Spo06582 (gene)

Overview
NameSpo06582
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionCox19 family protein (CHCH motif)
LocationSpoScf_01143 : 109422 .. 111231 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCTTTATGGCACGGAGGGTCGTCAAAAAAAAAATTTGGCACGGGGGAAGAGAGAGAAAAAGGAACTCGAAGTAATGGCGTCCAAAGTCGAATCACCTCCATACCCAAGTGCAGCTAGAATATCCGATTCTTCATGCTATCCTCAATACACCGCGTCTCTCAAGTGTAAGATTTCCTTACTTTTTACTCATAATTTCCACCAATTTATTGCAACATCTTTTGCGAAATTCAGATCCCTAGTTCGTCCTAAATTGGGCATTTTTTCCACTTTAAGGGCATTTCCCCGTTCAAGTTTCCCTTTTCAATTCAATAATATTTGTGTATTCAGCTCAAGCATTTAAAGGAACCTAAAAAGTAAAAATGGTGATACGATGAATTTTCCCTGTTTTGTATACCTTGATTTTGATCAATGTATTTGAAACCCATGATTAAAATCACAGTAGTTTTTTTGGTAAAAACTGTTAATTCAATTTCTGTGATTAGATTGAGTTGTTGAGTTTTTCTTCCTAATGATATGCATAGGTTTAGAGCAATACAACTCAGAAAAGAGCAAATGTCAAGAGTTCTTTGATGTTTACAAGGAATGCAAAAAGAAGGAGGTAAGCAATAAAGTGCCCATAATTTTAGTTTTAGGCTTTCTAATTATGTGTGATTTGGTGGATTTATTTCTTCATTTTTTGTACTAAAAGGGGTAATGATAATGAAATCATATGTAATGCCCAAGAATAAGGTTAAGTATCATATGTAATGTACATAGACCAATTGGTGAAAAATGCACATTTAGTTGTTGCTTCTTTTGTTTTCTTCATTGAATTGAAGGTGATTTTTGGTGAACCTGCAATTAAGATTTAAGATTGAGACCCGATTGTGGCAGGAAATGGTTAAATTATTGCTAGGCTGCTTAGAAGCTCAAAGTATTTTCTTGAGGTGTCAATGTGTCATACATATTGGGATGTTTGGAGCCTTTTTGTGTTTTAATTACTTTTGTAGAATAGGGAAACCTTGTTTATGTTCCAGTTCTCCACAAGTAAACAAGATCAAGGATGCATTCCATTATTCAGTTATCCTTAAGCTAACGTAGACGAACCATCTGTTGTGGCCATGTGACCTTGTTCGTATCACTAAACTTAACCCAAGTAGCCGCATTAACTCATTGCTTCATCTGGCAAAGTCTATTTGAATGTGGATGAAGAAAACATGTAAATTAGAGATACCAAAATGGATTTCTTTTGTTATTGTTTGTATTGGATCGGGTGGTCACGTTTTGTTCAATCATTGTTCACTGTTCATTGTGCATGGTGTGGCATAATCCAAGCTTATAACATGCCCTCTTCTTTGTAGAGGGAAGCACGACTGGAACGCAACCGACATCGCTCTCTCTTTTCATAGACCCCCTCAGGGCAGGGTGTTTTAAAAAGGTTTTGCTTTGATAAAAGGAGATAGATTTGTTGCTAAAGTGCGCTTTGGTTCTGAAATAATTCGAGTATTACATTAGCAATGGACTAGCATTATCGTGTGTTGAATTTATTGTATATTTATGTACTCACTTACAGACTTACAGTTCACTCCCATAGACAAGGATGTTTTTGCTCTGTATTTTGAGCAATCTTAATAATATTAAGACCGTACGGAATTTAAGAAGAGGAACATATATGGTAGAATAGGAATCTTCCTTCCATATGTCAGCACTTTTTATTATTTCATTCACTGTCGTGGTGATTGTTTTGCTGAAACATAGACATCCTGTTCTAATGAAGTAAGAAATTGGCTGATAGCTGTATAAAAACATGCAGATGCACTTATCAAATAA

