Spo06748 (gene) | SpinachBase

Overview


Name	Spo06748
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00619 : 240633 .. 241307 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAAAACTGGGGCTGGCCAGCAATCGGAATTGATCTCGGGTCTAGATTTTCAAGTGTAGGAGTTTGTCAGTATGACCGAGTTGATATTATAATGAACGATTAGGGCAACAGGAAAAACACCATCTTATGTTGCTTTTGTTGATAGTCATTGCCTTGTTGGTGATGCAGTTTTCGTAGTACTGCTATGAAACCAAAGGGGTGAAAGTTTTATTTGGAAATTTCTTTGACACAAAATTGATGCAGATTAAAGGAGAAGTAGAAGCCTTAGAACGAACCAAAGACGATGAGATGGAGTTGAGTATATTCCTTTCCTCCTTCATTTGTTATATCTGATGGATTTGCTGGTTTATCTTTGTTTTAACTTCATACAGGTCGGAGGGAGATTACAGACAAAGGGGGCAATGTTATGGTGCAAGCACCTACCCGAATGTCACATCCTCTGGAGGAGAGAGAAAACCTAAGACACATGATGAGAAAATAGTTTATGTTTAGTAGAGAATTAGTGAAATTTAGTGGCTTATTTAAGAACATATTGAGTATCATTCAAATTCAGATAGTCGTATACTTCTGTATTTTTGAGATAGATATATAATTTTTAATTGTATTAATTTGTACTCATTAGTTTTGTAGATTGAAAACTTTAGATGAAATGAAATAATGTTTTTTTGAA

mRNA sequence

ATGGAAGAAAACTGGGGCTGGCCAGCAATCGGAATTGATCTCGGGTCTAGATTTTCAAGTGTAGGAGTTTGTCAGTATGACCGATACTGCTATGAAACCAAAGGGGTGAAAGTTTTATTTGGAAATTTCTTTGACACAAAATTGATGCAGATTAAAGGAGAAGTAGAAGCCTTAGAACGAACCAAAGACGATGAGATGGAGTCGGAGGGAGATTACAGACAAAGGGGGCAATGTTATGGTGCAAGCACCTACCCGAATGTCACATCCTCTGGAGGAGAGAGAAAACCTAAGACACATGATGAGAAAATAGTTTATGTTTAGTAGAGAATTAGTGAAATTTAGTGGCTTATTTAAGAACATATTGAGTATCATTCAAATTCAGATAGTCGTATACTTCTGTATTTTTGAGATAGATATATAATTTTTAATTGTATTAATTTGTACTCATTAGTTTTGTAGATTGAAAACTTTAGATGAAATGAAATAATGTTTTTTTGAA

Coding sequence (CDS)

ATGGAAGAAAACTGGGGCTGGCCAGCAATCGGAATTGATCTCGGGTCTAGATTTTCAAGTGTAGGAGTTTGTCAGTATGACCGATACTGCTATGAAACCAAAGGGGTGAAAGTTTTATTTGGAAATTTCTTTGACACAAAATTGATGCAGATTAAAGGAGAAGTAGAAGCCTTAGAACGAACCAAAGACGATGAGATGGAGTCGGAGGGAGATTACAGACAAAGGGGGCAATGTTATGGTGCAAGCACCTACCCGAATGTCACATCCTCTGGAGGAGAGAGAAAACCTAAGACACATGATGAGAAAATAGTTTATGTTTAG

Protein sequence

MEENWGWPAIGIDLGSRFSSVGVCQYDRYCYETKGVKVLFGNFFDTKLMQIKGEVEALERTKDDEMESEGDYRQRGQCYGASTYPNVTSSGGERKPKTHDEKIVYV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06748.1	Spo06748.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo06748.1 vs. NCBI nr
BLAST of Spo06748.1 vs. UniProtKB/TrEMBL
BLAST of Spo06748.1 vs. ExPASy Swiss-Prot
BLAST of Spo06748.1 vs. TAIR (Arabidopsis)

