Spo06953 (gene) | SpinachBase

Overview


Name	Spo06953
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Peroxiredoxin Q, chloroplastic
Location	chr5 : 52991925 .. 52992422 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTATCCCAAACCCAAAATCCTCATCTTTCAATAACTTTTCTTCATATGATTCCCCTGCATTTCTAAGACATGGAAACCCCAATTCCCTTTCCCTTTCCGCAAAAAACAAATACTGGGTGATACAATCACAGAGCAAGGAACAAGAAGAAGGAATCGATGAAGAGTTGAAAAAACGTTTACTGGTGTTCAGTGGAGCTACTTCAATTGGGATTTTGCTGATGATGATGGGCCAAGATAAGGCATGGGCTTTAGGCCCAGAAGGTCCATTAATGGAGGAATTCTGGGAGAATGTAAGAAGGTATGCATTGTATGCACTTACTGTAAGTACTGGGGTTCTTTATGCAGTTTTACAGCCTATTTTTGAGCTGCTTAAGAACCCAATCTCTGCAGTTCTGGTTGTCATTGTCATAGGTGGCTCCTTTTTCATCGTTTCTCAAATTGTTTCTGCTATGGTTGGCGTCTCCGATTTCTCTTATCAATACGCTTATTAG

mRNA sequence

ATGAAATCTATCCCAAACCCAAAATCCTCATCTTTCAATAACTTTTCTTCATATGATTCCCCTGCATTTCTAAGACATGGAAACCCCAATTCCCTTTCCCTTTCCGCAAAAAACAAATACTGGGTGATACAATCACAGAGCAAGGAACAAGAAGAAGGAATCGATGAAGAGTTGAAAAAACGTTTACTGGTGTTCAGTGGAGCTACTTCAATTGGGATTTTGCTGATGATGATGGGCCAAGATAAGGCATGGGCTTTAGGCCCAGAAGGTCCATTAATGGAGGAATTCTGGGAGAATGTAAGAAGGTATGCATTGTATGCACTTACTGTAAGTACTGGGGTTCTTTATGCAGTTTTACAGCCTATTTTTGAGCTGCTTAAGAACCCAATCTCTGCAGTTCTGGTTGTCATTGTCATAGGTGGCTCCTTTTTCATCGTTTCTCAAATTGTTTCTGCTATGGTTGGCGTCTCCGATTTCTCTTATCAATACGCTTATTAG

Coding sequence (CDS)

ATGAAATCTATCCCAAACCCAAAATCCTCATCTTTCAATAACTTTTCTTCATATGATTCCCCTGCATTTCTAAGACATGGAAACCCCAATTCCCTTTCCCTTTCCGCAAAAAACAAATACTGGGTGATACAATCACAGAGCAAGGAACAAGAAGAAGGAATCGATGAAGAGTTGAAAAAACGTTTACTGGTGTTCAGTGGAGCTACTTCAATTGGGATTTTGCTGATGATGATGGGCCAAGATAAGGCATGGGCTTTAGGCCCAGAAGGTCCATTAATGGAGGAATTCTGGGAGAATGTAAGAAGGTATGCATTGTATGCACTTACTGTAAGTACTGGGGTTCTTTATGCAGTTTTACAGCCTATTTTTGAGCTGCTTAAGAACCCAATCTCTGCAGTTCTGGTTGTCATTGTCATAGGTGGCTCCTTTTTCATCGTTTCTCAAATTGTTTCTGCTATGGTTGGCGTCTCCGATTTCTCTTATCAATACGCTTATTAG

Protein sequence

MKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo06953.1	Spo06953.1	mRNA

Homology

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|902189558|gb|KNA11397.1| (hypothetical protein SOVF_135610 [Spinacia oleracea])

HSP 1 Score: 313.9 bits (803), Expect = 1.600e-82
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 1

		  
Query: 1   MKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 60
           +KSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK
Sbjct: 19  IKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 78

Query: 61  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 120
           RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ
Sbjct: 79  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 138

Query: 121 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY
Sbjct: 139 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 183

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|731350702|ref|XP_010686638.1| (PREDICTED: uncharacterized protein LOC104900815 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 197.2 bits (500), Expect = 2.200e-47
Identity = 112/172 (65.12%), Postives = 131/172 (76.16%), Query Frame = 1

