Spo06876 (gene)

Overview
NameSpo06876
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionElectron transfer flavoprotein subunit alpha, mitochondrial
LocationSpoScf_01844 : 51368 .. 54308 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGGTCTCTTTGATATGCGAGATCTAATATCCTAAATAACGGGTCTCTAATATGCATTTGAGCCCACTAGTATACCGTGTGAAAAAGAAAATCAGAGATAACAGACCCCTTATGTCTGTCTACGGGTCTCAAGTCACATTAGGGCCCACCAATTTTTCGCTTCAAAAAAATATGCGAGACCCCTTAACTGGATACACGGGTCTCTTATCTCAACCAAAACTAAAAATAAATAAAATTTAGGTGACCATCCTCCCTTTCATAGTTTCGTTGCACACAATGACACAATCTCTCTCCTCAAGACTCAAATCATTTTGAGTTTCCATCTCCTTCTCTCTCTCTTTGTAGAAACTGCAACTATGGTTTATATCTTTCATCCTCTATTTCTCTTCCTCTCTCTTCTCTCTTCATATTTCACTAATCTAATTTAAATGACCTGTAACATTAGATCAATTGCGTTGGAAAATGGATGAATCGCAATGGCTATTCAAACACCGATTGCTGTCTCTCTTCCATCCAACAATCCCTGCCTTCGTTGGTATGTTTTCTACTTCGGGTTTTAAAAAATTAGGGTTTTTGTATGAGCAGTAAAGTTAGGTTTTCTAATTAGGACAAATAGGTTGTTATTGTTTGTTTATTGAGTAGGGATTTGAATGTTGTTAATTTCTTGGATTCTAAGGATTGTAGATGATTTATTTGATTGTTATTAAGTAATGGAATTTATATTATTTGAGTTGCACACCAAGTGTTTGATGAAATGCCCAATTATTTTTTGTATGTTTGATAATTTTGGATATCCAATATATGAACCACCGTGTTGGTCCTCTTTGCTCTTTGCTCTTTGCTCTCTGCCAATTTCCTTCTATGACTCACCAACGACAAATCAAGTTTTTTTAGTTTGTATTTTTTGAGTTGTCGACTCTATGGTTTTAAATTCAATTAGTTGAATTGTGAAAATATAGGTATGAGAAAGATAAGATGAAATGGATTATTACAATTGTGCTAGCTGGAAATTCTAGAATGCTTGAGCAATTGCGTACGTGTTGGCTTAAAGAGCATTGACAAAACGAAAGAGGTATCTTCATAATTTCCAAATTTGCACAAGGTCAAGTAATGATACAACTCAAGCGAACCAATTCACAATTTCATTGAATGGGTTTTACCATTTTTATATACTTGGTTGAATTAGTTTTAGATACAATAAATGAATTGTGACACAAAAATAGAATTGTTTATAATTAGTTGTCTACTGTATTGTCAAATTTCTATTAGAGCAGGAGTAATCAAATATTTTGTAAACCGAGTTTTTGACTATGCTGTGATTGGAAATATATATTGTTTCATTGTTATAGGGATGTAGTAGTATCGTTTCTATGAGTAGTTTTATTTTCTTGTATTATCAACTTATTATTGCCTTATGAGTGCCTACTTACGACAATTTATGCATTCTGATCCATTAAATATTTATATATCTTGCCTTATAGTTAAAATTTCTGTAAGCTCATATTTTGGTTCTTATTTGCAGAAACTCTGGAGAAACCTAGATTTGTAAAGCTTAGCTCTCATAATTGAGTGCCCTGATCTTGGAAATGCACGCATTGTAGTGACTGGAGGTTGAGGTTTAAACAGTTCCGAGAACTTCAAGATGATGGAGAAGCTGGCTGAGAAACTTGATATAAATGCATAAATCTGGTAATTGTTATGGAGAAAGTTGGTGGTCGAGGTTTAAAAACTTCCAGGAATTTCAAGATGATCGAGAAGCTTACTGGGAAACTTGATGCAGCAGGTAGTTTAAAACATTTATTCAACTTGACAGCATAAGTATAGTAATTATTATATACATAGATAGTTTTGGTGTCACGTGCTTGAATCGAGTATAATACATTTGTCCCCTTTTAAATCTGTTTTCCCTCTTGAGTTCAATACTTGACTATACCCTGTTTGCTGCCTTTTTCTAGTTAAAGCTTTACGTGGTGTTGTTCTTGCGGGATACATTTCCAATGAACTACAGGTAATTTAATGCCTCTAATTGTGCTTGTAGATTGCTTGATCTAAATTATGTTAATATGGTCTGCCTATTTCATTAGTCCTATGTTAAATCTCCCAGCTTCACTTTGAAAGGGTGTAGCAGCTATATATGAACAAAATGATTTAATGTTCATAAGCCTCTTGTCTTTGTAAGGATATCTAAAGTTGATATGACTACCTATGTCATGGCATTAGGTAATAAGTGTAGTAGCTGGAACTCAATACATCCGAGTTTCCAATTAAAAAAGGTCACTAAAATAATTCCTTAAAACAAACTCATTTATATATCCGTTTAAGTTTCTTACCCTCCAAAAACGAGAAAGCTACATTATAAAGTTTTTTTATGTTTTTTTGTCAGCCAAATCAACACAATTCGTTTTTTTAGTCCGTGCTTGTCTACTCGATAGTTTACCAATGAACAAAGTGTACAAGTTAATATGAAATGCTCAATTCCAGTTGGAGATTGTTTTGACTTATCTTTTTGAGTTGTTTTCTTTTCATCTTAGTATTGCATTCTATTGTTGGTATGCATGCAATCGACCACACTTTTGCATCTAGGTAGGAAATTTTGTTGTATATTTATTGAAAATTTGGCTCACTCTTTGCTTGCATATTTTTTTGTAGTCTGAAACCAAGCATGCTCTGGGTAATAGTCGGATGAATGAGCCCCTGGTTGCTCGCTCGTGCCTGTTTGGTCTTATGCTTGTTTGGAAGAGCTTCTCGGATATCGAAGTACGAGATGCGTTGCTCTGTATTGAAAAACTTTTTTTTGTTTTACTCAAGGTGCTTGTGCCCACATTAGTAATATGCATTACTGTCGCTTTAGGATCTTGTCACAGTTATGCAGACCTTAGAGTTTTTTTTCTACTTTTTTTTTAAAGAATAATGTAAGATTTTCTTTTTTGTTAATAGTATGA

