Spo06890 (gene)

Overview
NameSpo06890
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionA0A061FTS5 (CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative)
Locationchr5 : 7390965 .. 7391231 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAGGGAACAATAACGAGACTTCATGGGCAGATCAATGGGATCCACAACCAGCTTACGGCGGCGGCCATGATTATAATGACAACAAAGCGAAGAAGAAGGGCGGCGACAATGGTTCCGGTGGCGGCGCAAAGAAGAAGGTTGAAGAAGGACTTGCTAAGACTAAGGATGTTGCTTCTACTGGTTTTAAGAAGGTCAAACAGGGTACTTCGTTTGGGTTCAATTGGATCAAAGACAAGTGCCAGAAAACCACCCAAAAAGAGTGA

mRNA sequence

ATGTCAGGGAACAATAACGAGACTTCATGGGCAGATCAATGGGATCCACAACCAGCTTACGGCGGCGGCCATGATTATAATGACAACAAAGCGAAGAAGAAGGGCGGCGACAATGGTTCCGGTGGCGGCGCAAAGAAGAAGGTTGAAGAAGGACTTGCTAAGACTAAGGATGTTGCTTCTACTGGTTTTAAGAAGGTCAAACAGGGTACTTCGTTTGGGTTCAATTGGATCAAAGACAAGTGCCAGAAAACCACCCAAAAAGAGTGA

Coding sequence (CDS)

ATGTCAGGGAACAATAACGAGACTTCATGGGCAGATCAATGGGATCCACAACCAGCTTACGGCGGCGGCCATGATTATAATGACAACAAAGCGAAGAAGAAGGGCGGCGACAATGGTTCCGGTGGCGGCGCAAAGAAGAAGGTTGAAGAAGGACTTGCTAAGACTAAGGATGTTGCTTCTACTGGTTTTAAGAAGGTCAAACAGGGTACTTCGTTTGGGTTCAATTGGATCAAAGACAAGTGCCAGAAAACCACCCAAAAAGAGTGA

Protein sequence

MSGNNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVASTGFKKVKQGTSFGFNWIKDKCQKTTQKE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06890.1Spo06890.1mRNA


Homology
[Close]
BLAST of Spo06890.1 vs. NCBI nr
Match: gi|902192477|gb|KNA12053.1| (hypothetical protein SOVF_129400 [Spinacia oleracea])

HSP 1 Score: 176.0 bits (445), Expect = 2.800e-41
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 

		  

Query: 1  MSGNNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60
          MSGNNNETSWADQWD QPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS
Sbjct: 1  MSGNNNETSWADQWDLQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60

Query: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 89
          TGFKKVKQGTSFGFNWIKDKCQKTTQKE
Sbjct: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 88
[Close]
BLAST of Spo06890.1 vs. NCBI nr
Match: gi|731335356|ref|XP_010678686.1| (PREDICTED: uncharacterized protein LOC104894204 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 109.0 bits (271), Expect = 4.300e-21
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1 

		  

Query: 2  SGNNN-ETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 61
          SGN N E+SWADQWDPQPAY      ++N++K K  +N SGGGAKKKVEEGL KTK+VAS
Sbjct: 3  SGNTNYESSWADQWDPQPAYVS----HENESKNKKKNNESGGGAKKKVEEGLTKTKEVAS 62

Query: 62 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          T FKKVKQGTS G +WIKDK  KTTQK
Sbjct: 63 TSFKKVKQGTSMGISWIKDKYHKTTQK 85
[Close]
BLAST of Spo06890.1 vs. NCBI nr
Match: gi|1000984674|ref|XP_015579178.1| (PREDICTED: uncharacterized protein LOC8258122 [Ricinus communis])

HSP 1 Score: 86.3 bits (212), Expect = 3.000e-14
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 1 

		  

Query: 3  GNNNETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 62
          G++NETSWADQWD  P P     HDY ++K+        S    K+KV EGL KTK+VAS
Sbjct: 2  GSSNETSWADQWDDGPDPV----HDYQNSKSNS----TSSTAKYKQKVGEGLGKTKEVAS 61

Query: 63 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          TGFKKVK+GT  GF+WIKDK QK TQK
Sbjct: 62 TGFKKVKEGTVSGFHWIKDKYQKKTQK 80
[Close]
BLAST of Spo06890.1 vs. NCBI nr
Match: gi|224135737|ref|XP_002322148.1| (hypothetical protein POPTR_0015s08200g [Populus trichocarpa])

HSP 1 Score: 82.0 bits (201), Expect = 5.600e-13
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 1 

		  

