Spo06380 (gene)

Overview
NameSpo06380
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionU1 small nuclear ribonucleoprotein
LocationSpoScf_01566 : 5699 .. 14489 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCCGCCTTCCTCGATTTCTCTCTCCTCTTCTTTCTTCACTCAAACTGATTAGGGCATCGCAATTTGCTCCCTTTCCCTCTCATTTCTTCTGCTGCAACTATTTTTCTGCTAGATATTGGTAAACATATTTGACGACAATGATGCTATCTGGCGATATACCTCCTAATCAATCCATTTACGTTAAAAATCTCAATGAGAAGGTTAAGAAAGAAGGTAAACCCTAATTTTCCGCACTCTTTTTGAGTTTAGCAGCCTTCATTTTTGCAAACCCATGTTTTTATACTTTTTGTTTGCTTAGTCGTCTTCAATTTCAAACCTGTCGGTATCTAATCTATCTGGCATTTGCCTTTAATTGTACAATTTGTATAATTTAGGCTATCGATTTCCCCCATTTTTTTTTTTTACTTTTTTATAATTGAATCAGTTCATTTAGCAATTCAGAGATGAGAGATGTAATGGTGTCAGTGTGTGTTAATTTAGTTGCTAATTCAAGTATTGGAATTTGTAGCATGTGAGAAATTCTTTTGATTTTGACAGAATTGAAGAGGTCGCTTTACTGCTTATTCTCTCAGTTTGGGAGGATACTGGATGTCGTGGCTTTGAAGACGTCTAAACTTCGAGGTCAAGCTTGGATTTGCTTTAGTGAAATTACTGCGGCGAGTAATGCTGTTCGGCAAATGCAGAACTTCCCTTTCTATGATAAGCCTATTGTAAGTACATCCATTTACAGCTGTGTACTCCGTCGTTGCTACACATTGGGTTTTCTTGCTCTGAATTTGAGACTGTCACTATCTAGAATGATATTGTGGTTAACAATCTAGAACTGCCTGTCTAGATAAGCTATCACTATACCTTGTAAAGAATTGCAGAAATCTCTTCTCTTCCTTGTATCTTGCCTTAATGCAACATGCTCTTGCTGATAGCCTGATACACGACATTCTATTCGCCCTTCTTGTGTTGCCCACTATTTCTTTCTGGATCATCCAAGCTATTTAACCGCATTTTGTTTTTCTTATTCAGTAGGCCAACACTAAAAATATACATGTCCTCATAAGCTACTGGCTAAGAAATAATTTTAGTTGTGCGACCAATGCTAGTTCAATCAAATTCTATGATTCACATACTTGTTAAACAATGTTGTAGTGATGAACACGTTCTAGTTTGCATGGTTCATATAAGGCTCCGGTTGGTTTGGTGTAAAACGTATTCATGTAAAATTAGTTTAGAATTATGTTTTCCCTTGAAAACAGTGAAAACGTTTGGTTTGACGTTTTACACCAATCGAAATGGAGCCTAAGTGGAAAAAATATAGCAAGTGCGTGCTACACTCTGAGCTGGAGTTCTCATATCACTAGATGTGTCAGCTTGTGAAACTTGAAGGCGAGGGATGAGGAGAGAAAAGAGTATACTAATGACTCAAATGAGAATAAGAAAGATACATGGTAGCAACAAGATTGGACACAGCAATCTACTAAAATTGGTATGAGATCCTAGACGGTGGGGGGCATTTGGTTATCTGATTTGTACTGATGGGCACAGTAATACAACCAAGTACAAGCTGTACAACTTCCAAGATTATGAGTCTTCCACTAGTACATAACTTTTGTTTGATTAGGAGATTGCCAATACATATAGTTCAACTGGTCTAGCCTTTGTTTACAAATTTAACATATGGACCTCAGTAGTTAGTTGTTTGCAGCTGTGAACTACTGACTTCGGGGTGTACTAAAAACTACATGGGCAAACTGCAAGTGGTTTTAGCTGAACATATACTCTTGAGTGATGTCTTTTTGTAGTGCACTTCATGTATTGACTTATGTGGTGTTAATTTACTTGTTCCTCCACCCTGTATTCCCGTTGCTATTGTACTCTATATATTTTTGTGACTGGTTGAGAATATAGGTGACAATAAACATTCATTTTGAAATCCACATGTTAAGGCTCAAAATATATTGCCATTATTGAACATTTGACAACTTAAAGTGGACAATGAATCAGATTATTTGGCTTAGGCTTCAAAGAGAATTAATCATCTTGAAATATAACATTTTGTATATTATCTCAAAGTCCATGCTTACTACAGATTTACAATTCTATAGACTATTTATTTTCTGGTGCTGGAAACTTTGAATAACCATCCTCCACACTCCACAGTATGTAGTGTTGGGCGGTTGGGCCTGTTGGCCTGACCTCCCAATCAGTAACGGGTCTTAGTTCAGATAAACTGCAAGCTCTCACATGAAAACAGTACACATGCTAGCCTGTCTAACATTGTCTTGTTCTGCTTTTTTTCATTTTGTCAGCGGATACAATACGCAAAAGCCAAGTCAGATTGTATAGCGAAAGCAGAGGGGACTTTTGTTCCTAAGGAAAAGAAGAAGAAACAACAGGAGAAGGGTAATGACCCAATTCTGTTCTTTGACTTATTGTATTGTCAACATTTTCATGTGGTTAGCAATTTATTGATCAGTATACTTGTTAGAAAACCATGGTTACACAATTATTTGTCACATTTTGTACCTAATCATTATTGTCTGATAGGGAAAATCTTAGAAAATTGAGTGGCTTGAAAGTCTAAAGGAGCTGTGGGAGATTAATGTTTCATGTGTCTTTCACCACCTCTCAAACTCCAAAATATTAAGAGAATTGAAGGAAAGGTATCAATTGAGAGCTACCAATACCTTGCATGCAGTAGTTGTCCCGAAGAACATATCTTAAGCCCCAATCTTTTGCATCTGAATTTGGTGGATACATGCTTGTTCAATTGACATCTAGGGTTTGATTTAGGCTTACCTGATTCGTGGTTCGCTTCGGAATGGGTTCGCGATTCGCGGGTTGGTTGATCTTAGGTTCGCTAGAGGGGTTTGGAACTTTTTGTTTCCGTGGTTTTTTTTTAAAAAATATTCAAAATATCATACTCTGTTCCAACTTTATTGCATCACGGGGGTTTTGTTGATGGAAAAAGTAGAAGAGAGAAATATAAATATACAAACTTGCCCATGAGTATATAAATCGACAAGAGTAAACATGCAAGGCATATTGGTATTAGTAGGGTAAAAGCAAAAAAAATTATTTCCTAAAATGGATATGGTTTTATGAAACTTCCTTAAAAAGGCAAAAGGTGCAATAATATTGGAACGGAGGAAGTGTATTTTTTATTTTATTATTCATACTAAAAAAAACAGTTAATAAAATAAAGGAAAGAAGAAACAACCCAGATGCATAAGCATTAACCTTTCACATCCGTTATAAAACCATAAAAAAATAAAAAAGTCAAAGCCCACCAATTCACCACTAAGAGTAAACAATGCACATGAATAAAAATCGACGAAATGGAAATCCACTTGCAGCCATTTGGACTTTGAAAAGACAAAAGAACGACAATAACAATTGACAATCGCAATCAGCATGTATTTCCTTATAAAACAGAAGCCCCGACATTTTTTTTCCTTCTCTTGCCTTCCCTGACCTTCAATCTGTAAAACTAGGGTTTCGGATTCGGCACGACAATACCAGCACTTTGGTTCGCGAACCACAGGGAATTGGTTTGCTGAAGAACTGCGATCCGGTACGGGCGAACCAATTCGAGATCCGGTAACACTGGTTTGATTACTCAAGTCATTGGTCTGAAACTTTTGTTCATCGGGGATTCCCTCTAAAATATTGAAATAGACCAATTGATTTGTCCTTCACCAACCACTAGAACCTGAACATACAGTTAAAAATTTCAACTTATAGGTTATATACTGAAGTAATTTAGTGTGTTCTCAAATAGTAAATTATGGGAAACGTAGGTCAATTCTATTTTTTGGCCGGGGGGTTGGTGGGGGGAAGGAGATTGGATAATGTGGTGACCATGGTTTGAACCATGCAGGCTACTGATTTGACGTCCTGGAAGTTTCACAGGTGTGATTTAGATGAGTCCAGGGAAGAAACTTCTTTTCACTAGTACTGAAATACTGATTGGGCACAAGAGACACTTGCTCGGCATTGTGTGCCCAAAAAAAATATCACAGTGCTAAAAAGTTAAACAGTATATAATTTGAAAGTGACGTTGGACAAGTTTGTTTGAAATTGGGTAGGAGTATATATTAAGAACACTGGGTAGTATTATCTTGGAGAGGAATAGTTGGTCTGATGGTATTTTAGAGTCCTGCAGCTGTTATCTTCTTCGTGGACCCTCATGTAAGCGACATTGTGTTGAAGGGGTGAAGCCATGAAGGTATATAAAATTGGTCAAATATAATTCTTTTGGAAGGGGAATTTTGGCAAACATGAAGTACTATTATAGTTTTGATGGATTAGATGCTCACAAACTGCTAGCTACTAACAAGTTATTAGATAGTATCTTTGCTAGCTAGAATTGCTAGCTAGAATTGAAGTTGAAACTTACAAGCATATGGAAAGCAGAGCAGCTTTTCACCATCAGGCTATTAGAACTTGACCAGCTCTTTGTGCCTTTTTACTTTAGTTTTATTTGTCCTGGGCATTAGCGGATTAACCCCCACCCCTTCTTCATTGAATCTTGGCTAATAGTATTAGTCTATTGTGTCTTAGCTTGCAATTCTTTGATCTAGTAATGTTAAAGATCTTGGTCCTTGCCATTTCCTAGAAATGGAGGGAGTAGTACACAAGGAAAAATCAAAAAGGGGACATGAGAAAAGGAGGCAGTTAGGCATGTTAATCATTTGTCTAAGTATTCGATCTAGCGGTTAGCCAACTTGGCAACCTGAATGTTCTAGGAGAGAGAAGAATATGGGGTAGCAATGTAGCATGAAAAAGGCCGTAATAAAGATAGTTTGACAATTTGGCTTAATGTTAATAAAAGTACAACTAAACTTTTTTATTGAAAAAGAGTAAATCAAAATTTAGCAGAGATCATAATGTGAAGATTTGAAGAGAGATAAAACGGGACTTCAGGAAATTTTGGCCACTTAGCTAACTATTAGGTATCTAACAATTAGCCAAGTAATAAGATGAAAGAGTTACTATTTGGCTAACTGTTAGGTATCTAATAGTTAGCAAAATGACCAAAATATAGAGCAGATGGTAGAAAAGGACAGCTTGTGGAAGGAATCAACATGAACCTTTTGATTGTTTGGCTATCTACAGAATAATAGTTAGCTAAATTGACATTTTTGAGAAAGATTACATGGATACTTCTATTATCAGATATATATCCTAGAGATCAATGCCTAGGACTAATTGTGGGACCAAAGATTCAGCTTGCATGCCTCGATTTTGCCAAAAATTTGCCAAGGTCGGTCATTTTCAAATAAGAGAAAGATTGACTTCCAATCTTGCAGATGCTCCCTTCAGAACCATGCCAGCTCTCCAATTGCCATTAAGATAGTCCGCCTTTTCGATCATATGATTGTAAGATCACTATTAATCTTTGATCTACAAAGTGGAAGGCAATCTGGATTGGCTCAGGATAGTTTTCGTGGTAGGATCGTAGTAGGATATTTTGAATCATACATGATCTAACAGGCTCATGTTTTTTGTTTATTAGATCATTTATGATTGTAAATATTCGTGTATAGAGCATAATAAGCATGTGTATTAATGAACTAGTGGTGGTTCATAGGAAGTTAGACCTTTGATCATACATGTGTACTGTGTAGTAATGGTTTATTATTGCCCAATAGTGAGAGCTGATTTTTGAGGTCATAACTTAAAACTCTTTTTGCTTCATCCATAATGTGGGATAATCTGGACAGAAGGTGAAGTGAAGCTAGAAATTAGTATGTATGTACAAGTGCCCCTTTAAAGGCTGTGTGTAAGTGTGCAACTCATTTTTTGGTTGCTAGCCTGATTGAAATAGAGAAGGGAAGTCTTTTTTGTCCCAATTATTCTCTTATGTTTGCCAGATTCTGTAGTGTTGGTACTATATGTGACAATTATTTCATTATTGTAAGCTACATTTCAATTTTGTGAAAGCATTTTAATGGAAACTCCCCGTATGATTTTCTTTTTGGATAGAATTTAAAGGGAAACCTCCCTTCATGTCGACACAATGATCGTCGTATATTTGTGCAAAATAAATGAGAAGGCAAAGACAAATCTTTGGAGGTCCCAATTATCCTCTATGTGCATTCATTAGTCACTGGAGCATGTATGAGATCCTCTTGGGGTTTGAGCATCTTCAATGACAAATTAGAGTGTATGGTCTAAGACTACGTAAGACAAAGGTTGCAAACTTGCAATCATGGCCATGACGAGTACCCATTAATCCGTATTTAATCACCAAACGAATCTTGCTTATTTCAGAGTTTATGGCTCATGCATGTGCGTAGATCATCTTCTATTCCCTCCCCCTTTTTGTAGTAATGGGCTACTACTCAAAATTTGAACTTATCCATGGTTATAGACCTTGCAGTAGTAGGGTTAGTGGTAATATGTTGTCCATGTATGCGTATCTCAAATTTAGTTAATGCGCTACTACTCAAAATTTTGCTTTCTTGAGGCTCCGTTTTATTCGACTTATTTTTATTGAACTTATATTATCTGAACTTAACTGAACTTATCTCATTATCTGAACTTATTTTATCTGAAAAAAGCTTATTTTGTTTATTTGTGTGTAAAAGTATCTGAAAAAACTTATTTTTTCTGAACTTATATTATTTGAACTCATCTGAACTTAACGGACTTATCTGAACCTAACTGAACTTATCTAAACTTATTTTGTCTAAAATAAGTCAAAATAAGTCGAACAGAGCCTTAATATTTTTCTTGTAGTCTTGCAAAGTGCAGTCCTTAGTGTTATAAGTTGGGTTTTCTCGCCCTTCTGAAAATTAAAGGATATAATTTGTGCAACAAAAAGTTTTTAGTGGCAGGGAAATCTCAAATAAGTACAGCAAAGATTCATGATATGCAAGCAACCTTTTAAAGTTACTTGTCATCTCATACTAGTGGTCCCAAAATCTCTTTTAAATCTCATTCCAAAGACTATTGTTAGAAAATTGAACAAAGCCTCGTGGATTGCTCAGTAGCTACTCCCTTCTGGATTAGTGAAATGACACTTTAGTCTAGATACTTTTGTGAGCTAGACCTTCTTTTGCCTTCATTGGCAATCAAGAAAGTATATGTTATTAGCCTCAAATTGCCCTTTTAACTTGCAATAAATCTGTGCCTCATTCCTGTATCCTCTATAGCACTTTTGGACGGTGGATGTGGATTTCAGTAAAATTTGAAGGGAATGCTTCTATTGTTGCCGAAGGGTCTTTTAATAGGCTGATGATCATTGGTTTCAAATATCACGAATCATGACCCATTGTGTGGTCTGAAGAAGTCTCTTATGTCTTAATCAGCCATTTGGATTTATACTTCTATATTAGGGTGGTTACATAATTTCCCTTGTTGAAAACTTAGTATAAAAGCCATAACTCACCTATATATCGTTCTGGATAGTGACGCACCATTTTGTTAAACCTATTTTGAACTATAGGATAGTGGATCGGATCAATATGGATAGATATGCTACTTGGTCATGTTACCTCTGTTACAAAGGAAATAATTTGAGTATAAAATAGGAGAAAATAATAATGGATGATACAGAGTATGTACAGTGATTCATAGGGATGATATGCGAGTAATGTCACAGTTATTCGTATGGATGATATGCGAGTAATGTGACAGTGATTCATACGGATGATATGTGAGTAATGTGACAGTGATTCATACGGATGATATGTGAGTAATGTGACGGTGATTCATAGGGATGATATGTGAGTAATGTGACAGTGATTCAAAACTACCTCAGATGGCATCCTGCAAAAGCTGTAAATCAAGCCCATGAACCCCTTTTAAGTGATAGAAAACCTCAAAGTTAATTTGAGGGAATCCTCGTGTTGGTTCTGAAATGGCCATGAATGCATCGATGATATTGTATCTTCCTACCGGATGATATTGACGAAATGTGTTGCAACAAAATTAGGGTAACCTCCTTGGTGGCTTGTGATAACTGATCAGACATTGCCATCATGATCATATATACTCCATAACACAGTTCCAAGGAATGTGGTAATGATGGTCATGCTCATGTATCAGAAGCTTTACCAGTTGAGACTAGAGAGATCACATTTTATAATTCGAACTATCTGATCCTTCTTTTTTTCTGGAGTTTTGAGTATCCTGAATGGCAATTAAGTGGGTATTGTGGTCTAGTGTACTTGCACTAGCAATATTTCTAATCTTTTCAGTAAAGATGGTATATCCGCTTTTGCGTCACTTTGCATGATATTCCTTCCTTCGATTTTGGATATGATATTTTTATTTGTCTTTTGCAGGTGAAAGGAAGCGACATGCAGAAGACCAAACTGCTGGCGCTGCTAATGGTCCTGCCGCTCAAACCAATGGTGGCCCATCTGTAAGTACTTAGTAGTCTTCTGTTCTCTTCACCCTAGAACAACTTGTATTAGGAGAAATGAGTTCAGTAGTTCCAATGGACCATCGGAATTGGTTCTTGTTGTATACTGTTTCGGAGCCTTGGCTTAAAGCTAATTATTACTGTCACAGGCTTCACACTGCAAGACTGGTGCACAGGAAGCAATAGCTCCAAACAATATCTTGTTTGTACAGAACTTGCCCCATGAAACAACAAGTATAATGCTGCAAATGCTCTTCCAGCAGTACCCGGGTTTCAGGGAAGTGCGGATGATTGAAGCGAAGCCAGGGATTGCTTTTGTGGAGTTCGACGACGAGGACGAATCTGCAATAGCAATGCAAGCTCTTCAAGGTTTCAAAGTTACACCACAGAACCCCATGGAAATCACCTATGCTAAGAAATGA