mRNA sequence

TGCTTTATGGCACGGAGGGTCGTCAAAAAAAAAATTTGGCACGGGGGAAGAGAGAGAAAAAGGAACTCGAAGTAATGGCGTCCAAAGTCGAATCACCTCCATACCCAAGTGCAGCTAGAATATCCGATTCTTCATGCTATCCTCAATACACCGCGTCTCTCAAGTGTTTAGAGCAATACAACTCAGAAAAGAGCAAATGTCAAGAGTTCTTTGATGTTTACAAGGAATGCAAAAAGAAGGAGAGGGAAGCACGACTGGAACGCAACCGACATCGCTCTCTCTTTTCATAGACCCCCTCAGGGCAGGGTGTTTTAAAAAGGTTTTGCTTTGATAAAAGGAGATAGATTTGTTGCTAAAGTGCGCTTTGGTTCTGAAATAATTCGAGTATTACATTAGCAATGGACTAGCATTATCGTGTGTTGAATTTATTGTATATTTATGTACTCACTTACAGACTTACAGTTCACTCCCATAGACAAGGATGTTTTTGCTCTGTATTTTGAGCAATCTTAATAATATTAAGACCGTACGGAATTTAAGAAGAGGAACATATATGGTAGAATAGGAATCTTCCTTCCATATGTCAGCACTTTTTATTATTTCATTCACTGTCGTGGTGATTGTTTTGCTGAAACATAGACATCCTGTTCTAATGAAGTAAGAAATTGGCTGATAGCTGTATAAAAACATGCAGATGCACTTATCAAATAA

Coding sequence (CDS)

ATGGCGTCCAAAGTCGAATCACCTCCATACCCAAGTGCAGCTAGAATATCCGATTCTTCATGCTATCCTCAATACACCGCGTCTCTCAAGTGTTTAGAGCAATACAACTCAGAAAAGAGCAAATGTCAAGAGTTCTTTGATGTTTACAAGGAATGCAAAAAGAAGGAGAGGGAAGCACGACTGGAACGCAACCGACATCGCTCTCTCTTTTCATAG

Protein sequence

MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREARLERNRHRSLFS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06582.1Spo06582.1mRNA


Homology
[Close]
BLAST of Spo06582.1 vs. NCBI nr
Match: gi|902224101|gb|KNA19677.1| (hypothetical protein SOVF_059420 [Spinacia oleracea])

HSP 1 Score: 142.1 bits (357), Expect = 3.700e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR
Sbjct: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERNRHRSLFS
Sbjct: 61 LERNRHRSLFS 71
[Close]
BLAST of Spo06582.1 vs. NCBI nr
Match: gi|731360805|ref|XP_010692017.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 134.4 bits (337), Expect = 7.700e-29
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNS+KSKCQE FDVYKECKKKEREAR
Sbjct: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSDKSKCQEHFDVYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERNR RSLFS
Sbjct: 61 LERNRGRSLFS 71
[Close]
BLAST of Spo06582.1 vs. NCBI nr
Match: gi|596012354|ref|XP_007218661.1| (hypothetical protein PRUPE_ppa014382mg [Prunus persica])

HSP 1 Score: 127.1 bits (318), Expect = 1.200e-26
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASKV +PPYPSAARISDS CYPQYTASLKCLE+YNS+KSKCQE FD+YKECKKKEREAR
Sbjct: 1  MASKVSTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERN+ RSLFS
Sbjct: 61 LERNKTRSLFS 71
[Close]
BLAST of Spo06582.1 vs. NCBI nr
Match: gi|645253053|ref|XP_008232404.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Prunus mume])

HSP 1 Score: 125.6 bits (314), Expect = 3.600e-26
Identity = 61/71 (85.92%), Postives = 66/71 (92.96%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASK  +PPYPSAARISDS CYPQYTASLKCLE+YNS+KSKCQE FD+YKECKKKEREAR
Sbjct: 1  MASKASTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERN+ RSLFS
Sbjct: 61 LERNKTRSLFS 71
[Close]
BLAST of Spo06582.1 vs. NCBI nr
Match: gi|697137839|ref|XP_009622991.1| (PREDICTED: cytochrome c oxidase-assembly factor COX23, mitochondrial [Nicotiana tomentosiformis])

HSP 1 Score: 122.9 bits (307), Expect = 2.300e-25
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 1 

		  

Query: 2  ASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREARL 61
          +SK+++P YPSAARISDS CYPQYTASLKCLEQ+NS+KSKCQE FDVYKECKKKEREARL
Sbjct: 3  SSKIQTPAYPSAARISDSDCYPQYTASLKCLEQFNSDKSKCQEHFDVYKECKKKEREARL 62