		  
Query: 5   PNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQE---------EGID 64
           PN K SSF  F SY SPAFL  G P       K KYW+I+S +KE++         E  D
Sbjct: 20  PNLKFSSFG-FPSY-SPAFLGKGIPVPPKFPTKFKYWLIKSHNKEKDTTLSAAAVDENDD 79

Query: 65  EELKKR--LLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 124
           +E  +R    V +GA SIG+LL++MGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG
Sbjct: 80  DEFHRRKSFQVITGAVSIGLLLLIMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 139

Query: 125 VLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           VLYAV QPI+ELLKNPISAVL +I+IGGS FI+SQ++ +MVGVSDFSY+YAY
Sbjct: 140 VLYAVFQPIYELLKNPISAVLTLIIIGGSIFIISQVLYSMVGVSDFSYEYAY 189

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|697103259|ref|XP_009605363.1| (PREDICTED: uncharacterized protein LOC104099929 [Nicotiana tomentosiformis])

HSP 1 Score: 157.9 bits (398), Expect = 1.500e-35
Identity = 81/140 (57.86%), Postives = 116/140 (82.86%), Query Frame = 1

		  
Query: 29  PNSLSLSAKNKYWVIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMG---QDKAWA 88
           P +L +S K+K +  +++  E E G++E+  K L++  GA S+G++L ++G   Q+KA A
Sbjct: 50  PIALQISHKSKIFS-RTEISESEAGLNEKSSKLLVL--GAVSVGVMLFLLGFDDQNKALA 109

Query: 89  LGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFI 148
           LGPEGPLMEEFW+N+RRYA+YALTVSTGVL+AV +PI+ELLKNPISA+L+++++GGSF+I
Sbjct: 110 LGPEGPLMEEFWDNMRRYAIYALTVSTGVLWAVFEPIYELLKNPISAILILVIMGGSFYI 169

Query: 149 VSQIVSAMVGVSDFSYQYAY 166
           VSQ+VSAMVG++DF+Y Y Y
Sbjct: 170 VSQVVSAMVGITDFAYDYNY 186

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|698439228|ref|XP_009758196.1| (PREDICTED: uncharacterized protein LOC104210918 [Nicotiana sylvestris])

HSP 1 Score: 156.0 bits (393), Expect = 5.700e-35
Identity = 80/140 (57.14%), Postives = 115/140 (82.14%), Query Frame = 1

		  
Query: 29  PNSLSLSAKNKYWVIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMG---QDKAWA 88
           P +L +  K+K  + ++++ E E  ++E+  K L++  GA S+G++L +MG   Q+KA A
Sbjct: 50  PIALQILHKSKK-ISRTENSESETSLNEKSSKLLVL--GAVSVGVMLFLMGFDDQNKALA 109

Query: 89  LGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFI 148
           LGPEGPLMEEFW+N+RRYA+YALTVSTGVL+AV +PI+ELLKNPISA+L+++++GGSF+I
Sbjct: 110 LGPEGPLMEEFWDNMRRYAIYALTVSTGVLWAVFEPIYELLKNPISAILILVIMGGSFYI 169

Query: 149 VSQIVSAMVGVSDFSYQYAY 166
           VSQ+VSAMVG++DF+Y Y Y
Sbjct: 170 VSQVVSAMVGITDFAYDYNY 186

[Close]

BLAST of Spo06953.1 vs. NCBI nr
Match: gi|255563788|ref|XP_002522895.1| (PREDICTED: uncharacterized protein LOC8280775 [Ricinus communis])

HSP 1 Score: 150.6 bits (379), Expect = 2.400e-33
Identity = 81/135 (60.00%), Postives = 102/135 (75.56%), Query Frame = 1

		  
Query: 35  SAKNKYW--VIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMGQD--KAWALGPEG 94
           S K+ Y+  + Q   +E+   +      R +V  GA S+G++L +MG D  KA ALGPEG
Sbjct: 52  SQKSLYFKPICQKHLREKRSNVSPNGCLRSVVV-GAASVGVVLFLMGMDEHKALALGPEG 111

Query: 95  PLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIV 154
           PLMEEFW+NVRRYALYALTVSTG LY +LQPI ELLKNPISAVLV+++ GGSF+IVSQ++
Sbjct: 112 PLMEEFWDNVRRYALYALTVSTGALYTILQPIVELLKNPISAVLVIVIFGGSFYIVSQVL 171

Query: 155 SAMVGVSDFSYQYAY 166
           SAM G++DFSY Y Y
Sbjct: 172 SAMFGITDFSYDYGY 185

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVT6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135610 PE=4 SV=1)