mRNA sequence

TTCCGCCTTCCTCGATTTCTCTCTCCTCTTCTTTCTTCACTCAAACTGATTAGGGCATCGCAATTTGCTCCCTTTCCCTCTCATTTCTTCTGCTGCAACTATTTTTCTGCTAGATATTGGTAAACATATTTGACGACAATGATGCTATCTGGCGATATACCTCCTAATCAATCCATTTACGTTAAAAATCTCAATGAGAAGGTTAAGAAAGAAGAATTGAAGAGGTCGCTTTACTGCTTATTCTCTCAGTTTGGGAGGATACTGGATGTCGTGGCTTTGAAGACGTCTAAACTTCGAGGTCAAGCTTGGATTTGCTTTAGTGAAATTACTGCGGCGAGTAATGCTGTTCGGCAAATGCAGAACTTCCCTTTCTATGATAAGCCTATTCGGATACAATACGCAAAAGCCAAGTCAGATTGTATAGCGAAAGCAGAGGGGACTTTTGTTCCTAAGGAAAAGAAGAAGAAACAACAGGAGAAGGGTGAAAGGAAGCGACATGCAGAAGACCAAACTGCTGGCGCTGCTAATGGTCCTGCCGCTCAAACCAATGGTGGCCCATCTGCTTCACACTGCAAGACTGGTGCACAGGAAGCAATAGCTCCAAACAATATCTTGTTTGTACAGAACTTGCCCCATGAAACAACAAGTATAATGCTGCAAATGCTCTTCCAGCAGTACCCGGGTTTCAGGGAAGTGCGGATGATTGAAGCGAAGCCAGGGATTGCTTTTGTGGAGTTCGACGACGAGGACGAATCTGCAATAGCAATGCAAGCTCTTCAAGGTTTCAAAGTTACACCACAGAACCCCATGGAAATCACCTATGCTAAGAAATGA

Coding sequence (CDS)

ATGATGCTATCTGGCGATATACCTCCTAATCAATCCATTTACGTTAAAAATCTCAATGAGAAGGTTAAGAAAGAAGAATTGAAGAGGTCGCTTTACTGCTTATTCTCTCAGTTTGGGAGGATACTGGATGTCGTGGCTTTGAAGACGTCTAAACTTCGAGGTCAAGCTTGGATTTGCTTTAGTGAAATTACTGCGGCGAGTAATGCTGTTCGGCAAATGCAGAACTTCCCTTTCTATGATAAGCCTATTCGGATACAATACGCAAAAGCCAAGTCAGATTGTATAGCGAAAGCAGAGGGGACTTTTGTTCCTAAGGAAAAGAAGAAGAAACAACAGGAGAAGGGTGAAAGGAAGCGACATGCAGAAGACCAAACTGCTGGCGCTGCTAATGGTCCTGCCGCTCAAACCAATGGTGGCCCATCTGCTTCACACTGCAAGACTGGTGCACAGGAAGCAATAGCTCCAAACAATATCTTGTTTGTACAGAACTTGCCCCATGAAACAACAAGTATAATGCTGCAAATGCTCTTCCAGCAGTACCCGGGTTTCAGGGAAGTGCGGATGATTGAAGCGAAGCCAGGGATTGCTTTTGTGGAGTTCGACGACGAGGACGAATCTGCAATAGCAATGCAAGCTCTTCAAGGTTTCAAAGTTACACCACAGAACCCCATGGAAATCACCTATGCTAAGAAATGA