Query: 1  MSGNNN-ETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKD 60
          MSGN++ ETSWADQWD  P PA    +D++      K   + S    K+KV EGL KTK 
Sbjct: 1  MSGNSSHETSWADQWDYNPDPAV---YDHS------KDSSSDSTAKYKQKVGEGLGKTKQ 60

Query: 61 VASTGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          VASTG KKVK+GTS GF WIKDK QKTTQK
Sbjct: 61 VASTGIKKVKEGTSVGFRWIKDKYQKTTQK 81
[Close]
BLAST of Spo06890.1 vs. NCBI nr
Match: gi|661895644|emb|CDP00222.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 81.6 bits (200), Expect = 7.300e-13
Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 1 

		  

Query: 4  NNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVASTGF 63
          N +ETSWADQWDP+PAY G ++ N+  +        S      KV +   KTKDVASTG 
Sbjct: 8  NTSETSWADQWDPEPAYNGNYNSNNKSS--------STSKFSSKVGDTFGKTKDVASTGV 67

Query: 64 KKVKQGTSFGFNWIKDKCQKTTQK 88
          KKVK+GT  GF+WIKDK QK  QK
Sbjct: 68 KKVKEGTRAGFHWIKDKYQKRAQK 83
[Close]
BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QZB7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_129400 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 2.000e-41
Identity = 87/88 (98.86%), Postives = 87/88 (98.86%), Query Frame = 1 

		  

Query: 1  MSGNNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60
          MSGNNNETSWADQWD QPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS
Sbjct: 1  MSGNNNETSWADQWDLQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 60

Query: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 89
          TGFKKVKQGTSFGFNWIKDKCQKTTQKE
Sbjct: 61 TGFKKVKQGTSFGFNWIKDKCQKTTQKE 88
[Close]
BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CAA2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g116260 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 3.000e-21
Identity = 61/87 (70.11%), Postives = 69/87 (79.31%), Query Frame = 1 

		  

Query: 2  SGNNN-ETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 61
          SGN N E+SWADQWDPQPAY      ++N++K K  +N SGGGAKKKVEEGL KTK+VAS
Sbjct: 3  SGNTNYESSWADQWDPQPAYVS----HENESKNKKKNNESGGGAKKKVEEGLTKTKEVAS 62

Query: 62 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          T FKKVKQGTS G +WIKDK  KTTQK
Sbjct: 63 TSFKKVKQGTSMGISWIKDKYHKTTQK 85
[Close]
BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: B9R8Y7_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1512610 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.100e-14
Identity = 51/87 (58.62%), Postives = 60/87 (68.97%), Query Frame = 1 

		  

Query: 3  GNNNETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVAS 62
          G++NETSWADQWD  P P     HDY ++K+        S    K+KV EGL KTK+VAS
Sbjct: 2  GSSNETSWADQWDDGPDPV----HDYQNSKSNS----TSSTAKYKQKVGEGLGKTKEVAS 61

Query: 63 TGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          TGFKKVK+GT  GF+WIKDK QK TQK
Sbjct: 62 TGFKKVKEGTVSGFHWIKDKYQKKTQK 80
[Close]
BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: B9IEL5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s08200g PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.900e-13
Identity = 53/90 (58.89%), Postives = 61/90 (67.78%), Query Frame = 1 

		  

Query: 1  MSGNNN-ETSWADQWD--PQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKD 60
          MSGN++ ETSWADQWD  P PA    +D++      K   + S    K+KV EGL KTK 
Sbjct: 1  MSGNSSHETSWADQWDYNPDPAV---YDHS------KDSSSDSTAKYKQKVGEGLGKTKQ 60

Query: 61 VASTGFKKVKQGTSFGFNWIKDKCQKTTQK 88
          VASTG KKVK+GTS GF WIKDK QKTTQK
Sbjct: 61 VASTGIKKVKEGTSVGFRWIKDKYQKTTQK 81
[Close]
BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Match: A0A068TW42_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00032103001 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.100e-13
Identity = 45/84 (53.57%), Postives = 54/84 (64.29%), Query Frame = 1 

		  

Query: 4  NNNETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAKKKVEEGLAKTKDVASTGF 63
          N +ETSWADQWDP+PAY G ++ N+  +        S      KV +   KTKDVASTG 
Sbjct: 8  NTSETSWADQWDPEPAYNGNYNSNNKSS--------STSKFSSKVGDTFGKTKDVASTGV 67

