Spo06443 (gene)

Overview
NameSpo06443
Typegene
OrganismSpinacia oleracea (Spinach)
Description40S ribosomal protein S6
LocationSpoScf_01045 : 84864 .. 87215 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGTTCGTTCATCTTAAAAATTTATGGGATTTTTCACTGATTGTGTGAATTCGTTGTATGTGAATTAAGATTCGACGGACATTTTCTGGTTTTGTCGATTTTAAATCTTAGATTTTGTTGGGTGTTTGCAGTTCAATATCGCCAACCCTACTACAGGGTGCCAGAAGAAGCTCGAGATCGACGACGACCAGAAACTGTGAGTTTTCTTCATAAATTTTCTGTAGTTTTATAATTATTTAAATCAGGGAGTTTGAATGTATTGTATTTATACTTGTTTTTGGGATTGTATTTGGTTTGGATGTGCCCATTTTTCCGATTTTGCTTCCTGGTTACATTGATTGCTAAAACACTATTAGCCCCTGTTAATCCTGTAAATCATGTGTAGCTATTCTTAATTAGAGTATTTTCTTTGTTTTATAGACGTGGATTCCTTTTTTAATTTCGGCATTCTGGATGTGGGGATTCTTTCGTGTGGAGTTTATTTAAGAACTTCGGTTGGGGCTAATTGTGTATTCATTATGGTGTTGAACCATCTTTAAGGTAGTTTAGATAAAAGACTTGTCTTTTGAGACTGTAAATAATAGATATTTCATTAATCATAAAATCTATATGATTGTCTGTTCCTTGATAGTTTAAGGCAATCGTTAGCGTTGCTGGGGCTCTTTGCTCTTGGAGCAGATGGTGCTTTCAGCCCTTTGCGTTGCCCATATTTTTTGAGCCAACCAATGCTTGCATTACTGCCTTTGAATTTAATGTCTGCGTGCACTCAGGTTCTCAGATATATCACATTTAATTATTTGCTTGGCAGTTTACTCATTATTTTTTATTGTTATCTGTGGATGTTCTTTGAATCCTTGCCATATCTTGTTTCGTTTTATAAAACGGTTACCTTCGTTTACTTGGGTAACTGAAATGTGCGGGGTTTCTTTGAACTTCGGTTGGGGATTGTGTCTTCGGTGAACTGATTTTAGGAAGTTTAGATGGGAGACTTGCCTAGTAAGACCTTACATAATAGGTATTTCATCAGTCATCATCACATTGATGAGTTAAATGGATATGTGTTTGATTGCATAGAACTAAATTAGACTATTACTTTTATCCACTCTATTTGTTTGTCTGAGCTTATAAACCTTTGGTGTCGAACAGTCGAGCTTTCTATGACAAGAGGATCTCCCAGGAAGTCAATGGAGATGCTCTCGGAGAGGTGTGAATAATTTTGTTACTCCGTATAATGCATTTCTTAAAGGAATGACTAGAAGATAATATTTAATTAAAATCTAATGATGCAGGAATTCAAAGGATACGTTTTCAAAATTATGGGAGGATGTGACAAGCAAGGTTTCCCCATGAAACAGGGTGTGCTTACTCCTGGAAGAGTTCGCCTATTGCTCCACAGAGGTTTGTAACTTGTAACCTTTACTTTGTTGTTTCTTTGTATTTACTCTTATCTTTTTGTCCTCTAGTATAGTATATTGGATAGTTCACACACATGCATGCAAGTAATCGCAGTACACTGTTTGTATATCTCTTTTACTTTCTATGGATGTAAACGAGCTTCAGCTTGTTAAATCTGGTCTATGCTATGGAAATTGTATTCATTATGCTTTGGTGAAGCTTCTCAGATCGTCGGGCTACAATGCTGCAGTATGTGCTTCAAAATGGCAAGGTTGTAACAAGGTGCCTGGAGGTATAATCGCTTCCTGAAAATCTCATTCAATAACATTTTTTTGCATATTCTAAATTCTCGGGTTTATCCAATTCTCATACTTCCTCAAAACAAAAATAACTTAACCAGATATAAATTATGGCCCGTTGATGAGTTTTTTAGTTAAATGATCTAAAGGAAAAAGAAGTCCGCCTATGAGCTTAGCTCAATTAATAAACGAGCTGAACTTGAACATATTGATTCTTAAATGAATCAAGTTTAAAAAACTGTTTGAGCTCGTCTGGAAACTCAAGTTTGATTCGACTATGTTAAACAAGGTTGAACATGGGAAAAGTGATACACAAATCAGACCATTTACAAATGCACACACCTTCTACCAAGGAACAAAGTTTTTTTTTGGAAGATTCTTTAAAGTTGAGAGTTGTACAGGCCAAGTATACATATTCTTCTTAAAGTGCGCGTTAGAGTTTTGTTGGGGGGCTGGGGTGGTGGGAGCATGATGATTTCTAAGGATGAATAATTATACGAACATGGTATTACAAGCAGTTGTTGGTCCATTGCCTCTTGAGCAATTTCTAATTGGGAGTTCAATTGTTTACAGGTGCATCCAGAGAAGTACCTGGATAGTCTTCAAAGCAGCTCGACTGTTGCTCAAATTGTGGAGGTATATCAGAAATCGTAG