Protein sequence

MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFSEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHAEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06380.1Spo06380.1mRNA


Homology
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BLAST of Spo06380.1 vs. NCBI nr
Match: gi|902219297|gb|KNA18269.1| (hypothetical protein SOVF_072430 [Spinacia oleracea])

HSP 1 Score: 454.1 bits (1167), Expect = 1.400e-124
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 

		  

Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120

Query: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180
           AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY
Sbjct: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 231
[Close]
BLAST of Spo06380.1 vs. NCBI nr
Match: gi|731349344|ref|XP_010685946.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 403.3 bits (1035), Expect = 2.900e-109
Identity = 208/234 (88.89%), Postives = 220/234 (94.02%), Query Frame = 1 

		  

Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIY+KNLNEKVKKEELKRSLYCLFSQFGRILDVVALKT KLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGT+VPKEKKKKQ+EK +RKR 
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTYVPKEKKKKQEEKADRKRR 120

Query: 121 AED--QTAGAANGPAAQTNGGPSASHCKTGAQEAIA-PNNILFVQNLPHETTSIMLQMLF 180
           A+D  QT  AANG  +QTNGGPSA+H +TGAQEA A PN+ILFV+NLPHETTSIMLQMLF
Sbjct: 121 ADDAHQTGAAANGTGSQTNGGPSAAHRRTGAQEAAASPNSILFVENLPHETTSIMLQMLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QQYPGFREVRMIEAKPGIAFVEFD+ED + IAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFDNEDVATIAMQALQGFKVTPQNPMEITYAKK 234
[Close]
BLAST of Spo06380.1 vs. NCBI nr
Match: gi|720003433|ref|XP_010256991.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' [Nelumbo nucifera])

HSP 1 Score: 368.2 bits (944), Expect = 1.000e-98
Identity = 191/235 (81.28%), Postives = 211/235 (89.79%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ+IY+KNLNEKVKKEELKRSLY LFSQ+GRILDVVALKTSKLRGQAW+ FS
Sbjct: 1   MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTSKLRGQAWVAFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK KSDC+AKA+GT++P+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCVAKADGTYIPREKKKKQEEKAERKRKA 120

Query: 122 E--DQTAGAANGPAAQTNGGPSA--SHCKTGAQE-AIAPNNILFVQNLPHETTSIMLQML 181
           E  +  A AANG A  +NGGP+A     K GAQE A APNNILF+QNLPHETTS+MLQML
Sbjct: 121 EAPNSAAAAANGRADHSNGGPAAPFQQGKPGAQEAAAAPNNILFIQNLPHETTSMMLQML 180

Query: 182 FQQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           FQQYPGFREVRMIEAKPGIAFVEF DE +S+IAMQALQGFK+TPQNPM ITYAKK
Sbjct: 181 FQQYPGFREVRMIEAKPGIAFVEFGDEVQSSIAMQALQGFKITPQNPMVITYAKK 235
[Close]
BLAST of Spo06380.1 vs. NCBI nr
Match: gi|568827584|ref|XP_006468132.1| (PREDICTED: U2 small nuclear ribonucleoprotein B'' 2 [Citrus sinensis])

HSP 1 Score: 361.7 bits (927), Expect = 9.600e-97
Identity = 178/231 (77.06%), Postives = 207/231 (89.61%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           M++GDIPPNQ+IY+KNLNEK+KKEELKRSLYCLFSQ+GRI DVVALKT KLRGQAW+ FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSDC+AK +G+FVP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 181
           E+ Q +  ANG  AQ+NGG +AS      QE  APNNILF+QNLPHETTS ML+MLFQQY
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180

Query: 182 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGF+EVRMIEAKPGIAFVEF+D+ +S++AMQALQGFK+TPQNPM IT+AKK
Sbjct: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
[Close]
BLAST of Spo06380.1 vs. NCBI nr
Match: gi|359806644|ref|NP_001241278.1| (uncharacterized protein LOC100805822 [Glycine max])

HSP 1 Score: 361.3 bits (926), Expect = 1.300e-96
Identity = 179/232 (77.16%), Postives = 210/232 (90.52%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ+IY+KN+NEKVKK+ELKRSLYCLFSQ+GRILDV+ALKT KLRGQAW+CFS
Sbjct: 1   MLSGDIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK KSDCIAK EGT+VP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCK-TGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQ 181
           E+ Q +G ANG  + +NGGP+AS  +  GAQE  APNNILF++NLPHETT  ML+MLF+Q
Sbjct: 121 EEAQQSGVANGTHSASNGGPTASFRQGPGAQETAAPNNILFIENLPHETTGRMLEMLFEQ 180

Query: 182 YPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           YPGF+EVR+IEAKPGIAFV+F+DE +S++AMQAL GFK+TPQNPM IT+AKK
Sbjct: 181 YPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
[Close]
BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RH34_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_072430 PE=4 SV=1)

HSP 1 Score: 454.1 bits (1167), Expect = 9.900e-125
Identity = 231/231 (100.00%), Postives = 231/231 (100.00%), Query Frame = 1 

		  

Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120

Query: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180
           AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY
Sbjct: 121 AEDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 180

Query: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 231
[Close]
BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BV14_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g175520 PE=4 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 2.000e-109
Identity = 208/234 (88.89%), Postives = 220/234 (94.02%), Query Frame = 1 

		  

Query: 1   MMLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICF 60
           MMLSGDIPPNQSIY+KNLNEKVKKEELKRSLYCLFSQFGRILDVVALKT KLRGQAWICF
Sbjct: 1   MMLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWICF 60