HSP 1 Score: 313.9 bits (803), Expect = 1.100e-82
Identity = 164/165 (99.39%), Postives = 165/165 (100.00%), Query Frame = 1

		  
Query: 1   MKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 60
           +KSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK
Sbjct: 19  IKSIPNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQEEGIDEELKK 78

Query: 61  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 120
           RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ
Sbjct: 79  RLLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQ 138

Query: 121 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY
Sbjct: 139 PIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 183

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTB7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g184580 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.600e-47
Identity = 112/172 (65.12%), Postives = 131/172 (76.16%), Query Frame = 1

		  
Query: 5   PNPKSSSFNNFSSYDSPAFLRHGNPNSLSLSAKNKYWVIQSQSKEQE---------EGID 64
           PN K SSF  F SY SPAFL  G P       K KYW+I+S +KE++         E  D
Sbjct: 20  PNLKFSSFG-FPSY-SPAFLGKGIPVPPKFPTKFKYWLIKSHNKEKDTTLSAAAVDENDD 79

Query: 65  EELKKR--LLVFSGATSIGILLMMMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 124
           +E  +R    V +GA SIG+LL++MGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG
Sbjct: 80  DEFHRRKSFQVITGAVSIGLLLLIMGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTG 139

Query: 125 VLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           VLYAV QPI+ELLKNPISAVL +I+IGGS FI+SQ++ +MVGVSDFSY+YAY
Sbjct: 140 VLYAVFQPIYELLKNPISAVLTLIIIGGSIFIISQVLYSMVGVSDFSYEYAY 189

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: B9SA76_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0862830 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.700e-33
Identity = 81/135 (60.00%), Postives = 102/135 (75.56%), Query Frame = 1

		  
Query: 35  SAKNKYW--VIQSQSKEQEEGIDEELKKRLLVFSGATSIGILLMMMGQD--KAWALGPEG 94
           S K+ Y+  + Q   +E+   +      R +V  GA S+G++L +MG D  KA ALGPEG
Sbjct: 52  SQKSLYFKPICQKHLREKRSNVSPNGCLRSVVV-GAASVGVVLFLMGMDEHKALALGPEG 111

Query: 95  PLMEEFWENVRRYALYALTVSTGVLYAVLQPIFELLKNPISAVLVVIVIGGSFFIVSQIV 154
           PLMEEFW+NVRRYALYALTVSTG LY +LQPI ELLKNPISAVLV+++ GGSF+IVSQ++
Sbjct: 112 PLMEEFWDNVRRYALYALTVSTGALYTILQPIVELLKNPISAVLVIVIFGGSFYIVSQVL 171

Query: 155 SAMVGVSDFSYQYAY 166
           SAM G++DFSY Y Y
Sbjct: 172 SAMFGITDFSYDYGY 185

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: A0A061GIF1_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_030411 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.900e-33
Identity = 75/104 (72.12%), Postives = 89/104 (85.58%), Query Frame = 1

		  
Query: 64  VFSGATSIGILLMMMGQD--KAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQP 123
           V  GA SIG+ L++MG D  KA A GPEGPLMEEFW+NVRRYALYALTVSTG +Y + QP
Sbjct: 91  VIVGAVSIGLALLLMGADDQKALAFGPEGPLMEEFWDNVRRYALYALTVSTGAIYTIFQP 150

Query: 124 IFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           I ELLKNPISA+L++++IGGS +IVSQI+SAMVGV+DFSY YAY
Sbjct: 151 ILELLKNPISAILILVIIGGSIYIVSQILSAMVGVTDFSYSYAY 194

[Close]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Match: M1B0Y9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013294 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 8.300e-33
Identity = 74/106 (69.81%), Postives = 93/106 (87.74%), Query Frame = 1

		  
Query: 63  LVFSGATSIGILLMMMG---QDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVL 122
           L+  GA S+G++L +MG   +++A ALGPEGPLMEEFWEN+RRY LYALTVSTGVL+AV 
Sbjct: 73  LLVLGAVSVGVVLFLMGFDDKNQALALGPEGPLMEEFWENMRRYGLYALTVSTGVLWAVF 132

Query: 123 QPIFELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           QPI+ELLKNPISA+L++ ++GGSF+IVSQ+VSAMVGV+DFSY Y Y
Sbjct: 133 QPIYELLKNPISAILILTIMGGSFYIVSQVVSAMVGVTDFSYDYNY 178

[Close]

