sbjct: 121 LLKGKVKVYPDGSSEAVEFGAGDLVVFPKG 150

[Close]

BLAST of Spo06278.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CW27_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g034450 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.300e-37
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1

		  
Query: 71  MSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLKGKVKVYP 130
           MS+ IEKLGVKIE+NPPESRLSELGVR WPKWGCAPS FPWTY+AKETCYLLKGKVKVYP
Sbjct: 1   MSSTIEKLGVKIEKNPPESRLSELGVRQWPKWGCAPSKFPWTYDAKETCYLLKGKVKVYP 60

Query: 131 DGSSEAVEFGAGDLVVFPKG 151
           DGS EAVEFGAGDLVVFPKG
Sbjct: 61  DGSDEAVEFGAGDLVVFPKG 80

[Close]

BLAST of Spo06278.1 vs. UniProtKB/TrEMBL
Match: C6T4F2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G177000 PE=2 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.500e-34
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1

		  
Query: 64  ASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLK 123
           A+T   SM+  IEKLG+KIERNPPES+L++LGVR WPKWGC PS FPWTYEAKETCYLL+
Sbjct: 38  ATTRAESMTTVIEKLGIKIERNPPESKLTQLGVRQWPKWGCPPSKFPWTYEAKETCYLLE 97

Query: 124 GKVKVYPDGSSEAVEFGAGDLVVFPKGFS 153
           GKVKV+P GS+E+VE  AGDLVVFPKG S
Sbjct: 98  GKVKVFPSGSNESVEIAAGDLVVFPKGMS 126

[Close]

BLAST of Spo06278.1 vs. UniProtKB/TrEMBL
Match: A0A0B2RAF7_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_029972 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 4.500e-34
Identity = 67/89 (75.28%), Postives = 77/89 (86.52%), Query Frame = 1

		  
Query: 64  ASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLK 123
           A+T   SM+  IEKLG+KIERNPPES+L++LGVR WPKWGC PS FPWTYEAKETCYLL+
Sbjct: 38  ATTRAESMTTVIEKLGIKIERNPPESKLTQLGVRQWPKWGCPPSKFPWTYEAKETCYLLE 97

Query: 124 GKVKVYPDGSSEAVEFGAGDLVVFPKGFS 153
           GKVKV+P GS+E+VE  AGDLVVFPKG S
Sbjct: 98  GKVKVFPSGSNESVEIAAGDLVVFPKGMS 126

[Close]

BLAST of Spo06278.1 vs. UniProtKB/TrEMBL
Match: C6SYR7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G213200 PE=2 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.000e-33
Identity = 66/89 (74.16%), Postives = 77/89 (86.52%), Query Frame = 1

		  
Query: 64  ASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLK 123
           A+T   +M+  IEKLG+KIERNPPES+L++LGVR WPKWGC PS FPWTYEAKETCYLL+
Sbjct: 38  ATTRAETMTTVIEKLGIKIERNPPESKLTQLGVRQWPKWGCPPSKFPWTYEAKETCYLLE 97

Query: 124 GKVKVYPDGSSEAVEFGAGDLVVFPKGFS 153
           GKVKV+P GS+E+VE  AGDLVVFPKG S
Sbjct: 98  GKVKVFPSGSNESVEIAAGDLVVFPKGMS 126

[Close]

BLAST of Spo06278.1 vs. TAIR (Arabidopsis)
Match: AT4G10300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 138.7 bits (348), Expect = 3.400e-33
Identity = 63/103 (61.17%), Postives = 77/103 (74.76%), Query Frame = 1

		  
Query: 51  LKTQKNPSFSIVRASTEGTSM-SNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNF 110
           L  + N  ++  R S+   ++ +   EKLG+ IE+NPPES+L++LGVR WPKWGC PS F
Sbjct: 16  LTRRSNKPYNSRRPSSMAAAIRAESTEKLGITIEKNPPESKLTQLGVRSWPKWGCPPSKF 75

Query: 111 PWTYEAKETCYLLKGKVKVYPDGSSEAVEFGAGDLVVFPKGFS 153
           PWTY AKETCYLL+GKVKVYP+GS E VE  AGD VVFPKG S
Sbjct: 76  PWTYSAKETCYLLQGKVKVYPNGSDEGVEIEAGDFVVFPKGMS 118