mRNA sequence

GGGTCTCTTTGATATGCGAGATCTAATATCCTAAATAACGGGTCTCTAATATGCATTTGAGCCCACTAGTATACCGTGTGAAAAAGAAAATCAGAGATAACAGACCCCTTATGTCTGTCTACGGGTCTCAAGTCACATTAGGGCCCACCAATTTTTCGCTTCAAAAAAATATGCGAGACCCCTTAACTGGATACACGGGTCTCTTATCTCAACCAAAACTAAAAATAAATAAAATTTAGGTGACCATCCTCCCTTTCATAGTTTCGTTGCACACAATGACACAATCTCTCTCCTCAAGACTCAAATCATTTTGAGTTTCCATCTCCTTCTCTCTCTCTTTGTAGAAACTGCAACTATGGTTTATATCTTTCATCCTCTATTTCTCTTCCTCTCTCTTCTCTCTTCATATTTCACTAATCTAATTTAAATGACCTGTAACATTAGATCAATTGCGTTGGAAAATGGATGAATCGCAATGGCTATTCAAACACCGATTGCTGTCTCTCTTCCATCCAACAATCCCTGCCTTCGTTGAAACTCTGGAGAAACCTAGATTTGTAAAGCTTAGCTCTCATAATTGAGTGCCCTGATCTTGGAAATGCACGCATTGTAGTGACTGGAGGTTGAGGTTTAAACAGTTCCGAGAACTTCAAGATGATGGAGAAGCTGGCTGAGAAACTTGATATAAATGCATAAATCTGGTAATTGTTATGGAGAAAGTTGGTGGTCGAGGTTTAAAAACTTCCAGGAATTTCAAGATGATCGAGAAGCTTACTGGGAAACTTGATGCAGCAGTTAAAGCTTTACGTGGTGTTGTTCTTGCGGGATACATTTCCAATGAACTACAGTCTGAAACCAAGCATGCTCTGGGTAATAGTCGGATGAATGAGCCCCTGGTTGCTCGCTCGTGCCTGTTTGGTCTTATGCTTGTTTGGAAGAGCTTCTCGGATATCGAAAATAATGTAAGATTTTCTTTTTTGTTAATAGTATGA