mRNA sequence

ATGAAGTTCAATATCGCCAACCCTACTACAGGGTGCCAGAAGAAGCTCGAGATCGACGACGACCAGAAACTTCGAGCTTTCTATGACAAGAGGATCTCCCAGGAAGTCAATGGAGATGCTCTCGGAGAGGAATTCAAAGGATACGTTTTCAAAATTATGGGAGGATGTGACAAGCAAGGTTTCCCCATGAAACAGGGTGTGCTTACTCCTGGAAGAGTTCGCCTATTGCTCCACAGAGATCGTCGGGCTACAATGCTGCAGTATGTGCTTCAAAATGGCAAGGTTGTAACAAGGTGCCTGGAGGTGCATCCAGAGAAGTACCTGGATAGTCTTCAAAGCAGCTCGACTGTTGCTCAAATTGTGGAGGTATATCAGAAATCGTAG

Coding sequence (CDS)

ATGAAGTTCAATATCGCCAACCCTACTACAGGGTGCCAGAAGAAGCTCGAGATCGACGACGACCAGAAACTTCGAGCTTTCTATGACAAGAGGATCTCCCAGGAAGTCAATGGAGATGCTCTCGGAGAGGAATTCAAAGGATACGTTTTCAAAATTATGGGAGGATGTGACAAGCAAGGTTTCCCCATGAAACAGGGTGTGCTTACTCCTGGAAGAGTTCGCCTATTGCTCCACAGAGATCGTCGGGCTACAATGCTGCAGTATGTGCTTCAAAATGGCAAGGTTGTAACAAGGTGCCTGGAGGTGCATCCAGAGAAGTACCTGGATAGTCTTCAAAGCAGCTCGACTGTTGCTCAAATTGTGGAGGTATATCAGAAATCGTAG

Protein sequence

MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQGFPMKQGVLTPGRVRLLLHRDRRATMLQYVLQNGKVVTRCLEVHPEKYLDSLQSSSTVAQIVEVYQKS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06443.1Spo06443.1mRNA


Homology
[Close]
BLAST of Spo06443.1 vs. NCBI nr
Match: gi|902198017|gb|KNA13581.1| (hypothetical protein SOVF_115380 [Spinacia oleracea])

HSP 1 Score: 168.3 bits (425), Expect = 8.600e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. NCBI nr
Match: gi|116786688|gb|ABK24202.1| (unknown [Picea sitchensis])

