Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GAATTAAATTAATCAAGTAGCAAACAAAATAATGACACATTTGAATAGGGCGGTGATGCCCCACATGAGTCGGTCTCACACACTCTATAATCTATATATATATATATATATATATAATCTACCCAACCCTTGATCATTAACATTCTCCTACAATATTTATCTCCCTATATTTTCTCACCATTCTTATTCATCCCATACTATTATTATCTTGGGAGATCCAAGTTCATTCTAGTGTTAGTGTATCGATCGAGATGAATTCATTCAAGTTATTGTACACAGCAATGTTGAGGATTCTAGTATTATTATCTATGTTGAGTGGTTTGTATGTCTCGGGTACCACCTTCACATTAGTAAACAAATGCGACTACACTGTTTGGCCGGGGATACTAGCAGGAGCTAGTAGCCCTAAGTTGGATAGTACCGGGTTTGAGCTCCAACACGGTGGAGCTCGAACCTTCCAGGCTCCCTCGGGTTGGTCGGGTCGGTTTTGGGGTCGGACTGGCTGCAGTTTTGACGACGCAGGTCAAGGCACTTGCGCCACTGGAGACTGCGGGTCCGGAACCGTGGAGTGCAACGGGAGCGGGGCTAAACCACCGGCAACCTTAGCGGAATTCACTTTAAACGGCAGCGGTGGGCAAGATTTCTATGATGTCAGCCTCGTCGACGGCTATAACATCCCGATGATCGTGGAGACGAACGGAGGGTCAGGAGGGTGCGAGACAACAGGGTGCTTGGTGGATCTGAACAGGCGGTGCCCGAATGAGTTAATGGCGGAAGGAGGTGGCGCGTGTAGAAGCGCGTGTGAGGCGTTTGGAACACCGGAGTATTGTTGTAGTGGGGAGTTTGGAACACCAGACAAATGTAAGCCGTCGATGTATTCAGAACTGTTTAAGAACGCGTGTCCAAGGGCATATAGTTACGCGTATGATGATGCGACTAGTACGTTTACTTGCAGCGCTGGGGATTATACCATCACCTTCTGTCCCTCTTCTCCAAGGTACCGCCTCTTTTCCATACATTTCTCCCCTCTCTCTTTTCATTAATCATTACGGAGTACTACCCTCTTGTTGTTATTTTAACAAACAGAGTTTATTTTACAATGAATCGATCGAGTTGCAGTCAAAATATCAAGTTACTAGTAAAAAAAAAAGTTGATTAAAGTTTCAGAAACAAATAAGTCAGGTAAATAAAAGGGGAAAAGGTTTGATCGATCTGAACAACAGAGTTCGTTTTGGTCGTTGGATTATAGAATTTAGACTTTTACTACTATTAGATCAAATTTCGTTTATATCATTATCTGGTGGTATCTTATCTTATGGGGTAATCTAAGACAAAACGTATCAATATAATACGGAGTAGTATTGACTATTGAGTGTATATATGGTGTCGGTGTATTTTTAATTTATGTGTTATACTTGATGTAGTATTTAATTTTGAGGGGCATCATCTTTTCAACTAATAAAATTTGCAATATTTTCTAAATTATTGCAGTCAAAAATCGTCAACGGACAGTTCAACAAGTAACATTGGAGCAACAGGAGGTTCTGCTGGTTCCGGTTCTGATTCCAATACTAGCACAGGATCGGGTACAGATACGGGTACGGGTATGGGTACAGGAACAAGCAGTACAGGTACAGGTACAGGGTCATTGATGGGGGACGGGTCATGGTTAACCGACTTAGCCTCTGGAGACTCTTCAAATACAAGACATCCTACCTTTGGTTTACAATTAGCATTCCTCTTCTTTGTCATCACCTTTTTGCCCACCTCTCTTTTCCAACTGTAGTAGAGAGAAAGGGGATCATCCATTAATTAGTTAGTTCGTTGGGAGGCCTTCAATGGTTGGCAACACAGAATTATTATCTTGAATCGAGATTATCATCAAAATATTTGATCGGGTTGATAACAAGCTAACTTAGTTAGTAAAGTCTTCAATTCAGAGATATATATATATATATATATATATATATATATATATAGGACAAGGGATCCTGATTGGGTTCCCGTTTTTGACTCTTTGGAAACTCAAAAGATCCAAGTTAGAATGGATCATCGATCGCCGGATAGTAGGAGGGTATTTGGGCAGACACGTTCATGAACAAGATCGATCAAAGCACGTTATTGGTTAAGCAATATTATTGAACAAGCTTTGAGCTAAAGTTTAAAGCTCTTGCATTATTCAAACAACGTTGTGTTTGACTTGTTAGCGTTCAAACTCTCATTTATAATTGCTTCTTTGTAACCTGTTAATATGGTATAGTAGCTTGTTTATAAGTCGTTACTAACTCATATATGTTTTCATAAGTATAAAAATAATATGTTTCTCTAAAAGAAATATTTACCAAGTATAATTTTAGTTATAAATTTATACATATCATTTGGTGTAATGCTAAAGTCCAATTTTTGTATGGAAGAAAATGTGAAGTTAGGGAATTTAGACTTCATTACCGC