[Close]

BLAST of Spo06278.1 vs. TAIR (Arabidopsis)
Match: AT3G04300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.200e-24
Identity = 47/75 (62.67%), Postives = 54/75 (72.00%), Query Frame = 1

		  
Query: 78  LGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLKGKVKVYPDGSSEAV 137
           + + IE NP   RLS+LGV  WPKW C P  +   +E +ETCYL+KGKVKVYP GSSE V
Sbjct: 1   MNIVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFV 60

Query: 138 EFGAGDLVVFPKGFS 153
           EFGAGDLV  PKG S
Sbjct: 61  EFGAGDLVTIPKGLS 75

[Close]

BLAST of Spo06278.1 vs. TAIR (Arabidopsis)
Match: AT4G28703.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 96.7 bits (239), Expect = 1.500e-20
Identity = 44/80 (55.00%), Postives = 56/80 (70.00%), Query Frame = 1

		  
Query: 82  IERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLKGKVKVY----PDGSSEA- 141
           +E+NP ++RL EL  + WPKWGC+P  +   YEA+E CY+L+GKVKVY    P  SS+A 
Sbjct: 10  VEQNPSQARLDELKFKSWPKWGCSPGKYHLKYEAEEICYILRGKVKVYPKPPPSSSSDAE 69

Query: 142 ----VEFGAGDLVVFPKGFS 153
               VEFGAGD+V FPKG S
Sbjct: 70  VEWCVEFGAGDIVTFPKGLS 89

[Close]

BLAST of Spo06278.1 vs. TAIR (Arabidopsis)
Match: AT4G10280.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 91.7 bits (226), Expect = 4.800e-19
Identity = 47/102 (46.08%), Postives = 62/102 (60.78%), Query Frame = 1

		  
Query: 51  LKTQKNPSFSIVRASTEGTSMSNPIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFP 110
           + T+ NP  +IV  S++      P E  GVKI R   +++L++LGV  WPKW  APS FP
Sbjct: 22  ITTKLNPKEAIVSVSSDSEI---PTEIHGVKILRQASDTKLAQLGVASWPKWEGAPSKFP 81

Query: 111 WTYEAKETCYLLKGKVKVYPDG---SSEAVEFGAGDLVVFPK 150
           W ++  ET Y ++GKVKV  DG     E  E G GD+VVFPK
Sbjct: 82  WEFKKTETIYFMEGKVKVNVDGYDEEEETFEIGKGDVVVFPK 120

[Close]

BLAST of Spo06278.1 vs. TAIR (Arabidopsis)
Match: AT4G10290.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 76.3 bits (186), Expect = 2.100e-14
Identity = 36/79 (45.57%), Postives = 49/79 (62.03%), Query Frame = 1

		  
Query: 74  PIEKLGVKIERNPPESRLSELGVRDWPKWGCAPSNFPWTYEAKETCYLLKGKVKVYPDG- 133
           P E  GVK+ R   +++L+ELGV  W  W   P  FPW ++  ET Y ++GK+KV  +  
Sbjct: 14  PTEIHGVKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDH 73

Query: 134 --SSEAVEFGAGDLVVFPK 150
               EA+EF AGDLVVFP+
Sbjct: 74  HKEGEALEFVAGDLVVFPQ 92

The following BLAST results are available for this feature:

BLAST of Spo06278.1 vs. NCBI nr
BLAST of Spo06278.1 vs. UniProtKB/TrEMBL
BLAST of Spo06278.1 vs. ExPASy Swiss-Prot
BLAST of Spo06278.1 vs. TAIR (Arabidopsis)

BLAST of Spo06278.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902239896\|gb\|KNA25785.1\|	7.5e-83	100.	hypothetical protein SOVF_0036...	[more]
gi\|731317802\|ref\|XP_010669376.1\|	2.9e-58	78.8	PREDICTED: uncharacterized pro...	[more]
gi\|870867008\|gb\|KMT17920.1\|	6.2e-37	91.2	hypothetical protein BVRB_2g03...	[more]
gi\|702381852\|ref\|XP_010063743.1\|	1.7e-34	73.6	PREDICTED: uncharacterized pro...	[more]
gi\|351723041\|ref\|NP_001236497.1\|	6.4e-34	75.2	uncharacterized protein LOC100...	[more]

