Spo06505 (gene)

Overview
NameSpo06505
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 96316864 .. 96318375 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGTCGTTGTTCGATCCTTTCTTGAGTCTTGCTTCCGATTGGAGGCGGTTGATTACAACTTACGAGGTTGGCTATCATGTCAATGTATAAAGAGGCGACACATGGCGTAATGGAATGGCTTGCCTTTGAGATTTGTATAAATAAATATCATACTTTAATGAATACTTCCCTTACAATACAAAGTAAAAAATGTGCCTAAAAGTAAGTTAAAGTAAAAAAAAAGCCTAAAAGTAAGTTAAGGTAATACGGAGTAATAACTTTTATTTTAATAATTGAATGGGTCTGAATCTACGTGGTGGATTAGGACCGATTATGGGTCAAAGAATATTGGCCCCAGACTCATTTTTAAGCATGTAGACCTAGATCTACTCCAGATTCAATGAGTCTCAAATAAAACTGGACCTTAAAAGATGGTGCGGGTCCATCAGAATTTGGTTCGAGTCTTGAACCAATGGCTATCCTTAACATCCAAATTCTCATAAAGGGTTTCCAATCCGATAATCATATCCTTAACTTTCAAAGATATATGATATCCACCGACCACCGCACCCAACATCCAAATTCTCATAAAGGGTTCCCAATCCGATAATCATATAAGTTCAGGCATTTCCTTTTTCGAATTTGACATCGTATCGAATTTTGAGTTTCCAGTTGGATACTCGGCTTAGCCGGGAGGACATTATAAATTGCAAATGGGGATTGGTCTGAACTCCTCGCCACTAGCAATTGCAATGACTCAAACAAAATAGAAAACACAAATTCTTATTTACAATGGGTGTACAATAAATATTGTACACCTGAGTAAAAGTTAACCCAAAATGCTTAAAAGTTAAGCATATATATGTAAAAGTTATCTACTTTTAAGTGATAAATTTTTTCATTTTAGTAAAACTTATGTCTTCAACCTCACTAATAATGTATAAAATTAATAATTTAACCCTTTAAAATATTTATCTATTAATTTTTTTGCTAATATAAAAGTTAATCAAAACTAAGTTAAAATTACAAAGAAAAAATGGTTAAAGTTATCTTGGTGTACACCTTGTGCGCGCAAGACCTTTTGAATAGAAAAAACAATATCTAAAGAAGTACAGAAAATTAAATAGCCAGTAACACACAGAAAGAGGCAGAGAGGGATAAAAAGAAGGAAGAAGAAAAAATACCCCCAAATCTCTCTCTCTTTCCATTCTACTCGACGACCTTTCAACCTTCTCAATTCTCATAGCATCGCAATTTCCATCATCACAACTGTGTCGGCCCTCCCACGCCATTCCCAAAGCTCCAATTCGCACTCTTCTACTCTAAGGTAAATCGAACTTTTCTCTCTCATCCCCTTTAATCACAAATTCAACATAACTCATCTTTTTTTCGTGAACACTACCCAGATTGGCCAGATCACACTTATTTTACCTCAACTTAAGAAACCCACATCGCTAAATTGAATTAATTTAACCGATTTACCTTGAAATTCCCCTAATGTTGTGTAATTTTTGGTGGCCAGATCTTGA

mRNA sequence

ATGGAGGTCGTTGTTCGATCCTTTCTTGAGTCTTGCTTCCGATTGGAGGCGGTTGATTACAACTTACGAGTAACACACAGAAAGAGGCAGAGAGGGATAAAAAGAAGGAAGAAGAAAAAATACCCCCAAATCTCTCTCTCTTTCCATTCTACTCGACGACCTTTCAACCTTCTCAATTCTCATAGCATCGCAATTTCCATCATCACAACTGTGTCGGCCCTCCCACGCCATTCCCAAAGCTCCAATTCGCACTCTTCTACTCTAAGATCTTGA

Coding sequence (CDS)

ATGGAGGTCGTTGTTCGATCCTTTCTTGAGTCTTGCTTCCGATTGGAGGCGGTTGATTACAACTTACGAGTAACACACAGAAAGAGGCAGAGAGGGATAAAAAGAAGGAAGAAGAAAAAATACCCCCAAATCTCTCTCTCTTTCCATTCTACTCGACGACCTTTCAACCTTCTCAATTCTCATAGCATCGCAATTTCCATCATCACAACTGTGTCGGCCCTCCCACGCCATTCCCAAAGCTCCAATTCGCACTCTTCTACTCTAAGATCTTGA

Protein sequence

MEVVVRSFLESCFRLEAVDYNLRVTHRKRQRGIKRRKKKKYPQISLSFHSTRRPFNLLNSHSIAISIITTVSALPRHSQSSNSHSSTLRS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06505.1Spo06505.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo06505.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06505.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06505.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06505.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0009733 response to auxin
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0009972 cytidine deamination
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0007033 vacuole organization
biological_process GO:0090503 RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0007030 Golgi organization
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0006606 protein import into nucleus
biological_process GO:0080005 photosystem stoichiometry adjustment
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006570 tyrosine metabolic process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0009737 response to abscisic acid
biological_process GO:0043407 negative regulation of MAP kinase activity
biological_process GO:0009755 hormone-mediated signaling pathway
biological_process GO:0009790 embryo development
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0046520 sphingoid biosynthetic process
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0042761 very long-chain fatty acid biosynthetic process
biological_process GO:0035335 peptidyl-tyrosine dephosphorylation
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0009579 thylakoid
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0009570 chloroplast stroma
molecular_function GO:0018454 acetoacetyl-CoA reductase activity
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0045703 ketoreductase activity
molecular_function GO:0008138 protein tyrosine/serine/threonine phosphatase activity
molecular_function GO:0004535 poly(A)-specific ribonuclease activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004725 protein tyrosine phosphatase activity
molecular_function GO:0004126 cytidine deaminase activity
molecular_function GO:0008270 zinc ion binding
RNA-Seq Expression