Query: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRH 120
           SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGT+VPKEKKKKQ+EK +RKR 
Sbjct: 61  SEITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTYVPKEKKKKQEEKADRKRR 120

Query: 121 AED--QTAGAANGPAAQTNGGPSASHCKTGAQEAIA-PNNILFVQNLPHETTSIMLQMLF 180
           A+D  QT  AANG  +QTNGGPSA+H +TGAQEA A PN+ILFV+NLPHETTSIMLQMLF
Sbjct: 121 ADDAHQTGAAANGTGSQTNGGPSAAHRRTGAQEAAASPNSILFVENLPHETTSIMLQMLF 180

Query: 181 QQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QQYPGFREVRMIEAKPGIAFVEFD+ED + IAMQALQGFKVTPQNPMEITYAKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFDNEDVATIAMQALQGFKVTPQNPMEITYAKK 234
[Close]
BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: A0A067DUK7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g026902mg PE=4 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 6.700e-97
Identity = 178/231 (77.06%), Postives = 207/231 (89.61%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           M++GDIPPNQ+IY+KNLNEK+KKEELKRSLYCLFSQ+GRI DVVALKT KLRGQAW+ FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSDC+AK +G+FVP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 181
           E+ Q +  ANG  AQ+NGG +AS      QE  APNNILF+QNLPHETTS ML+MLFQQY
Sbjct: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180

Query: 182 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGF+EVRMIEAKPGIAFVEF+D+ +S++AMQALQGFK+TPQNPM IT+AKK
Sbjct: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
[Close]
BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: V4T1I4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002361mg PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 8.700e-97
Identity = 179/231 (77.49%), Postives = 207/231 (89.61%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           M++GDIPPNQ+IY+KNLNEK+KKEELKRSLYCLFSQ+GRI DVVALKT KLRGQAW+ FS
Sbjct: 1   MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSDCIAK +G+FVP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKEDGSFVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQY 181
           E+ Q +  ANG  AQ+N G +AS      QEA APNNILF+QNLPHETTS ML+MLFQQY
Sbjct: 121 EEAQQSSMANGTGAQSNSGTAASFRNANTQEAAAPNNILFIQNLPHETTSSMLEMLFQQY 180

Query: 182 PGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           PGF+EVRMIEAKPGIAFVEF+D+ +S++AMQALQGFK+TPQNPM IT+AKK
Sbjct: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
[Close]
BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Match: C6TN69_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_14G200400 PE=2 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 8.700e-97
Identity = 179/232 (77.16%), Postives = 210/232 (90.52%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ+IY+KN+NEKVKK+ELKRSLYCLFSQ+GRILDV+ALKT KLRGQAW+CFS
Sbjct: 1   MLSGDIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK KSDCIAK EGT+VP+EKKKKQ+EK ERKR A
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRA 120

Query: 122 ED-QTAGAANGPAAQTNGGPSASHCK-TGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQ 181
           E+ Q +G ANG  + +NGGP+AS  +  GAQE  APNNILF++NLPHETT  ML+MLF+Q
Sbjct: 121 EEAQQSGVANGTHSASNGGPTASFRQGPGAQETAAPNNILFIENLPHETTGRMLEMLFEQ 180

Query: 182 YPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           YPGF+EVR+IEAKPGIAFV+F+DE +S++AMQAL GFK+TPQNPM IT+AKK
Sbjct: 181 YPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
[Close]
BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1)

HSP 1 Score: 339.3 bits (869), Expect = 3.200e-92
Identity = 168/233 (72.10%), Postives = 202/233 (86.70%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY++NLNE++KKEELKRSLYCLFSQFGRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAA +AVRQMQNFPFYDKP+R+QYAKAKSDC+AKAEGTFVPK+KK+KQ+EK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE- 120

Query: 122 EDQTAGAANGPAA---QTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           + Q    ANGP+A     N G  A   +   QE + PNNILF+QNLPHETTS+MLQ+LF+
Sbjct: 121 DSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGF+E+RMI+AKPGIAFVE++D+ +++IAMQ LQGFK+TPQNPM I++AKK
Sbjct: 181 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
[Close]
BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 2.800e-88
Identity = 162/230 (70.43%), Postives = 197/230 (85.65%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY+K++NEK+KKEELKRSLYCLFSQFGR+LDVVALKT KLRGQAW+ F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSD + KAEG+FVPKEKK KQ+EK ERKRHA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 122 EDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQYP 181
           E+    +    A   NG P      +G Q+ + PNNILF+ NLP ET S+MLQ+LF+QYP
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQYP 180

Query: 182 GFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           GF+E+RMIEAKPGIAFVE++D+ +S++AMQALQGFK+TPQNPM +++AKK
Sbjct: 181 GFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
[Close]
BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B_ORYSI (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. indica GN=OsI_11177 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 1.500e-81
Identity = 161/233 (69.10%), Postives = 190/233 (81.55%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ++Y++NLNEKVKKEELKRSLY L SQ+GRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEK-GERKRH 121
           EITAA+NA R +Q F FY K +R+QYAK KSDC+A  +G+  PKEK+KKQ+EK  E+KR 
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 122 AEDQTAGAANGPAAQTNG-GPSASHC-KTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           AE+      N  AAQ+NG G  AS   KT  +    PNNILF+QNLP ETTS+MLQ+LFQ
Sbjct: 121 AEEAQQSGPNA-AAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGFREVRMIEAKPGIAFVE++D+ +S +AMQALQGFK+TP NPM I+YAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
[Close]
BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU2B_ORYSJ (U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp. japonica GN=Os03g0298800 PE=2 SV=1)