BLAST of Spo06278.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9S210_SPIOL	5.2e-83	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CW27_BETVU	4.3e-37	91.2	Uncharacterized protein OS=Bet...	[more]
C6T4F2_SOYBN	4.5e-34	75.2	Uncharacterized protein OS=Gly...	[more]
A0A0B2RAF7_GLYSO	4.5e-34	75.2	Uncharacterized protein OS=Gly...	[more]
C6SYR7_SOYBN	1.0e-33	74.1	Uncharacterized protein OS=Gly...	[more]

BLAST of Spo06278.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

BLAST of Spo06278.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
AT4G10300.1	3.4e-33	61.1	RmlC-like cupins superfamily p...	[more]
AT3G04300.1	2.2e-24	62.6	RmlC-like cupins superfamily p...	[more]
AT4G28703.1	1.5e-20	55.0	RmlC-like cupins superfamily p...	[more]
AT4G10280.1	4.8e-19	46.0	RmlC-like cupins superfamily p...	[more]
AT4G10290.1	2.1e-14	45.5	RmlC-like cupins superfamily p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008579	Domain of unknown function DUF861, cupin-3	PFAM	PF05899	Cupin_3	coord: 92..152 score: 1.3
IPR011051	RmlC-like cupin domain	unknown	SSF51182	RmlC-like cupins	coord: 86..155 score: 1.74
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10		coord: 77..153 score: 8.2
None	No IPR available	PANTHER	PTHR33271	FAMILY NOT NAMED	coord: 70..152 score: 3.9
None	No IPR available	PANTHER	PTHR33271:SF6	SUBFAMILY NOT NAMED	coord: 70..152 score: 3.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0030091	protein repair
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0010050	vegetative phase change
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0048438	floral whorl development
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0009850	auxin metabolic process
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0009631	cold acclimation
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0030007	cellular potassium ion homeostasis
biological_process	GO:0043090	amino acid import
biological_process	GO:0008152	metabolic process
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0009651	response to salt stress
biological_process	GO:0006457	protein folding
biological_process	GO:0009555	pollen development
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0007165	signal transduction
biological_process	GO:0042908	xenobiotic transport
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0034599	cellular response to oxidative stress
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0016556	mRNA modification
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0009409	response to cold
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0015979	photosynthesis
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0009987	cellular process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0009963	positive regulation of flavonoid biosynthetic process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051604	protein maturation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0042761	very long-chain fatty acid biosynthetic process
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0046520	sphingoid biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009790	embryo development
biological_process	GO:0006855	drug transmembrane transport
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009543	chloroplast thylakoid lumen
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0009536	plastid
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0005795	Golgi stack
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0018454	acetoacetyl-CoA reductase activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0045703	ketoreductase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008281	sulfonylurea receptor activity
molecular_function	GO:0008559	xenobiotic transmembrane transporting ATPase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004746	riboflavin synthase activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0003756	protein disulfide isomerase activity
molecular_function	GO:0033743	peptide-methionine (R)-S-oxide reductase activity
molecular_function	GO:0070191	methionine-R-sulfoxide reductase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0043621	protein self-association