BLAST of Spo06953.1 vs. TAIR (Arabidopsis)
Match: AT4G16410.1 (unknown protein)

HSP 1 Score: 142.5 bits (358), Expect = 2.300e-34
Identity = 68/102 (66.67%), Postives = 90/102 (88.24%), Query Frame = 1

		  
Query: 67  GATSIGILLMM---MGQDKAWALGPEGPLMEEFWENVRRYALYALTVSTGVLYAVLQPIF 126
           G  S+G+++++   M  +KA ALGPEGPLMEEFW+NVRRY LYALTVSTG L AV +PIF
Sbjct: 84  GGVSVGLMMVLVLGMDAEKAMALGPEGPLMEEFWDNVRRYGLYALTVSTGALSAVFEPIF 143

Query: 127 ELLKNPISAVLVVIVIGGSFFIVSQIVSAMVGVSDFSYQYAY 166
           ELLKNPISA+L+++++GGSF+IVSQ+VSAM+GV++F+YQY+Y
Sbjct: 144 ELLKNPISAILILLILGGSFYIVSQVVSAMIGVNEFAYQYSY 185

The following BLAST results are available for this feature:

BLAST of Spo06953.1 vs. NCBI nr
BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
BLAST of Spo06953.1 vs. ExPASy Swiss-Prot
BLAST of Spo06953.1 vs. TAIR (Arabidopsis)