GAATTAAATTAATCAAGTAGCAAACAAAATAATGACACATTTGAATAGGGCGGTGATGCCCCACATGAGTCGGTCTCACACACTCTATAATCTATATATATATATATATATATATAATCTACCCAACCCTTGATCATTAACATTCTCCTACAATATTTATCTCCCTATATTTTCTCACCATTCTTATTCATCCCATACTATTATTATCTTGGGAGATCCAAGTTCATTCTAGTGTTAGTGTATCGATCGAGATGAATTCATTCAAGTTATTGTACACAGCAATGTTGAGGATTCTAGTATTATTATCTATGTTGAGTGGTTTGTATGTCTCGGGTACCACCTTCACATTAGTAAACAAATGCGACTACACTGTTTGGCCGGGGATACTAGCAGGAGCTAGTAGCCCTAAGTTGGATAGTACCGGGTTTGAGCTCCAACACGGTGGAGCTCGAACCTTCCAGGCTCCCTCGGGTTGGTCGGGTCGGTTTTGGGGTCGGACTGGCTGCAGTTTTGACGACGCAGGTCAAGGCACTTGCGCCACTGGAGACTGCGGGTCCGGAACCGTGGAGTGCAACGGGAGCGGGGCTAAACCACCGGCAACCTTAGCGGAATTCACTTTAAACGGCAGCGGTGGGCAAGATTTCTATGATGTCAGCCTCGTCGACGGCTATAACATCCCGATGATCGTGGAGACGAACGGAGGGTCAGGAGGGTGCGAGACAACAGGGTGCTTGGTGGATCTGAACAGGCGGTGCCCGAATGAGTTAATGGCGGAAGGAGGTGGCGCGTGTAGAAGCGCGTGTGAGGCGTTTGGAACACCGGAGTATTGTTGTAGTGGGGAGTTTGGAACACCAGACAAATGTAAGCCGTCGATGTATTCAGAACTGTTTAAGAACGCGTGTCCAAGGGCATATAGTTACGCGTATGATGATGCGACTAGTACGTTTACTTGCAGCGCTGGGGATTATACCATCACCTTCTGTCCCTCTTCTCCAAGTCAAAAATCGTCAACGGACAGTTCAACAAGTAACATTGGAGCAACAGGAGGTTCTGCTGGTTCCGGTTCTGATTCCAATACTAGCACAGGATCGGGTACAGATACGGGTACGGGTATGGGTACAGGAACAAGCAGTACAGGTACAGGTACAGGGTCATTGATGGGGGACGGGTCATGGTTAACCGACTTAGCCTCTGGAGACTCTTCAAATACAAGACATCCTACCTTTGGTTTACAATTAGCATTCCTCTTCTTTGTCATCACCTTTTTGCCCACCTCTCTTTTCCAACTGTAGTAGAGAGAAAGGGGATCATCCATTAATTAGTTAGTTCGTTGGGAGGCCTTCAATGGTTGGCAACACAGAATTATTATCTTGAATCGAGATTATCATCAAAATATTTGATCGGGTTGATAACAAGCTAACTTAGTTAGTAAAGTCTTCAATTCAGAGATATATATATATATATATATATATATATATATATATAGGACAAGGGATCCTGATTGGGTTCCCGTTTTTGACTCTTTGGAAACTCAAAAGATCCAAGTTAGAATGGATCATCGATCGCCGGATAGTAGGAGGGTATTTGGGCAGACACGTTCATGAACAAGATCGATCAAAGCACGTTATTGGTTAAGCAATATTATTGAACAAGCTTTGAGCTAAAGTTTAAAGCTCTTGCATTATTCAAACAACGTTGTGTTTGACTTGTTAGCGTTCAAACTCTCATTTATAATTGCTTCTTTGTAACCTGTTAATATGGTATAGTAGCTTGTTTATAAGTCGTTACTAACTCATATATGTTTTCATAAGTATAAAAATAATATGTTTCTCTAAAAGAAATATTTACCAAGTATAATTTTAGTTATAAATTTATACATATCATTTGGTGTAATGCTAAAGTCCAATTTTTGTATGGAAGAAAATGTGAAGTTAGGGAATTTAGACTTCATTACCGC ATGAATTCATTCAAGTTATTGTACACAGCAATGTTGAGGATTCTAGTATTATTATCTATGTTGAGTGGTTTGTATGTCTCGGGTACCACCTTCACATTAGTAAACAAATGCGACTACACTGTTTGGCCGGGGATACTAGCAGGAGCTAGTAGCCCTAAGTTGGATAGTACCGGGTTTGAGCTCCAACACGGTGGAGCTCGAACCTTCCAGGCTCCCTCGGGTTGGTCGGGTCGGTTTTGGGGTCGGACTGGCTGCAGTTTTGACGACGCAGGTCAAGGCACTTGCGCCACTGGAGACTGCGGGTCCGGAACCGTGGAGTGCAACGGGAGCGGGGCTAAACCACCGGCAACCTTAGCGGAATTCACTTTAAACGGCAGCGGTGGGCAAGATTTCTATGATGTCAGCCTCGTCGACGGCTATAACATCCCGATGATCGTGGAGACGAACGGAGGGTCAGGAGGGTGCGAGACAACAGGGTGCTTGGTGGATCTGAACAGGCGGTGCCCGAATGAGTTAATGGCGGAAGGAGGTGGCGCGTGTAGAAGCGCGTGTGAGGCGTTTGGAACACCGGAGTATTGTTGTAGTGGGGAGTTTGGAACACCAGACAAATGTAAGCCGTCGATGTATTCAGAACTGTTTAAGAACGCGTGTCCAAGGGCATATAGTTACGCGTATGATGATGCGACTAGTACGTTTACTTGCAGCGCTGGGGATTATACCATCACCTTCTGTCCCTCTTCTCCAAGTCAAAAATCGTCAACGGACAGTTCAACAAGTAACATTGGAGCAACAGGAGGTTCTGCTGGTTCCGGTTCTGATTCCAATACTAGCACAGGATCGGGTACAGATACGGGTACGGGTATGGGTACAGGAACAAGCAGTACAGGTACAGGTACAGGGTCATTGATGGGGGACGGGTCATGGTTAACCGACTTAGCCTCTGGAGACTCTTCAAATACAAGACATCCTACCTTTGGTTTACAATTAGCATTCCTCTTCTTTGTCATCACCTTTTTGCCCACCTCTCTTTTCCAACTGTAG MNSFKLLYTAMLRILVLLSMLSGLYVSGTTFTLVNKCDYTVWPGILAGASSPKLDSTGFELQHGGARTFQAPSGWSGRFWGRTGCSFDDAGQGTCATGDCGSGTVECNGSGAKPPATLAEFTLNGSGGQDFYDVSLVDGYNIPMIVETNGGSGGCETTGCLVDLNRRCPNELMAEGGGACRSACEAFGTPEYCCSGEFGTPDKCKPSMYSELFKNACPRAYSYAYDDATSTFTCSAGDYTITFCPSSPSQKSSTDSSTSNIGATGGSAGSGSDSNTSTGSGTDTGTGMGTGTSSTGTGTGSLMGDGSWLTDLASGDSSNTRHPTFGLQLAFLFFVITFLPTSLFQL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo06316.1 vs. NCBI nr