Coding sequence (CDS)

ATGGAGAAAGTTGGTGGTCGAGGTTTAAAAACTTCCAGGAATTTCAAGATGATCGAGAAGCTTACTGGGAAACTTGATGCAGCAGTTAAAGCTTTACGTGGTGTTGTTCTTGCGGGATACATTTCCAATGAACTACAGTCTGAAACCAAGCATGCTCTGGGTAATAGTCGGATGAATGAGCCCCTGGTTGCTCGCTCGTGCCTGTTTGGTCTTATGCTTGTTTGGAAGAGCTTCTCGGATATCGAAAATAATGTAAGATTTTCTTTTTTGTTAATAGTATGA

Protein sequence

MEKVGGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQSETKHALGNSRMNEPLVARSCLFGLMLVWKSFSDIENNVRFSFLLIV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06876.1Spo06876.1mRNA


Homology
[Close]
BLAST of Spo06876.1 vs. NCBI nr
Match: gi|902167834|gb|KNA07425.1| (hypothetical protein SOVF_172030 [Spinacia oleracea])

HSP 1 Score: 58.2 bits (139), Expect = 9.200e-6
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 

		  

Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFKMIEKL  KLDAAV A R  V AG+I NELQ
Sbjct: 240 GGRGLKSAENFKMIEKLAEKLDAAVGATRAAVDAGFIPNELQ 281
[Close]
BLAST of Spo06876.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QJJ0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_172030 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 6.400e-6
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 

		  

Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFKMIEKL  KLDAAV A R  V AG+I NELQ
Sbjct: 240 GGRGLKSAENFKMIEKLAEKLDAAVGATRAAVDAGFIPNELQ 281
[Close]
BLAST of Spo06876.1 vs. ExPASy Swiss-Prot
Match: ETFA_ORYSJ (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Oryza sativa subsp. japonica GN=ETFA PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.000e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 

		  

Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFK++E+L  KL AAV A R  V AG++ NELQ
Sbjct: 245 GGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQ 286
[Close]
BLAST of Spo06876.1 vs. ExPASy Swiss-Prot
Match: ETFA_ORYSI (Electron transfer flavoprotein subunit alpha, mitochondrial OS=Oryza sativa subsp. indica GN=ETFA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 7.000e-6
Identity = 25/42 (59.52%), Postives = 32/42 (76.19%), Query Frame = 1 

		  

Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGRGLK++ NFK++E+L  KL AAV A R  V AG++ NELQ
Sbjct: 245 GGRGLKSAENFKVLEQLAEKLGAAVGATRAAVDAGFVPNELQ 286
[Close]
BLAST of Spo06876.1 vs. TAIR (Arabidopsis)
Match: AT1G50940.1 (electron transfer flavoprotein alpha)

HSP 1 Score: 50.4 bits (119), Expect = 6.700e-7
Identity = 26/42 (61.90%), Postives = 29/42 (69.05%), Query Frame = 1 

		  

Query: 5   GGRGLKTSRNFKMIEKLTGKLDAAVKALRGVVLAGYISNELQ 47
           GGR LK+  NFKMIEKL  KL  AV A R  V AGY+ N+LQ
Sbjct: 250 GGRALKSVENFKMIEKLAEKLGGAVGATRAAVDAGYVPNDLQ 291
The following BLAST results are available for this feature:
BLAST of Spo06876.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902167834|gb|KNA07425.1|9.2e-671.4hypothetical protein SOVF_1720... [more]
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BLAST of Spo06876.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9QJJ0_SPIOL6.4e-671.4Uncharacterized protein OS=Spi... [more]
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BLAST of Spo06876.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ETFA_ORYSJ7.0e-659.5Electron transfer flavoprotein... [more]
ETFA_ORYSI7.0e-659.5Electron transfer flavoprotein... [more]
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BLAST of Spo06876.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT1G50940.16.7e-761.9electron transfer flavoprotein... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014731Electron transfer flavoprotein, alpha subunit, C-terminalPFAMPF00766ETF_alphacoord: 5..46
score: 7.

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0006816 calcium ion transport
biological_process GO:0009630 gravitropism
biological_process GO:0006486 protein glycosylation
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006885 regulation of pH
biological_process GO:0006397 mRNA processing
biological_process GO:0006623 protein targeting to vacuole
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0043167 ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0015299 solute:proton antiporter activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003723 RNA binding
RNA-Seq Expression