BLAST of Spo06953.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902189558\|gb\|KNA11397.1\|	1.6e-82	99.3	hypothetical protein SOVF_1356...	[more]
gi\|731350702\|ref\|XP_010686638.1\|	2.2e-47	65.1	PREDICTED: uncharacterized pro...	[more]
gi\|697103259\|ref\|XP_009605363.1\|	1.5e-35	57.8	PREDICTED: uncharacterized pro...	[more]
gi\|698439228\|ref\|XP_009758196.1\|	5.7e-35	57.1	PREDICTED: uncharacterized pro...	[more]
gi\|255563788\|ref\|XP_002522895.1\|	2.4e-33	60.0	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo06953.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QVT6_SPIOL	1.1e-82	99.3	Uncharacterized protein OS=Spi...	[more]
A0A0J8BTB7_BETVU	1.6e-47	65.1	Uncharacterized protein OS=Bet...	[more]
B9SA76_RICCO	1.7e-33	60.0	Putative uncharacterized prote...	[more]
A0A061GIF1_THECC	2.9e-33	72.1	Uncharacterized protein OS=The...	[more]
M1B0Y9_SOLTU	8.3e-33	69.8	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo06953.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo06953.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT4G16410.1	2.3e-34	66.6	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008470	Uncharacterised protein family Ycf33	PFAM	PF05421	DUF751	coord: 96..155 score: 2.5
None	No IPR available	PANTHER	PTHR36049	FAMILY NOT NAMED	coord: 44..165 score: 3.8
None	No IPR available	PANTHER	PTHR36049:SF3	SUBFAMILY NOT NAMED	coord: 44..165 score: 3.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0006598	polyamine catabolic process
biological_process	GO:0009555	pollen development
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006508	proteolysis
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0007267	cell-cell signaling
biological_process	GO:0042398	cellular modified amino acid biosynthetic process
biological_process	GO:0009698	phenylpropanoid metabolic process
biological_process	GO:0048767	root hair elongation
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006457	protein folding
biological_process	GO:0043090	amino acid import
biological_process	GO:0030007	cellular potassium ion homeostasis
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0008152	metabolic process
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0042744	hydrogen peroxide catabolic process
biological_process	GO:0006412	translation
biological_process	GO:0007165	signal transduction
biological_process	GO:0009616	virus induced gene silencing
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0048519	negative regulation of biological process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0046686	response to cadmium ion
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0010050	vegetative phase change
biological_process	GO:0010051	xylem and phloem pattern formation
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0080005	photosystem stoichiometry adjustment
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0015867	ATP transport
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0090351	seedling development
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0009651	response to salt stress
biological_process	GO:0015994	chlorophyll metabolic process
biological_process	GO:0048438	floral whorl development
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0009738	abscisic acid-activated signaling pathway
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0006749	glutathione metabolic process
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0009407	toxin catabolic process
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0006633	fatty acid biosynthetic process
biological_process	GO:0006662	glycerol ether metabolic process
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0006788	heme oxidation
biological_process	GO:0032259	methylation
biological_process	GO:0010024	phytochromobilin biosynthetic process
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0051604	protein maturation
biological_process	GO:0006364	rRNA processing
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0019760	glucosinolate metabolic process
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0019354	siroheme biosynthetic process
biological_process	GO:0010190	cytochrome b6f complex assembly
biological_process	GO:0006567	threonine catabolic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0042793	plastid transcription
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0048439	flower morphogenesis
biological_process	GO:0015866	ADP transport
biological_process	GO:0010582	floral meristem determinacy
biological_process	GO:0019438	aromatic compound biosynthetic process
biological_process	GO:0046520	sphingoid biosynthetic process
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0006570	tyrosine metabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