BLAST of Spo06748.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06748.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06748.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06748.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..68 scor

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0010389	regulation of G2/M transition of mitotic cell cycle
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0010090	trichome morphogenesis
biological_process	GO:0051788	response to misfolded protein
biological_process	GO:0051510	regulation of unidimensional cell growth
biological_process	GO:0045859	regulation of protein kinase activity
biological_process	GO:0046838	phosphorylated carbohydrate dephosphorylation
biological_process	GO:0006552	leucine catabolic process
biological_process	GO:0051726	regulation of cell cycle
biological_process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process	GO:0043248	proteasome assembly
biological_process	GO:2000123	positive regulation of stomatal complex development
biological_process	GO:0042023	DNA endoreduplication
biological_process	GO:0008283	cell proliferation
biological_process	GO:0006550	isoleucine catabolic process
biological_process	GO:0009750	response to fructose
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006397	mRNA processing
biological_process	GO:0032482	Rab protein signal transduction
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0061025	membrane fusion
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0016049	cell growth
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0009744	response to sucrose
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0051017	actin filament bundle assembly
biological_process	GO:0015940	pantothenate biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006574	valine catabolic process
biological_process	GO:0051301	cell division
biological_process	GO:0051302	regulation of cell division
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process	GO:0005983	starch catabolic process
biological_process	GO:0032259	methylation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0000186	activation of MAPKK activity
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009987	cellular process
biological_process	GO:0009630	gravitropism
biological_process	GO:0031047	gene silencing by RNA
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009343	biotin carboxylase complex
cellular_component	GO:0022626	cytosolic ribosome
cellular_component	GO:0005759	mitochondrial matrix
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016020	membrane
cellular_component	GO:0005773	vacuole
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0050308	sugar-phosphatase activity
molecular_function	GO:2001070	starch binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:0019003	GDP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0019905	syntaxin binding
molecular_function	GO:0004075	biotin carboxylase activity
molecular_function	GO:0003779	actin binding
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0008022	protein C-terminus binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0004709	MAP kinase kinase kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0004485	methylcrotonoyl-CoA carboxylase activity
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0051213	dioxygenase activity
molecular_function	GO:0008897	holo-[acyl-carrier-protein] synthase activity
molecular_function	GO:0005525	GTP binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17386	0.75	Barchart \| Table
Spo06465	0.74	Barchart \| Table
Spo05444	0.74	Barchart \| Table
Spo10661	0.74	Barchart \| Table