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo25196	0.79	Barchart \| Table
Spo23712	0.79	Barchart \| Table
Spo19288	0.78	Barchart \| Table
Spo11688	0.77	Barchart \| Table
Spo25008	0.77	Barchart \| Table
Spo21808	0.77	Barchart \| Table
Spo04200	0.76	Barchart \| Table
Spo16996	0.75	Barchart \| Table
Spo23154	0.75	Barchart \| Table
Spo06953	0.74	Barchart \| Table
Spo02696	0.74	Barchart \| Table
Spo14914	0.74	Barchart \| Table
Spo09769	0.73	Barchart \| Table
Spo10835	0.73	Barchart \| Table
Spo23558	0.73	Barchart \| Table
Spo25717	0.73	Barchart \| Table
Spo22999	0.72	Barchart \| Table
Spo02573	0.72	Barchart \| Table
Spo15585	0.72	Barchart \| Table
Spo05942	0.72	Barchart \| Table
Spo15390	0.71	Barchart \| Table
Spo23332	0.71	Barchart \| Table
Spo21446	0.71	Barchart \| Table
Spo00872	0.71	Barchart \| Table
Spo15461	0.71	Barchart \| Table
Spo05307	0.71	Barchart \| Table
Spo09798	0.70	Barchart \| Table
Spo00214	0.70	Barchart \| Table
Spo11417	0.70	Barchart \| Table
Spo03906	0.70	Barchart \| Table
Spo22683	0.70	Barchart \| Table
Spo00121	0.69	Barchart \| Table
Spo00667	0.69	Barchart \| Table
Spo02665	0.69	Barchart \| Table
Spo04725	0.69	Barchart \| Table
Spo08097	0.69	Barchart \| Table
Spo08114	0.69	Barchart \| Table
Spo09335	0.69	Barchart \| Table
Spo09554	0.69	Barchart \| Table
Spo11524	0.69	Barchart \| Table
Spo12302	0.69	Barchart \| Table
Spo14938	0.69	Barchart \| Table
Spo20106	0.69	Barchart \| Table
Spo20930	0.69	Barchart \| Table
Spo23076	0.69	Barchart \| Table
Spo24046	0.69	Barchart \| Table
Spo24081	0.69	Barchart \| Table
Spo25692	0.69	Barchart \| Table
Spo11668	0.68	Barchart \| Table
Spo12022	0.68	Barchart \| Table
Spo00205	0.68	Barchart \| Table
Spo15014	0.68	Barchart \| Table
Spo15317	0.68	Barchart \| Table
Spo05125	0.68	Barchart \| Table
Spo04653	0.68	Barchart \| Table
Spo16643	0.68	Barchart \| Table
Spo25985	0.68	Barchart \| Table
Spo21144	0.68	Barchart \| Table
Spo21155	0.68	Barchart \| Table
Spo01252	0.68	Barchart \| Table
Spo23800	0.68	Barchart \| Table
Spo23857	0.68	Barchart \| Table
Spo24016	0.68	Barchart \| Table
Spo27364	0.68	Barchart \| Table
Spo00539	0.68	Barchart \| Table
Spo09387	0.68	Barchart \| Table
Spo08407	0.68	Barchart \| Table
Spo08351	0.68	Barchart \| Table
Spo30004	0.68	Barchart \| Table
Spo00677	0.67	Barchart \| Table
Spo08997	0.67	Barchart \| Table
Spo13981	0.67	Barchart \| Table
Spo23327	0.67	Barchart \| Table
Spo02918	0.67	Barchart \| Table
Spo13281	0.67	Barchart \| Table
Spo04433	0.67	Barchart \| Table
Spo12301	0.67	Barchart \| Table
Spo16960	0.67	Barchart \| Table
Spo02232	0.67	Barchart \| Table
Spo09536	0.67	Barchart \| Table
Spo13209	0.66	Barchart \| Table
Spo01054	0.66	Barchart \| Table
Spo03066	0.66	Barchart \| Table
Spo20849	0.66	Barchart \| Table
Spo26610	0.66	Barchart \| Table
Spo09232	0.66	Barchart \| Table
Spo21660	0.66	Barchart \| Table
Spo08478	0.66	Barchart \| Table
Spo06637	0.66	Barchart \| Table
Spo18111	0.66	Barchart \| Table
Spo00743	0.66	Barchart \| Table
Spo12682	0.66	Barchart \| Table
Spo10491	0.66	Barchart \| Table
Spo05032	0.66	Barchart \| Table
Spo26975	0.66	Barchart \| Table
Spo05841	0.65	Barchart \| Table
Spo25783	0.65	Barchart \| Table
Spo26697	0.65	Barchart \| Table
Spo24325	0.65	Barchart \| Table
Spo01983	0.65	Barchart \| Table
Spo02480	0.65	Barchart \| Table
Spo00256	0.65	Barchart \| Table
Spo11929	0.65	Barchart \| Table
Spo13714	0.65	Barchart \| Table
Spo23249	0.65	Barchart \| Table