biological_process	GO:0043407	negative regulation of MAP kinase activity
biological_process	GO:0042761	very long-chain fatty acid biosynthetic process
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0009231	riboflavin biosynthetic process
biological_process	GO:0010155	regulation of proton transport
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0046777	protein autophosphorylation
biological_process	GO:0071840	cellular component organization or biogenesis
biological_process	GO:0006139	nucleobase-containing compound metabolic process
biological_process	GO:0051186	cofactor metabolic process
biological_process	GO:0046939	nucleotide phosphorylation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0098542	defense response to other organism
biological_process	GO:0019682	glyceraldehyde-3-phosphate metabolic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0046034	ATP metabolic process
biological_process	GO:0008299	isoprenoid biosynthetic process
biological_process	GO:0072330	monocarboxylic acid biosynthetic process
biological_process	GO:0046148	pigment biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:1901564	organonitrogen compound metabolic process
biological_process	GO:1901362	organic cyclic compound biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009790	embryo development
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0016556	mRNA modification
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0006810	transport
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009963	positive regulation of flavonoid biosynthetic process
biological_process	GO:0006612	protein targeting to membrane
biological_process	GO:0010363	regulation of plant-type hypersensitive response
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0009887	animal organ morphogenesis
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006223	uracil salvage
biological_process	GO:0044206	UMP salvage
biological_process	GO:0009850	auxin metabolic process
biological_process	GO:0032502	developmental process
biological_process	GO:0030244	cellulose biosynthetic process
biological_process	GO:0042908	xenobiotic transport
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0031969	chloroplast membrane
cellular_component	GO:0009536	plastid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0048500	signal recognition particle
cellular_component	GO:0042651	thylakoid membrane
cellular_component	GO:0009349	riboflavin synthase complex
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0005768	endosome
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0005618	cell wall
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0016020	membrane
cellular_component	GO:0016471	vacuolar proton-transporting V-type ATPase complex
cellular_component	GO:0000325	plant-type vacuole
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0008287	protein serine/threonine phosphatase complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005622	intracellular
cellular_component	GO:0048046	apoplast
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005778	peroxisomal membrane
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005774	vacuolar membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005795	Golgi stack
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0009534	chloroplast thylakoid
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0004722	protein serine/threonine phosphatase activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005215	transporter activity
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0004845	uracil phosphoribosyltransferase activity
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0015217	ADP transmembrane transporter activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0008559	xenobiotic transmembrane transporting ATPase activity
molecular_function	GO:0004602	glutathione peroxidase activity
molecular_function	GO:0008281	sulfonylurea receptor activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003935	GTP cyclohydrolase II activity
molecular_function	GO:0004392	heme oxygenase (decyclizing) activity
molecular_function	GO:0004721	phosphoprotein phosphatase activity
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0003756	protein disulfide isomerase activity
molecular_function	GO:0004871	obsolete signal transducer activity
molecular_function	GO:0005179	hormone activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0004746	riboflavin synthase activity
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0004017	adenylate kinase activity
molecular_function	GO:0043115	precorrin-2 dehydrogenase activity
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004851	uroporphyrin-III C-methyltransferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0045703	ketoreductase activity