Query: 64 KKVKQGTSFGFNWIKDKCQKTTQK 88
          KKVK+GT  GF+WIKDK QK  QK
Sbjct: 68 KKVKEGTRAGFHWIKDKYQKRAQK 83
[Close]
BLAST of Spo06890.1 vs. TAIR (Arabidopsis)
Match: AT3G48180.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.600e-10
Identity = 40/83 (48.19%), Postives = 48/83 (57.83%), Query Frame = 1 

		  

Query: 9  SWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGA----KKKVEEGLAKTKDVASTGFK 68
          SWA+QWD           ++ ++  K    G GGGA    K+KV  GL KTK  AS+G K
Sbjct: 5  SWAEQWD-----------SNQQSSGKTTHGGEGGGASSKYKEKVGAGLGKTKAAASSGLK 64

Query: 69 KVKQGTSFGFNWIKDKCQKTTQK 88
          KVK GTS G NW+KDK  KTT K
Sbjct: 65 KVKIGTSLGLNWVKDKYNKTTTK 76
[Close]
BLAST of Spo06890.1 vs. TAIR (Arabidopsis)
Match: AT1G19020.1 (unknown protein)

HSP 1 Score: 62.4 bits (150), Expect = 1.600e-10
Identity = 37/85 (43.53%), Postives = 48/85 (56.47%), Query Frame = 1 

		  

Query: 6  NETSWADQWDPQPAYGGGHDYNDNKAKKKGGDNGSGGGAK--KKVEEGLAKTKDVASTGF 65
          N TSWADQWD       G         +  G   +    K  +K+ +GL KTK VAS+GF
Sbjct: 2  NGTSWADQWDNSGDSAKGGRIGSGAVVRSSGSGATSNTTKYKEKMGQGLDKTKAVASSGF 61

Query: 66 KKVKQGTSFGFNWIKDKCQKTTQKE 89
          KK+K G++ GF W+KDK  KTT K+
Sbjct: 62 KKLKTGSAIGFRWVKDKYHKTTHKQ 86
The following BLAST results are available for this feature:
BLAST of Spo06890.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902192477|gb|KNA12053.1|2.8e-4198.8hypothetical protein SOVF_1294... [more]
gi|731335356|ref|XP_010678686.1|4.3e-2170.1PREDICTED: uncharacterized pro... [more]
gi|1000984674|ref|XP_015579178.1|3.0e-1458.6PREDICTED: uncharacterized pro... [more]
gi|224135737|ref|XP_002322148.1|5.6e-1358.8hypothetical protein POPTR_001... [more]
gi|661895644|emb|CDP00222.1|7.3e-1353.5unnamed protein product [Coffe... [more]
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BLAST of Spo06890.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QZB7_SPIOL2.0e-4198.8Uncharacterized protein OS=Spi... [more]
A0A0J8CAA2_BETVU3.0e-2170.1Uncharacterized protein OS=Bet... [more]
B9R8Y7_RICCO2.1e-1458.6Putative uncharacterized prote... [more]
B9IEL5_POPTR3.9e-1358.8Uncharacterized protein OS=Pop... [more]
A0A068TW42_COFCA5.1e-1353.5Uncharacterized protein OS=Cof... [more]
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BLAST of Spo06890.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06890.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT3G48180.11.6e-1048.1unknown protein[more]
AT1G19020.11.6e-1043.5unknown protein[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33386FAMILY NOT NAMEDcoord: 3..88
score: 4.7
NoneNo IPR availablePANTHERPTHR33386:SF4SUBFAMILY NOT NAMEDcoord: 3..88
score: 4.7

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:2000038 regulation of stomatal complex development
biological_process GO:0048481 plant ovule development
biological_process GO:0080136 priming of cellular response to stress
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0043900 regulation of multi-organism process
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:2000037 regulation of stomatal complex patterning
biological_process GO:0002213 defense response to insect
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009409 response to cold
biological_process GO:0001666 response to hypoxia
biological_process GO:0010224 response to UV-B
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0043069 negative regulation of programmed cell death
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0010229 inflorescence development
biological_process GO:0009595 detection of biotic stimulus
biological_process GO:0042742 defense response to bacterium
biological_process GO:0010120 camalexin biosynthetic process
biological_process GO:0000169 activation of MAPK activity involved in osmosensory signaling pathway
biological_process GO:0009738 abscisic acid-activated signaling pathway
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0009741 response to brassinosteroid
biological_process GO:0016310 phosphorylation
biological_process GO:0006857 oligopeptide transport
cellular_component GO:0005634 nucleus
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005834 heterotrimeric G-protein complex
molecular_function GO:0005524 ATP binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0016301 kinase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0005515 protein binding
molecular_function GO:0004707 MAP kinase activity
RNA-Seq Expression