HSP 1 Score: 167.5 bits (423), Expect = 1.500e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAFYDKR+SQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRLSQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. NCBI nr
Match: gi|568823724|ref|XP_006466259.1| (PREDICTED: 40S ribosomal protein S6 [Citrus sinensis])

HSP 1 Score: 166.8 bits (421), Expect = 2.500e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. NCBI nr
Match: gi|567867439|ref|XP_006426342.1| (hypothetical protein CICLE_v10026340mg [Citrus clementina])

HSP 1 Score: 166.8 bits (421), Expect = 2.500e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. NCBI nr
Match: gi|20139942|sp|Q9M3V8.1|RS6_ASPOF (RecName: Full=40S ribosomal protein S6 [Asparagus officinalis])

HSP 1 Score: 166.4 bits (420), Expect = 3.300e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEV+GDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R237_SPIOL (40S ribosomal protein S6 OS=Spinacia oleracea GN=SOVF_115380 PE=3 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 6.000e-39
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. UniProtKB/TrEMBL
Match: A9NU91_PICSI (40S ribosomal protein S6 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.000e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAFYDKR+SQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRLSQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. UniProtKB/TrEMBL
Match: A0A067F065_CITSI (40S ribosomal protein S6 OS=Citrus sinensis GN=CISIN_1g025698mg PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.700e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. UniProtKB/TrEMBL
Match: V4SG60_9ROSI (40S ribosomal protein S6 OS=Citrus clementina GN=CICLE_v10026340mg PE=3 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.700e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAF+DKRISQEVNGDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFFDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. UniProtKB/TrEMBL
Match: U5CNL2_AMBTC (40S ribosomal protein S6 OS=Amborella trichopoda GN=AMTR_s00038p00238890 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.300e-38
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEV+GDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. ExPASy Swiss-Prot
Match: RS6_ASPOF (40S ribosomal protein S6 OS=Asparagus officinalis GN=rps6 PE=2 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 2.000e-40
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEV+GDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. ExPASy Swiss-Prot
Match: RS61_ARATH (40S ribosomal protein S6-1 OS=Arabidopsis thaliana GN=RPS6A PE=1 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 1.300e-39
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFN+ANPTTGCQKKLEIDDDQKLRAFYDKRISQEV+GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1  MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. ExPASy Swiss-Prot
Match: RS62_ARATH (40S ribosomal protein S6-2 OS=Arabidopsis thaliana GN=RPS6B PE=1 SV=3)

HSP 1 Score: 163.7 bits (413), Expect = 1.300e-39
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKR+SQEV+GDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. ExPASy Swiss-Prot
Match: RS6_RAT (40S ribosomal protein S6 OS=Rattus norvegicus GN=Rps6 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.900e-26
Identity = 55/79 (69.62%), Postives = 66/79 (83.54%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MK NI+ P TGCQK +E+DD++KLR FY+KR++ EV  DALGEE+KGYV +I GG DKQG
Sbjct: 1  MKLNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLT GRVRLLL +
Sbjct: 61 FPMKQGVLTHGRVRLLLSK 79
[Close]
BLAST of Spo06443.1 vs. ExPASy Swiss-Prot
Match: RS6_ASHGO (40S ribosomal protein S6 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPS6 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.900e-26
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MK NI+ P  G QK +E+DD+ ++R FYDKRI QEVNG+A+G+EFKGYVFKI GG DKQG
Sbjct: 1  MKLNISYPVNGTQKTIEVDDEHRVRVFYDKRIGQEVNGEAVGDEFKGYVFKIAGGNDKQG 60

Query: 61 FPMKQGVLTPGRVRLLL 78
          FPMKQGVL P RV+LL+
Sbjct: 61 FPMKQGVLLPTRVKLLM 77
[Close]
BLAST of Spo06443.1 vs. TAIR (Arabidopsis)
Match: AT4G31700.1 (ribosomal protein S6)