Match: gi|902205157|gb|KNA15106.1| (hypothetical protein SOVF_101300 [Spinacia oleracea]) HSP 1 Score: 662.1 bits (1707), Expect = 5.200e-187 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1
BLAST of Spo06316.1 vs. NCBI nr
Match: gi|731337689|ref|XP_010679923.1| (PREDICTED: thaumatin-like protein 1b [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 530.4 bits (1365), Expect = 2.300e-147 Identity = 270/340 (79.41%), Postives = 300/340 (88.24%), Query Frame = 1
BLAST of Spo06316.1 vs. NCBI nr
Match: gi|870858072|gb|KMT09598.1| (hypothetical protein BVRB_6g130520 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 522.3 bits (1344), Expect = 6.400e-145 Identity = 260/323 (80.50%), Postives = 288/323 (89.16%), Query Frame = 1
BLAST of Spo06316.1 vs. NCBI nr
Match: gi|566187822|ref|XP_006379282.1| (hypothetical protein POPTR_0009s13510g [Populus trichocarpa]) HSP 1 Score: 393.3 bits (1009), Expect = 4.500e-106 Identity = 213/345 (61.74%), Postives = 259/345 (75.07%), Query Frame = 1
BLAST of Spo06316.1 vs. NCBI nr
Match: gi|764525872|ref|XP_011457931.1| (PREDICTED: thaumatin-like protein 1b [Fragaria vesca subsp. vesca]) HSP 1 Score: 392.5 bits (1007), Expect = 7.600e-106 Identity = 210/333 (63.06%), Postives = 253/333 (75.98%), Query Frame = 1
BLAST of Spo06316.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R6H8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_101300 PE=4 SV=1) HSP 1 Score: 662.1 bits (1707), Expect = 3.600e-187 Identity = 336/336 (100.00%), Postives = 336/336 (100.00%), Query Frame = 1
BLAST of Spo06316.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCB6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g130520 PE=4 SV=1) HSP 1 Score: 522.3 bits (1344), Expect = 4.400e-145 Identity = 260/323 (80.50%), Postives = 288/323 (89.16%), Query Frame = 1
BLAST of Spo06316.1 vs. UniProtKB/TrEMBL
Match: U5G448_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13510g PE=4 SV=1) HSP 1 Score: 393.3 bits (1009), Expect = 3.100e-106 Identity = 213/345 (61.74%), Postives = 259/345 (75.07%), Query Frame = 1
BLAST of Spo06316.1 vs. UniProtKB/TrEMBL
Match: B9HR81_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s13510g PE=4 SV=2) HSP 1 Score: 391.0 bits (1003), Expect = 1.500e-105 Identity = 210/345 (60.87%), Postives = 255/345 (73.91%), Query Frame = 1
BLAST of Spo06316.1 vs. UniProtKB/TrEMBL
Match: M5VNX6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008035mg PE=4 SV=1) HSP 1 Score: 390.6 bits (1002), Expect = 2.000e-105 Identity = 217/350 (62.00%), Postives = 254/350 (72.57%), Query Frame = 1
