Spo06972 (gene)

Overview
NameSpo06972
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_02466 : 18102 .. 22041 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGTGTGTTTGCATATCATGCATGACACAAAATATGACAGTAAATTCTTGGAGAATATAACTAGGGGTTTAGTATGTACGTAGTAGCTATTTTACTGTAAGGCATAAAGTTAGAATATTGATGAATAGTATGATTGCTCAAGTGCAGTGAGGGAAATGGAATGCTTATGAAATATGAATCCATCCGCGAATAATGGTATTGTGTGGTCACCACTACCAGACGTCATCTCGTTAATGGTGCCTTTTTTTTTTTTTTTAATTTTAGTTTTTAATTTGTGATATTAAAGCTGTTGGTGAGTTTGTGAGTGGTAAATGGTGATGTCCATATGACATGCGATTGTCACCATCCGCCTTTGCCATCTTTTTGGGGGTGGATTTATGGATAAGCAAACTTTGCTTGTGGCCTAATTATTAATTTTGCCCATTATGCTATATTTATTTTAATCTACTCTGTTTAACATTTTAACTTATTTCAGACAAAATCAGTGATCGTATACTTGTACCTTTACCTTCTATTTCAGGGTGTTTAAAATAAATCGACAGCTATACAATAGCTTATGAAAGAGTTTAAAATGTTGCAGGGTTATTAGTAGGCGCGTGGAGCTTAAAATGTTACCTTTGTTAACGACATAACGCCGTTTCCTTTACCTTGTTGACTCACTCCCATCTTTCCTTTTTTTTTTTAAAAAGAAAATATAAACTTGTGTATTTTAAGACACAGCTGTGCCATGGAATATATCAACAGGTGGCACGTTGTTGTATGTGTGACCCACCATAAGCAATCATGTATTCTCATGACACGTGGTGGCGTGGCAACAAACTTTACAATGATTCTACTACTTTTTCTAATTTCTAGTTTCTACTCCCTCCCTTTTACAACACTCATCTCTAGTACGGAGTACGGAGTATTTGGTGTAATTTATAGGAAAATTTGGTAATATTAATCCAACCTTTGGTCGATTTTCTTTTATTAAGCCCACCTATGACATATTTTTTAATAATCCCACCTTTACCACCCAACGACTTTTATTGGGCCCAACACGTCATAAACCTATTGTAGGCGATAATATGTCCCTACGTGGAAGTACTCTCTCTCGATATATTCAGTCATCATCATCAATTCATCACCAATCTCGATGATTTTTTCACCGGTTATCGGTCACTTAAGCCCAATAAAAGTCGTTGGGTAGTAAAGGTGGAATTATTAAAAAATATGTCGTAGGTGAGATTAATAAAAGAAAACCGGCCAAAGGTTGAATTAATATTACCAAATTTTCCTAATTTATATTGTACAACACTCGTCTTAAAGAAGAGTTCCTTTATTAATTATAATTATAATTATAATTATAATTTAATGTACCATACAACTTAGTGAGCATATGTATCAAATCAGCTTTTAAAATGATGTTGATCATGTTTTATTTGCATTTGCATCAACAAGTAACGAATTAATTAGGATTCAAGTGATCGATTAGAATTATTTGCGTTTGCATCAATAAGTAACTTCACTACATCCGCAATATATGAATCATTTTTCATTTTAGCATTGTTCATCAATTAACTTTGGCAATCTTTTTTTCAGCATTATGTAAAAAAAAAAACATAGTCAAGTGAAGATCATGTTAAATTTATATAAATGCATTGATTTCAAATGTCAATTTTTTTTATAATTTTTATTTATATACATTTAGAGATATTAAAAAACGTGTTAAAACACGTGTAAAAAGAAATGTTGCATGTATTGTAGAACGAGAGTAGTACTACGGGGTACTCCATAATTATGTTGTTGCTCACGACATGCATTTTAACGCTGTTAAAGATGCTCTTTAATTATACTATTAAATACGGTGTATTGTTTTTTCTTCTTTCTATAACCTTGTGGATTTCTTTTCCATTTCGTTTCCTCTCTCATTTCTAACAATAAAGTATTACAAATTAAAACCTATAAATCACACGAGTACCTATAGATACCAACATGCAAGTAATGTATGTGTATTATTATGTACTCCGTACAACACATCACCCCCATATAGTATATACTTAAAAGGGTAATCTTAACATAATCATCAAAAGTCAGAATATAACACATACACAGTTCTAAAATAGTTTCTTACATTATAATAAGTTTGCAGATGAGGCAATTTCTCCAAAACATAAGCTGATTCAATGGTACGTAGGTATTACGGAGTAGTTAAAATAAAATGAAACAAGGCTGAAATTTCCTTAATAGAGACAGAAAGAGCAAAGAAGAACAACTCTTTCATTTTGCGTGCATACCAAATAAAATAAACCCAAAATAATAATAATAAATAAAAATAAATAATAATGACTCATTCTCCCCACGACCAAGTGATCCACCCCTCAATTTATTGAGCGAGGTGGAGGATTAATATGAATTAAGTATTTCTGAATACAGTATTTCATGTGTTGTTTTTTTTTAATGACCATTTAACTTATTCATATAATCTACTTTGACATTAATTAGATATGCCTAAAAAAAAATATAGTGATCTTGTTATAATAGTTTAACTACTGTGTATCTTGGGCGATGTTCCAGGATTCTACTTTAAATAACATAATTTGATTTTAGCATGAATAATTGTTACCTTGTACTATTTTCTCTTCTTCAAAATTATTTGGTATCCAATTAAAATGTTTTGTCCATCACGATCTAGTGAAAGTATAAAATAATTTTAAGAGTTATTACATAGTACTCGTAAGTCGTAAATAAAAACATTTATTATTCCAAGTTATATATCTTTATTTAGAGTAAAAATCATATCAAGTAGTTGGCCAAGATGGTAAGATTTCTACCTCATATCTTGGTGGTCTCATGTTTCAAGCTTTGCCACGTGAAATTTTTGTATGTATATTCATATTTCTTGATGACGTGTCATGTTTTCAGTAAAAGAGAGTTCCACATGCCATATGTTAATGATTATTGTTGGGTAATAAAGGTGGGATTATTAAAAAATATGTCGTAGGTGGGCTTAATAAAAGAAAATCGGTCAAAGGTTGGATTAATATTACCAAATTTTCCAATGATTAAAATATTGCATTGATAAATATGATAAAAAAAATGATGTCTTTTAAACGGAAAGTATTCAATTACCCCTAACCCCTCATTTGTTTGTTTCATCATTATTTGATTACCTTAGCAGTAAGTACTCCGTAGTAGTTCTCCGATGTTGGTGGTGTTGTCTCTCTTAAGGATGCAGAATACCCAAGTCTACTGAATTCCTCCCACTTCTCTTTTCCCCAATTCCTCATTTTCAATTTCCTGCTTTCTTCACTCATCACTCCCACCCTTACTTTTTGTAAGTTTTTATCTCTATCTCTTGATTTTTTTTTGAATCACAGTACTAAATTACTTGTGCTCCTTTCGATCTCTAAATTTATCTTTATAGTTTGTTTCTTTGATCAATTTCTGTTCTTAATATGCTTCCTTTATCGTTGTATTAACTTGAAACATGCTTCTTTCTGTTCGGATTATGTTAATTCAAATTCAATCCAATGATAATTCATGTAATTTCAACTATTCTGATGTCTCCTCCTACCTGGCTTAATTATCTCACCAAAAATATGATTAGCTGTTTCTGTTTTGTGATTTATTCTCATCTTTTGTAAATTTTATGTGTAGCAGCTTAGGGTTCAATCATATAGACTTTCATGTTTAACGGTTTGCTTCTTGGAAATTTTAATTATGTCATTTTTATGTTATCCATTTGATATGTGACATATTTAATTTATATCTCAATTCCCATATGCTTGTGCTGCACATCCAACTTTCTTTCTACTACCTTTTTCCAAAAAGCTACTGTTTTTGACGTTAATATAGGATTTTACCTTGACTTTTGCAGGGCATAATTTTGTGAATTGCTTTAATTTAATCCTGATCCTACAATTTGCAGATCTTGAGCTTAGTAATATAGATTAA