HSP 1 Score: 163.7 bits (413), Expect = 7.400e-41
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFN+ANPTTGCQKKLEIDDDQKLRAFYDKRISQEV+GDALGEEFKGYVFKI GGCDKQG
Sbjct: 1  MKFNVANPTTGCQKKLEIDDDQKLRAFYDKRISQEVSGDALGEEFKGYVFKIKGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
[Close]
BLAST of Spo06443.1 vs. TAIR (Arabidopsis)
Match: AT5G10360.1 (Ribosomal protein S6e)

HSP 1 Score: 163.7 bits (413), Expect = 7.400e-41
Identity = 75/79 (94.94%), Postives = 79/79 (100.00%), Query Frame = 1 

		  

Query: 1  MKFNIANPTTGCQKKLEIDDDQKLRAFYDKRISQEVNGDALGEEFKGYVFKIMGGCDKQG 60
          MKFN+ANPTTGCQKKLEIDDDQKLRAF+DKR+SQEV+GDALGEEFKGYVFKIMGGCDKQG
Sbjct: 1  MKFNVANPTTGCQKKLEIDDDQKLRAFFDKRLSQEVSGDALGEEFKGYVFKIMGGCDKQG 60

Query: 61 FPMKQGVLTPGRVRLLLHR 80
          FPMKQGVLTPGRVRLLLHR
Sbjct: 61 FPMKQGVLTPGRVRLLLHR 79
The following BLAST results are available for this feature:
BLAST of Spo06443.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902198017|gb|KNA13581.1|8.6e-39100.hypothetical protein SOVF_1153... [more]
gi|116786688|gb|ABK24202.1|1.5e-3898.7unknown [Picea sitchensis][more]
gi|568823724|ref|XP_006466259.1|2.5e-3898.7PREDICTED: 40S ribosomal prote... [more]
gi|567867439|ref|XP_006426342.1|2.5e-3898.7hypothetical protein CICLE_v10... [more]
gi|20139942|sp|Q9M3V8.1|RS6_ASPOF3.3e-3898.7RecName: Full=40S ribosomal pr... [more]
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BLAST of Spo06443.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R237_SPIOL6.0e-39100.40S ribosomal protein S6 OS=Sp... [more]
A9NU91_PICSI1.0e-3898.740S ribosomal protein S6 OS=Pi... [more]
A0A067F065_CITSI1.7e-3898.740S ribosomal protein S6 OS=Ci... [more]
V4SG60_9ROSI1.7e-3898.740S ribosomal protein S6 OS=Ci... [more]
U5CNL2_AMBTC2.3e-3898.740S ribosomal protein S6 OS=Am... [more]
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BLAST of Spo06443.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RS6_ASPOF2.0e-4098.740S ribosomal protein S6 OS=As... [more]
RS61_ARATH1.3e-3996.240S ribosomal protein S6-1 OS=... [more]
RS62_ARATH1.3e-3994.940S ribosomal protein S6-2 OS=... [more]
RS6_RAT4.9e-2669.640S ribosomal protein S6 OS=Ra... [more]
RS6_ASHGO4.9e-2668.840S ribosomal protein S6 OS=As... [more]
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BLAST of Spo06443.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT4G31700.17.4e-4196.2ribosomal protein S6[more]
AT5G10360.17.4e-4194.9Ribosomal protein S6e[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001377Ribosomal protein S6ePANTHERPTHR1150240S RIBOSOMAL PROTEIN S6coord: 2..79
score: 1.9
IPR001377Ribosomal protein S6ePFAMPF01092Ribosomal_S6ecoord: 1..79
score: 7.5
IPR001377Ribosomal protein S6eSMARTSM01405Ribosomal_S6e_2coord: 1..113
score: 1.0
IPR018282Ribosomal protein S6e, conserved sitePROSITEPS00578RIBOSOMAL_S6Ecoord: 52..63
scor
NoneNo IPR availablePANTHERPTHR11502:SF10SUBFAMILY NOT NAMEDcoord: 2..79
score: 1.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo255230.67Barchart | Table