Query: 62 ERNRHRSLFS 72
          ERNR RSLFS
Sbjct: 63 ERNRSRSLFS 72
[Close]
BLAST of Spo06582.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RLI1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_059420 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.600e-31
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR
Sbjct: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERNRHRSLFS
Sbjct: 61 LERNRHRSLFS 71
[Close]
BLAST of Spo06582.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BII6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g017450 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 5.300e-29
Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNS+KSKCQE FDVYKECKKKEREAR
Sbjct: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSDKSKCQEHFDVYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERNR RSLFS
Sbjct: 61 LERNRGRSLFS 71
[Close]
BLAST of Spo06582.1 vs. UniProtKB/TrEMBL
Match: M5XLD7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014382mg PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 8.500e-27
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASKV +PPYPSAARISDS CYPQYTASLKCLE+YNS+KSKCQE FD+YKECKKKEREAR
Sbjct: 1  MASKVSTPPYPSAARISDSQCYPQYTASLKCLEEYNSDKSKCQEHFDIYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERN+ RSLFS
Sbjct: 61 LERNKTRSLFS 71
[Close]
BLAST of Spo06582.1 vs. UniProtKB/TrEMBL
Match: V7B4C4_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G138900g PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.700e-25
Identity = 59/71 (83.10%), Postives = 66/71 (92.96%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASK  +PPYPSAARISDS C+PQYTASLKCLE++NS+KSKCQE FDVYKECKKKEREAR
Sbjct: 1  MASKGSTPPYPSAARISDSQCFPQYTASLKCLEEFNSDKSKCQEHFDVYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERN++RS FS
Sbjct: 61 LERNKNRSFFS 71
[Close]
BLAST of Spo06582.1 vs. UniProtKB/TrEMBL
Match: A0A0S3RVE9_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G197300 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 4.700e-25
Identity = 59/71 (83.10%), Postives = 67/71 (94.37%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKEREAR 60
          MASK  +PPYPSAARI+DS C+PQYTASLKCLE++NS+KSKCQE FDVYKECKKKEREAR
Sbjct: 1  MASKGSTPPYPSAARIADSQCFPQYTASLKCLEKFNSDKSKCQEHFDVYKECKKKEREAR 60

Query: 61 LERNRHRSLFS 72
          LERN++RSLFS
Sbjct: 61 LERNKNRSLFS 71
[Close]
BLAST of Spo06582.1 vs. TAIR (Arabidopsis)
Match: AT1G02160.2 (Cox19 family protein (CHCH motif))

HSP 1 Score: 83.2 bits (204), Expect = 7.200e-17
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 

		  

Query: 1  MASKVESPPYPSAARISDSSCYPQYTASLKCLEQYNSEKSKCQEFFDVYKECKKKE 57
          M++K  +  YPSAARISDS CY QY+ASLKCLE++ S+KSKCQ+ FDVYKECKKKE
Sbjct: 1  MSTKGAAAAYPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56
The following BLAST results are available for this feature:
BLAST of Spo06582.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902224101|gb|KNA19677.1|3.7e-31100.hypothetical protein SOVF_0594... [more]
gi|731360805|ref|XP_010692017.1|7.7e-2995.7PREDICTED: cytochrome c oxidas... [more]
gi|596012354|ref|XP_007218661.1|1.2e-2687.3hypothetical protein PRUPE_ppa... [more]
gi|645253053|ref|XP_008232404.1|3.6e-2685.9PREDICTED: cytochrome c oxidas... [more]
gi|697137839|ref|XP_009622991.1|2.3e-2585.7PREDICTED: cytochrome c oxidas... [more]
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BLAST of Spo06582.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RLI1_SPIOL2.6e-31100.Uncharacterized protein OS=Spi... [more]
A0A0J8BII6_BETVU5.3e-2995.7Uncharacterized protein OS=Bet... [more]
M5XLD7_PRUPE8.5e-2787.3Uncharacterized protein OS=Pru... [more]
V7B4C4_PHAVU4.7e-2583.1Uncharacterized protein OS=Pha... [more]
A0A0S3RVE9_PHAAN4.7e-2583.1Uncharacterized protein OS=Vig... [more]
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BLAST of Spo06582.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06582.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G02160.27.2e-1771.4Cox19 family protein (CHCH mot... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009069Cysteine alpha-hairpin motif superfamilyGENE3D1.10.810.10coord: 18..58
score: 1.
IPR009069Cysteine alpha-hairpin motif superfamilyunknownSSF47072Cysteine alpha-hairpin motifcoord: 20..58
score: 1.9
IPR010625CHCHPFAMPF06747CHCHcoord: 21..55
score: 2.
NoneNo IPR availablePANTHERPTHR21588COILED-COIL-HELIX-COILED-COIL-HELIX DOMAIN CONTAINING 6coord: 1..71
score: 1.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006301 postreplication repair
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo224510.66Barchart | Table