molecular_function	GO:0018454	acetoacetyl-CoA reductase activity
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004725	protein tyrosine phosphatase activity
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0008686	3,4-dihydroxy-2-butanone-4-phosphate synthase activity
molecular_function	GO:0005347	ATP transmembrane transporter activity
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo02696	0.99	Barchart \| Table
Spo23712	0.87	Barchart \| Table
Spo25196	0.84	Barchart \| Table
Spo14914	0.83	Barchart \| Table
Spo20106	0.83	Barchart \| Table
Spo09798	0.82	Barchart \| Table
Spo11688	0.82	Barchart \| Table
Spo11524	0.82	Barchart \| Table
Spo09769	0.81	Barchart \| Table
Spo09387	0.81	Barchart \| Table
Spo26697	0.81	Barchart \| Table
Spo10284	0.80	Barchart \| Table
Spo24675	0.80	Barchart \| Table
Spo09554	0.80	Barchart \| Table
Spo02918	0.80	Barchart \| Table
Spo04653	0.80	Barchart \| Table
Spo23384	0.80	Barchart \| Table
Spo27364	0.79	Barchart \| Table
Spo18578	0.79	Barchart \| Table
Spo11417	0.78	Barchart \| Table
Spo19938	0.78	Barchart \| Table
Spo19288	0.78	Barchart \| Table
Spo22999	0.78	Barchart \| Table
Spo00872	0.78	Barchart \| Table
Spo00256	0.78	Barchart \| Table
Spo09335	0.78	Barchart \| Table
Spo22811	0.77	Barchart \| Table
Spo02573	0.77	Barchart \| Table
Spo01252	0.77	Barchart \| Table
Spo21660	0.77	Barchart \| Table
Spo15461	0.77	Barchart \| Table
Spo24325	0.77	Barchart \| Table
Spo21144	0.77	Barchart \| Table
Spo08478	0.77	Barchart \| Table
Spo16996	0.77	Barchart \| Table
Spo21446	0.76	Barchart \| Table
Spo01054	0.76	Barchart \| Table
Spo00214	0.76	Barchart \| Table
Spo06637	0.76	Barchart \| Table
Spo23332	0.76	Barchart \| Table
Spo25985	0.76	Barchart \| Table
Spo04200	0.76	Barchart \| Table
Spo05307	0.76	Barchart \| Table
Spo14256	0.76	Barchart \| Table
Spo22451	0.76	Barchart \| Table
Spo16643	0.76	Barchart \| Table
Spo01925	0.76	Barchart \| Table
Spo21808	0.75	Barchart \| Table
Spo20458	0.75	Barchart \| Table
Spo08114	0.75	Barchart \| Table
Spo08935	0.75	Barchart \| Table
Spo10491	0.75	Barchart \| Table
Spo22683	0.75	Barchart \| Table
Spo13981	0.75	Barchart \| Table
Spo09428	0.74	Barchart \| Table
Spo08997	0.74	Barchart \| Table
Spo19018	0.74	Barchart \| Table
Spo07915	0.74	Barchart \| Table
Spo12228	0.74	Barchart \| Table
Spo23154	0.74	Barchart \| Table
Spo25717	0.74	Barchart \| Table
Spo25008	0.74	Barchart \| Table
Spo10835	0.74	Barchart \| Table
Spo24046	0.74	Barchart \| Table
Spo22583	0.74	Barchart \| Table
Spo06278	0.74	Barchart \| Table
Spo24630	0.74	Barchart \| Table
Spo24016	0.74	Barchart \| Table
Spo21215	0.73	Barchart \| Table
Spo23857	0.73	Barchart \| Table
Spo02232	0.73	Barchart \| Table
Spo01983	0.73	Barchart \| Table
Spo06453	0.73	Barchart \| Table
Spo21155	0.73	Barchart \| Table
Spo17578	0.73	Barchart \| Table
Spo19341	0.73	Barchart \| Table
Spo16695	0.73	Barchart \| Table
Spo06170	0.73	Barchart \| Table
Spo18080	0.73	Barchart \| Table
Spo08407	0.73	Barchart \| Table
Spo03906	0.73	Barchart \| Table
Spo20912	0.73	Barchart \| Table
Spo27081	0.73	Barchart \| Table
Spo25817	0.73	Barchart \| Table
Spo03572	0.73	Barchart \| Table
Spo03362	0.73	Barchart \| Table
Spo06004	0.73	Barchart \| Table
Spo24081	0.73	Barchart \| Table
Spo18958	0.73	Barchart \| Table
Spo16955	0.73	Barchart \| Table
Spo23558	0.72	Barchart \| Table
Spo11509	0.72	Barchart \| Table
Spo28265	0.72	Barchart \| Table
Spo17577	0.72	Barchart \| Table
Spo23076	0.72	Barchart \| Table
Spo03195	0.72	Barchart \| Table
Spo13783	0.72	Barchart \| Table
Spo26355	0.72	Barchart \| Table
Spo09777	0.72	Barchart \| Table
Spo13281	0.72	Barchart \| Table
Spo23382	0.72	Barchart \| Table
Spo13714	0.72	Barchart \| Table
Spo02648	0.72	Barchart \| Table
Spo26975	0.72	Barchart \| Table
Spo05032	0.72	Barchart \| Table
Spo12370	0.72	Barchart \| Table
Spo19431	0.72	Barchart \| Table
Spo04433	0.72	Barchart \| Table
Spo09232	0.72	Barchart \| Table
Spo16240	0.72	Barchart \| Table
Spo24425	0.72	Barchart \| Table
Spo12302	0.72	Barchart \| Table
Spo09381	0.72	Barchart \| Table
Spo26610	0.71	Barchart \| Table
Spo00405	0.71	Barchart \| Table
Spo06398	0.71	Barchart \| Table
Spo07733	0.71	Barchart \| Table
Spo25178	0.71	Barchart \| Table
Spo24736	0.71	Barchart \| Table
Spo03896	0.71	Barchart \| Table
Spo09267	0.71	Barchart \| Table
Spo03592	0.71	Barchart \| Table
Spo05915	0.71	Barchart \| Table
Spo00743	0.71	Barchart \| Table
Spo12301	0.71	Barchart \| Table
Spo12354	0.71	Barchart \| Table
Spo23318	0.71	Barchart \| Table
Spo13490	0.71	Barchart \| Table
Spo01923	0.71	Barchart \| Table
Spo01281	0.71	Barchart \| Table
Spo14938	0.71	Barchart \| Table
Spo15390	0.71	Barchart \| Table
Spo21254	0.71	Barchart \| Table
Spo19836	0.71	Barchart \| Table
Spo00205	0.70	Barchart \| Table
Spo10871	0.70	Barchart \| Table
Spo05942	0.70	Barchart \| Table