HSP 1 Score: 302.8 bits (774), Expect = 3.300e-81
Identity = 160/233 (68.67%), Postives = 190/233 (81.55%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           MLSGDIPPNQ++Y++NLNEKVKKEELKRSLY L SQ+GRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEK-GERKRH 121
           EITAA+NA R +Q F FY K +R+QYAK +SDC+A  +G+  PKEK+KKQ+EK  E+KR 
Sbjct: 61  EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120

Query: 122 AEDQTAGAANGPAAQTNG-GPSASHC-KTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           AE+      N  AAQ+NG G  AS   KT  +    PNNILF+QNLP ETTS+MLQ+LFQ
Sbjct: 121 AEEAQQSGPNA-AAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGFREVRMIEAKPGIAFVE++D+ +S +AMQALQGFK+TP NPM I+YAKK
Sbjct: 181 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
[Close]
BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Match: RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 1.000e-66
Identity = 135/234 (57.69%), Postives = 170/234 (72.65%), Query Frame = 1 

		  

Query: 8   PPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFSEITAAS 67
           PPN +IY+ NLNEK+K EELK+SL  +FSQFG+ILDV+A KT K +GQAW+ F ++ +A+
Sbjct: 20  PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79

Query: 68  NAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERK----RHAED 127
            A++ MQ+FPF++KP+RIQYAK KSD IAKA+GTFVP+E++K+  EK E+K    +H + 
Sbjct: 80  EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139

Query: 128 QTAGAANGPAAQTNGGPSASHCK-TGAQ-----EAIAPNNILFVQNLPHETTSIMLQMLF 187
              G          G P  S     GAQ     E I PNNILFVQNLPHETT +MLQMLF
Sbjct: 140 SQVGLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQMLF 199

Query: 188 QQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
            QYPGF+EVRM+EAKPGIAFVE+ DE ++  AM  LQGFK+T  N M I+YAKK
Sbjct: 200 CQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
[Close]
BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 339.3 bits (869), Expect = 1.800e-93
Identity = 168/233 (72.10%), Postives = 202/233 (86.70%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY++NLNE++KKEELKRSLYCLFSQFGRILDVVALKT KLRGQAW+ FS
Sbjct: 1   MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAA +AVRQMQNFPFYDKP+R+QYAKAKSDC+AKAEGTFVPK+KK+KQ+EK ERKR  
Sbjct: 61  EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE- 120

Query: 122 EDQTAGAANGPAA---QTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQ 181
           + Q    ANGP+A     N G  A   +   QE + PNNILF+QNLPHETTS+MLQ+LF+
Sbjct: 121 DSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 180

Query: 182 QYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           QYPGF+E+RMI+AKPGIAFVE++D+ +++IAMQ LQGFK+TPQNPM I++AKK
Sbjct: 181 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
[Close]
BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 326.2 bits (835), Expect = 1.600e-89
Identity = 162/230 (70.43%), Postives = 197/230 (85.65%), Query Frame = 1 

		  

Query: 2   MLSGDIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFS 61
           ML+ DIPPNQSIY+K++NEK+KKEELKRSLYCLFSQFGR+LDVVALKT KLRGQAW+ F+
Sbjct: 1   MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60

Query: 62  EITAASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKRHA 121
           E+TAASNAVRQMQNFPFYDKP+RIQYAK+KSD + KAEG+FVPKEKK KQ+EK ERKRHA
Sbjct: 61  EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120

Query: 122 EDQTAGAANGPAAQTNGGPSASHCKTGAQEAIAPNNILFVQNLPHETTSIMLQMLFQQYP 181
           E+    +    A   NG P      +G Q+ + PNNILF+ NLP ET S+MLQ+LF+QYP
Sbjct: 121 EETQQPSMPNGATTQNGMPVPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQYP 180

Query: 182 GFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           GF+E+RMIEAKPGIAFVE++D+ +S++AMQALQGFK+TPQNPM +++AKK
Sbjct: 181 GFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
[Close]
BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Match: AT2G47580.1 (spliceosomal protein U1A)

HSP 1 Score: 246.9 bits (629), Expect = 1.200e-65
Identity = 138/239 (57.74%), Postives = 169/239 (70.71%), Query Frame = 1 

		  

Query: 6   DIPPNQSIYVKNLNEKVKKEELKRSLYCLFSQFGRILDVVALKTSKLRGQAWICFSEITA 65
           ++ PNQ+IY+ NLNEKVK +ELK+SL  +FSQFG+IL+++A KT K +GQAW+ F    +
Sbjct: 13  EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72

Query: 66  ASNAVRQMQNFPFYDKPIRIQYAKAKSDCIAKAEGTFVPKEKKKKQQEKGERKR-----H 125
           AS A+ +M NFPFYDK +RIQYAK KSD +AKA+GTFVP+EK+K+ +EKG  K+     H
Sbjct: 73  ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132

Query: 126 AEDQTAGAAN-------GPAAQTNGGPSASHCKTGAQEAIA-PNNILFVQNLPHETTSIM 185
              Q     N       G A   +  P     K    EA A PNNILFVQNLPHETT ++
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192