BLAST of Spo06316.1 vs. ExPASy Swiss-Prot
Match: TLP1_PYRPY (Thaumatin-like protein 1 OS=Pyrus pyrifolia GN=TL1 PE=1 SV=1) HSP 1 Score: 270.8 bits (691), Expect = 2.100e-71 Identity = 130/237 (54.85%), Postives = 165/237 (69.62%), Query Frame = 1
BLAST of Spo06316.1 vs. ExPASy Swiss-Prot
Match: PR5_ARATH (Pathogenesis-related protein 5 OS=Arabidopsis thaliana GN=At1g75040 PE=1 SV=1) HSP 1 Score: 270.0 bits (689), Expect = 3.600e-71 Identity = 135/237 (56.96%), Postives = 159/237 (67.09%), Query Frame = 1
BLAST of Spo06316.1 vs. ExPASy Swiss-Prot
Match: TLP1_PRUPE (Thaumatin-like protein 1 OS=Prunus persica PE=2 SV=1) HSP 1 Score: 262.3 bits (669), Expect = 7.400e-69 Identity = 134/242 (55.37%), Postives = 163/242 (67.36%), Query Frame = 1
BLAST of Spo06316.1 vs. ExPASy Swiss-Prot
Match: TP1A_MALDO (Thaumatin-like protein 1a OS=Malus domestica GN=TL1 PE=1 SV=1) HSP 1 Score: 261.2 bits (666), Expect = 1.700e-68 Identity = 128/241 (53.11%), Postives = 161/241 (66.80%), Query Frame = 1
BLAST of Spo06316.1 vs. ExPASy Swiss-Prot
Match: TLP_PRUAV (Glucan endo-1,3-beta-glucosidase OS=Prunus avium PE=1 SV=1) HSP 1 Score: 255.0 bits (650), Expect = 1.200e-66 Identity = 126/245 (51.43%), Postives = 158/245 (64.49%), Query Frame = 1
BLAST of Spo06316.1 vs. TAIR (Arabidopsis)
Match: AT4G38660.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 348.2 bits (892), Expect = 5.800e-96 Identity = 198/347 (57.06%), Postives = 236/347 (68.01%), Query Frame = 1
BLAST of Spo06316.1 vs. TAIR (Arabidopsis)
Match: AT4G24180.1 (THAUMATIN-LIKE PROTEIN 1) HSP 1 Score: 333.6 bits (854), Expect = 1.500e-91 Identity = 157/229 (68.56%), Postives = 187/229 (81.66%), Query Frame = 1
BLAST of Spo06316.1 vs. TAIR (Arabidopsis)
Match: AT4G36010.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 313.5 bits (802), Expect = 1.600e-85 Identity = 161/253 (63.64%), Postives = 183/253 (72.33%), Query Frame = 1
BLAST of Spo06316.1 vs. TAIR (Arabidopsis)
Match: AT1G75800.1 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 305.4 bits (781), Expect = 4.300e-83 Identity = 170/288 (59.03%), Postives = 206/288 (71.53%), Query Frame = 1
BLAST of Spo06316.1 vs. TAIR (Arabidopsis)
Match: AT1G20030.2 (Pathogenesis-related thaumatin superfamily protein) HSP 1 Score: 299.3 bits (765), Expect = 3.100e-81 Identity = 165/286 (57.69%), Postives = 196/286 (68.53%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo06316.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo06316.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo06316.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo06316.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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