Spo04123	0.70	Barchart \| Table
Spo25987	0.70	Barchart \| Table
Spo09752	0.70	Barchart \| Table
Spo24331	0.70	Barchart \| Table
Spo05402	0.70	Barchart \| Table
Spo25573	0.70	Barchart \| Table
Spo14630	0.70	Barchart \| Table
Spo16213	0.70	Barchart \| Table
Spo05012	0.70	Barchart \| Table
Spo12682	0.70	Barchart \| Table
Spo11196	0.70	Barchart \| Table
Spo18111	0.70	Barchart \| Table
Spo00667	0.70	Barchart \| Table
Spo05235	0.70	Barchart \| Table
Spo16293	0.70	Barchart \| Table
Spo13180	0.70	Barchart \| Table
Spo16960	0.70	Barchart \| Table
Spo15222	0.70	Barchart \| Table
Spo19217	0.69	Barchart \| Table
Spo26853	0.69	Barchart \| Table
Spo05651	0.69	Barchart \| Table
Spo26852	0.69	Barchart \| Table
Spo00677	0.69	Barchart \| Table
Spo18285	0.69	Barchart \| Table
Spo09536	0.69	Barchart \| Table
Spo14350	0.69	Barchart \| Table
Spo05125	0.69	Barchart \| Table
Spo20849	0.69	Barchart \| Table
Spo27346	0.69	Barchart \| Table
Spo30004	0.69	Barchart \| Table
Spo17740	0.69	Barchart \| Table
Spo15880	0.69	Barchart \| Table
Spo25659	0.69	Barchart \| Table
Spo23549	0.69	Barchart \| Table
Spo02106	0.69	Barchart \| Table
Spo23800	0.69	Barchart \| Table
Spo26986	0.69	Barchart \| Table
Spo02480	0.69	Barchart \| Table
Spo10898	0.68	Barchart \| Table
Spo00498	0.68	Barchart \| Table
Spo01437	0.68	Barchart \| Table
Spo03390	0.68	Barchart \| Table
Spo06293	0.68	Barchart \| Table
Spo07548	0.68	Barchart \| Table
Spo08404	0.68	Barchart \| Table
Spo09149	0.68	Barchart \| Table
Spo10235	0.68	Barchart \| Table
Spo10864	0.68	Barchart \| Table
Spo00079	0.68	Barchart \| Table
Spo11431	0.68	Barchart \| Table
Spo12823	0.68	Barchart \| Table
Spo13209	0.68	Barchart \| Table
Spo13891	0.68	Barchart \| Table
Spo14667	0.68	Barchart \| Table
Spo15317	0.68	Barchart \| Table
Spo15843	0.68	Barchart \| Table
Spo18104	0.68	Barchart \| Table
Spo18148	0.68	Barchart \| Table
Spo20869	0.68	Barchart \| Table
Spo21383	0.68	Barchart \| Table
Spo22276	0.68	Barchart \| Table
Spo24214	0.68	Barchart \| Table
Spo24324	0.68	Barchart \| Table
Spo24913	0.68	Barchart \| Table
Spo25692	0.68	Barchart \| Table
Spo25804	0.68	Barchart \| Table
Spo26430	0.68	Barchart \| Table
Spo26673	0.68	Barchart \| Table
Spo10525	0.67	Barchart \| Table
Spo26423	0.67	Barchart \| Table
Spo01628	0.67	Barchart \| Table
Spo27163	0.67	Barchart \| Table
Spo17860	0.67	Barchart \| Table
Spo02981	0.67	Barchart \| Table
Spo20930	0.67	Barchart \| Table
Spo24590	0.67	Barchart \| Table
Spo08824	0.67	Barchart \| Table
Spo06164	0.67	Barchart \| Table
Spo24732	0.67	Barchart \| Table
Spo22207	0.67	Barchart \| Table
Spo06403	0.67	Barchart \| Table
Spo22261	0.67	Barchart \| Table
Spo20770	0.67	Barchart \| Table
Spo02665	0.67	Barchart \| Table
Spo14779	0.67	Barchart \| Table
Spo07149	0.67	Barchart \| Table
Spo06655	0.67	Barchart \| Table
Spo14403	0.67	Barchart \| Table
Spo16115	0.67	Barchart \| Table
Spo13634	0.67	Barchart \| Table
Spo02890	0.67	Barchart \| Table
Spo16079	0.67	Barchart \| Table
Spo17612	0.67	Barchart \| Table
Spo13171	0.67	Barchart \| Table
Spo23327	0.67	Barchart \| Table
Spo02649	0.67	Barchart \| Table
Spo15499	0.67	Barchart \| Table
Spo16797	0.67	Barchart \| Table
Spo12875	0.67	Barchart \| Table
Spo17090	0.67	Barchart \| Table
Spo23531	0.67	Barchart \| Table
Spo12609	0.67	Barchart \| Table
Spo11951	0.67	Barchart \| Table
Spo19372	0.67	Barchart \| Table
Spo11668	0.67	Barchart \| Table
Spo23853	0.67	Barchart \| Table
Spo28267	0.67	Barchart \| Table
Spo11317	0.67	Barchart \| Table
Spo23518	0.66	Barchart \| Table
Spo02513	0.66	Barchart \| Table
Spo21635	0.66	Barchart \| Table
Spo22052	0.66	Barchart \| Table
Spo01954	0.66	Barchart \| Table
Spo13963	0.66	Barchart \| Table
Spo13393	0.66	Barchart \| Table
Spo13210	0.66	Barchart \| Table
Spo13161	0.66	Barchart \| Table
Spo23363	0.66	Barchart \| Table
Spo12976	0.66	Barchart \| Table
Spo11739	0.66	Barchart \| Table
Spo09671	0.66	Barchart \| Table
Spo09317	0.66	Barchart \| Table
Spo08645	0.66	Barchart \| Table
Spo08351	0.66	Barchart \| Table
Spo08197	0.66	Barchart \| Table
Spo08097	0.66	Barchart \| Table
Spo25405	0.66	Barchart \| Table
Spo01068	0.66	Barchart \| Table
Spo06362	0.66	Barchart \| Table
Spo02979	0.66	Barchart \| Table
Spo17729	0.66	Barchart \| Table
Spo20050	0.66	Barchart \| Table
Spo17337	0.66	Barchart \| Table
Spo17320	0.66	Barchart \| Table
Spo10092	0.65	Barchart \| Table
Spo11558	0.65	Barchart \| Table
Spo15995	0.65	Barchart \| Table
Spo00478	0.65	Barchart \| Table
Spo13583	0.65	Barchart \| Table
Spo22436	0.65	Barchart \| Table
Spo18471	0.65	Barchart \| Table
Spo15014	0.65	Barchart \| Table
Spo15302	0.65	Barchart \| Table
Spo01104	0.65	Barchart \| Table
Spo01401	0.65	Barchart \| Table
Spo17859	0.65	Barchart \| Table
Spo16361	0.65	Barchart \| Table
Spo06335	0.65	Barchart \| Table
Spo08713	0.65	Barchart \| Table
Spo09434	0.65	Barchart \| Table