Query: 186 LQMLFQQYPGFREVRMIEAKPGIAFVEFDDEDESAIAMQALQGFKVTPQNPMEITYAKK 232
           LQMLF QY GF+EVRMIEAKPGIAFVEF DE +S +AMQ LQGFK+  QN M ITYAKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKI-QQNQMLITYAKK 250
The following BLAST results are available for this feature:
BLAST of Spo06380.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902219297|gb|KNA18269.1|1.4e-124100.hypothetical protein SOVF_0724... [more]
gi|731349344|ref|XP_010685946.1|2.9e-10988.8PREDICTED: U2 small nuclear ri... [more]
gi|720003433|ref|XP_010256991.1|1.0e-9881.2PREDICTED: U2 small nuclear ri... [more]
gi|568827584|ref|XP_006468132.1|9.6e-9777.0PREDICTED: U2 small nuclear ri... [more]
gi|359806644|ref|NP_001241278.1|1.3e-9677.1uncharacterized protein LOC100... [more]
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BLAST of Spo06380.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RH34_SPIOL9.9e-125100.Uncharacterized protein OS=Spi... [more]
A0A0J8BV14_BETVU2.0e-10988.8Uncharacterized protein OS=Bet... [more]
A0A067DUK7_CITSI6.7e-9777.0Uncharacterized protein OS=Cit... [more]
V4T1I4_9ROSI8.7e-9777.4Uncharacterized protein OS=Cit... [more]
C6TN69_SOYBN8.7e-9777.1Uncharacterized protein OS=Gly... [more]
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BLAST of Spo06380.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RU2B1_ARATH3.2e-9272.1U2 small nuclear ribonucleopro... [more]
RU2B2_ARATH2.8e-8870.4U2 small nuclear ribonucleopro... [more]
RU2B_ORYSI1.5e-8169.1U2 small nuclear ribonucleopro... [more]
RU2B_ORYSJ3.3e-8168.6U2 small nuclear ribonucleopro... [more]
RU1A_ORYSI1.0e-6657.6U1 small nuclear ribonucleopro... [more]
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BLAST of Spo06380.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT2G30260.11.8e-9372.1U2 small nuclear ribonucleopro... [more]
AT1G06960.11.6e-8970.4RNA-binding (RRM/RBD/RNP motif... [more]
AT2G47580.11.2e-6557.7spliceosomal protein U1A[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 13..84
score: 7.0E-9coord: 159..218
score: 6.1
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 12..86
score: 2.5E-12coord: 158..227
score: 3.6
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 11..90
score: 14.266coord: 157..231
score: 14
IPR012677Nucleotide-binding alpha-beta plait domainGENE3D3.30.70.330coord: 8..93
score: 1.6E-23coord: 149..230
score: 5.4
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 154..218
score: 1.97E-27coord: 9..100
score: 1.97
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''PANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 2..231
score: 2.6E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006334 nucleosome assembly
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process GO:0030001 metal ion transport
biological_process GO:0006508 proteolysis
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0007049 cell cycle
biological_process GO:0051301 cell division
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0001510 RNA methylation
biological_process GO:0006108 malate metabolic process
biological_process GO:0006090 pyruvate metabolic process
biological_process GO:0019643 reductive tricarboxylic acid cycle
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006396 RNA processing
biological_process GO:0000186 activation of MAPKK activity
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005622 intracellular
cellular_component GO:0005739 mitochondrion
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0005634 nucleus
cellular_component GO:0000786 nucleosome
cellular_component GO:0005840 ribosome
molecular_function GO:0003924 GTPase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0030060 L-malate dehydrogenase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004709 MAP kinase kinase kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo067110.78Barchart | Table
Spo004440.77Barchart | Table
Spo163780.77Barchart | Table
Spo081980.77Barchart | Table
Spo249360.76Barchart | Table
Spo062770.76Barchart | Table
Spo104500.75Barchart | Table
Spo017440.75Barchart | Table
Spo102110.75Barchart | Table
Spo030080.75Barchart | Table
Spo202350.74Barchart | Table
Spo064970.74Barchart | Table
Spo138770.74Barchart | Table
Spo134870.74Barchart | Table
Spo249370.73Barchart | Table
Spo187840.72Barchart | Table
Spo011280.72Barchart | Table
Spo255070.72Barchart | Table
Spo251000.72Barchart | Table
Spo079690.72Barchart | Table
Spo249160.72Barchart | Table
Spo244160.72Barchart | Table
Spo230920.71Barchart | Table
Spo230670.71Barchart | Table
Spo063410.71Barchart | Table
Spo052500.70Barchart | Table
Spo253460.70Barchart | Table
Spo170390.70Barchart | Table
Spo026090.70Barchart | Table
Spo037140.70Barchart | Table
Spo021050.70Barchart | Table
Spo150920.70Barchart | Table
Spo011830.69Barchart | Table
Spo257790.69Barchart | Table
Spo256610.69Barchart | Table
Spo029930.69Barchart | Table
Spo024700.69Barchart | Table
Spo143780.69Barchart | Table
Spo240640.69Barchart | Table
Spo242130.69Barchart | Table
Spo044090.68Barchart | Table
Spo074480.68Barchart | Table
Spo126990.68Barchart | Table
Spo232980.68Barchart | Table
Spo137890.68Barchart | Table
Spo193940.68Barchart | Table
Spo127350.68Barchart | Table
Spo165300.67Barchart | Table
Spo009080.67Barchart | Table
Spo030060.67Barchart | Table
Spo041140.67Barchart | Table
Spo069290.67Barchart | Table
Spo103000.67Barchart | Table
Spo168940.67Barchart | Table
Spo235990.67Barchart | Table
Spo280410.66Barchart | Table
Spo014780.66Barchart | Table
Spo210770.66Barchart | Table
Spo182200.66Barchart | Table
Spo181430.66Barchart | Table
Spo120840.66Barchart | Table
Spo098550.66Barchart | Table
Spo079160.66Barchart | Table
Spo051840.66Barchart | Table
Spo030070.66Barchart | Table
Spo206940.65Barchart | Table
Spo065080.65Barchart | Table