mRNA sequence

ATGTTTGTGTGTTTGCATATCATGCATGACACAAAATATGACAGTAAATTCTTGGAGAATATAACTAGGGGTTTATTCTCCGATGTTGGTGGTGTTGTCTCTCTTAAGGATGCAGAATACCCAAGTCTACTGAATTCCTCCCACTTCTCTTTTCCCCAATTCCTCATTTTCAATTTCCTGCTTTCTTCACTCATCACTCCCACCCTTACTTTTTATCTTGAGCTTAGTAATATAGATTAA

Coding sequence (CDS)

ATGTTTGTGTGTTTGCATATCATGCATGACACAAAATATGACAGTAAATTCTTGGAGAATATAACTAGGGGTTTATTCTCCGATGTTGGTGGTGTTGTCTCTCTTAAGGATGCAGAATACCCAAGTCTACTGAATTCCTCCCACTTCTCTTTTCCCCAATTCCTCATTTTCAATTTCCTGCTTTCTTCACTCATCACTCCCACCCTTACTTTTTATCTTGAGCTTAGTAATATAGATTAA

Protein sequence

MFVCLHIMHDTKYDSKFLENITRGLFSDVGGVVSLKDAEYPSLLNSSHFSFPQFLIFNFLLSSLITPTLTFYLELSNID
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo06972.1Spo06972.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo06972.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06972.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06972.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo06972.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
biological_process GO:0042908 xenobiotic transport
biological_process GO:0009231 riboflavin biosynthetic process
biological_process GO:0016310 phosphorylation
biological_process GO:0045892 negative regulation of transcription, DNA-templated
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0019375 galactolipid biosynthetic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0016036 cellular response to phosphate starvation
biological_process GO:0008612 peptidyl-lysine modification to peptidyl-hypusine
biological_process GO:0050983 obsolete deoxyhypusine biosynthetic process from spermidine
biological_process GO:0009553 embryo sac development
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0007165 signal transduction
biological_process GO:0030007 cellular potassium ion homeostasis
biological_process GO:0050896 response to stimulus
biological_process GO:0043090 amino acid import
biological_process GO:0009651 response to salt stress
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0000911 cytokinesis by cell plate formation
cellular_component GO:0005622 intracellular
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0044425 membrane part
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0000325 plant-type vacuole
molecular_function GO:0034038 deoxyhypusine synthase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016746 transferase activity, transferring acyl groups
molecular_function GO:0008281 sulfonylurea receptor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003919 FMN adenylyltransferase activity
molecular_function GO:0008967 phosphoglycolate phosphatase activity
molecular_function GO:0008531 riboflavin kinase activity
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo029320.80Barchart | Table
Spo026650.77Barchart | Table
Spo168010.73Barchart | Table
Spo171990.72Barchart | Table
Spo021920.72Barchart | Table
Spo043830.72Barchart | Table
Spo206950.72Barchart | Table
Spo211550.71Barchart | Table
Spo014260.71Barchart | Table
Spo083510.71Barchart | Table
Spo086540.71Barchart | Table
Spo193930.71Barchart | Table
Spo282670.70Barchart | Table
Spo039010.70Barchart | Table
Spo050730.70Barchart | Table
Spo054960.70Barchart | Table
Spo122400.70Barchart | Table
Spo156390.70Barchart | Table
Spo199380.70Barchart | Table
Spo212150.70Barchart | Table
Spo240460.70Barchart | Table
Spo251590.70Barchart | Table
Spo280580.70Barchart | Table
Spo244250.69Barchart | Table
Spo017570.69Barchart | Table
Spo128430.69Barchart | Table
Spo059150.69Barchart | Table
Spo233270.69Barchart | Table
Spo153170.69Barchart | Table
Spo087890.68Barchart | Table
Spo263050.68Barchart | Table
Spo007520.68Barchart | Table
Spo123250.68Barchart | Table
Spo089350.68Barchart | Table
Spo078290.68Barchart | Table
Spo135300.68Barchart | Table
Spo238140.68Barchart | Table
Spo142250.68Barchart | Table
Spo149110.68Barchart | Table
Spo261170.68Barchart | Table
Spo160350.68Barchart | Table
Spo228110.68Barchart | Table
Spo168050.68Barchart | Table
Spo256390.68Barchart | Table
Spo217480.68Barchart | Table
Spo129650.67Barchart | Table
Spo095540.67Barchart | Table
Spo097170.67Barchart | Table
Spo100920.67Barchart | Table
Spo112850.67Barchart | Table
Spo119230.67Barchart | Table
Spo129990.67Barchart | Table
Spo262670.67Barchart | Table
Spo162400.67Barchart | Table
Spo037570.67Barchart | Table
Spo031990.67Barchart | Table
Spo205880.67Barchart | Table
Spo208690.67Barchart | Table
Spo238530.67Barchart | Table
Spo268870.67Barchart | Table
Spo249250.67Barchart | Table
Spo067660.67Barchart | Table
Spo054310.67Barchart | Table
Spo051350.67Barchart | Table
Spo087130.67Barchart | Table
Spo160790.66Barchart | Table
Spo194380.66Barchart | Table
Spo259870.66Barchart | Table
Spo089910.66Barchart | Table
Spo268180.66Barchart | Table
Spo131840.66Barchart | Table
Spo246230.66Barchart | Table
Spo230440.66Barchart | Table
Spo092020.66Barchart | Table
Spo251070.66Barchart | Table
Spo233320.66Barchart | Table
Spo140870.66Barchart | Table
Spo194820.66Barchart | Table
Spo045930.65Barchart | Table
Spo093350.65Barchart | Table
Spo099350.65Barchart | Table
Spo094700.65Barchart | Table
Spo258530.65Barchart | Table
Spo008950.65Barchart | Table
Spo213980.65Barchart | Table
Spo179080.65Barchart | Table