Spo10500	0.73	Barchart \| Table
Spo05127	0.72	Barchart \| Table
Spo11069	0.72	Barchart \| Table
Spo02407	0.72	Barchart \| Table
Spo16804	0.72	Barchart \| Table
Spo23507	0.71	Barchart \| Table
Spo01841	0.71	Barchart \| Table
Spo02065	0.71	Barchart \| Table
Spo26560	0.71	Barchart \| Table
Spo10966	0.70	Barchart \| Table
Spo04999	0.70	Barchart \| Table
Spo03002	0.70	Barchart \| Table
Spo05640	0.70	Barchart \| Table
Spo22256	0.69	Barchart \| Table
Spo13318	0.69	Barchart \| Table
Spo09764	0.69	Barchart \| Table
Spo12107	0.69	Barchart \| Table
Spo22970	0.69	Barchart \| Table
Spo27004	0.69	Barchart \| Table
Spo22894	0.69	Barchart \| Table
Spo03851	0.69	Barchart \| Table
Spo03865	0.69	Barchart \| Table
Spo04985	0.69	Barchart \| Table
Spo05765	0.69	Barchart \| Table
Spo04448	0.68	Barchart \| Table
Spo20187	0.68	Barchart \| Table
Spo26814	0.68	Barchart \| Table
Spo15424	0.68	Barchart \| Table
Spo03442	0.68	Barchart \| Table
Spo19874	0.68	Barchart \| Table
Spo01801	0.68	Barchart \| Table
Spo01397	0.68	Barchart \| Table
Spo10427	0.68	Barchart \| Table
Spo10673	0.68	Barchart \| Table
Spo14826	0.68	Barchart \| Table
Spo05928	0.68	Barchart \| Table
Spo09219	0.68	Barchart \| Table
Spo24066	0.68	Barchart \| Table
Spo09214	0.68	Barchart \| Table
Spo06905	0.68	Barchart \| Table
Spo07079	0.68	Barchart \| Table
Spo07586	0.68	Barchart \| Table
Spo12719	0.68	Barchart \| Table
Spo20497	0.68	Barchart \| Table
Spo07959	0.68	Barchart \| Table
Spo19703	0.67	Barchart \| Table
Spo01048	0.67	Barchart \| Table
Spo01840	0.67	Barchart \| Table
Spo02175	0.67	Barchart \| Table
Spo02254	0.67	Barchart \| Table
Spo02348	0.67	Barchart \| Table
Spo02749	0.67	Barchart \| Table
Spo03163	0.67	Barchart \| Table
Spo03185	0.67	Barchart \| Table
Spo04179	0.67	Barchart \| Table
Spo04885	0.67	Barchart \| Table
Spo06464	0.67	Barchart \| Table
Spo07609	0.67	Barchart \| Table
Spo11296	0.67	Barchart \| Table
Spo11673	0.67	Barchart \| Table
Spo12623	0.67	Barchart \| Table
Spo14084	0.67	Barchart \| Table
Spo14942	0.67	Barchart \| Table
Spo15275	0.67	Barchart \| Table
Spo17755	0.67	Barchart \| Table
Spo22529	0.67	Barchart \| Table
Spo23664	0.67	Barchart \| Table
Spo24566	0.67	Barchart \| Table
Spo25330	0.67	Barchart \| Table
Spo25551	0.67	Barchart \| Table
Spo26789	0.67	Barchart \| Table
Spo08528	0.66	Barchart \| Table
Spo07882	0.66	Barchart \| Table
Spo25243	0.66	Barchart \| Table
Spo01069	0.66	Barchart \| Table
Spo21465	0.66	Barchart \| Table
Spo03861	0.66	Barchart \| Table
Spo01313	0.66	Barchart \| Table
Spo02647	0.66	Barchart \| Table
Spo23355	0.66	Barchart \| Table
Spo10021	0.66	Barchart \| Table
Spo09993	0.66	Barchart \| Table
Spo24018	0.66	Barchart \| Table
Spo11623	0.66	Barchart \| Table
Spo11641	0.66	Barchart \| Table
Spo11680	0.66	Barchart \| Table
Spo11918	0.66	Barchart \| Table
Spo09940	0.66	Barchart \| Table
Spo30013	0.66	Barchart \| Table
Spo08740	0.66	Barchart \| Table
Spo16218	0.66	Barchart \| Table
Spo16759	0.66	Barchart \| Table
Spo05955	0.66	Barchart \| Table
Spo00397	0.66	Barchart \| Table
Spo00283	0.66	Barchart \| Table
Spo05093	0.66	Barchart \| Table
Spo04657	0.66	Barchart \| Table
Spo04104	0.66	Barchart \| Table
Spo20696	0.66	Barchart \| Table
Spo15420	0.65	Barchart \| Table
Spo07685	0.65	Barchart \| Table
Spo21132	0.65	Barchart \| Table
Spo16421	0.65	Barchart \| Table
Spo21431	0.65	Barchart \| Table
Spo02345	0.65	Barchart \| Table
Spo17220	0.65	Barchart \| Table
Spo17235	0.65	Barchart \| Table
Spo05487	0.65	Barchart \| Table
Spo21729	0.65	Barchart \| Table
Spo26768	0.65	Barchart \| Table
Spo24736	0.65	Barchart \| Table
Spo03525	0.65	Barchart \| Table
Spo10019	0.65	Barchart \| Table
Spo02201	0.65	Barchart \| Table