Spo07009 (gene)

Overview
NameSpo07009
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr5 : 23905247 .. 23906081 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGGTTGTCAGTAAGTGGAGTTACTTTCTGCATATTACACGGTTCAATACAAATAAATAACGTCTGCTACCGCAGCGAGCTGAGGTCTCACAGAATAAGTTACAAAAAAGTTAGCAGTTATATTTCATAAGTTCATAGTTCAGCTGAATAAGAACCACCAAAATCTTACGTTGTACTTGTAGCAGTGCTTTTGTCACGCATAAATAATCAGTTGCTTGTTAACCATACATCCGATATGAATGAATAATTTTTTTTTTTTTGTTGCTGTTTCTACACTTTTGCCAATAAAAGCTCGTGCCTTGACTTAACGTGCTTTTCATCGTCTTTAACTTATAAAAGGGAGGGAAGCTTTTAACTAATTAACAAAGGTTAGAAGAAGGTAGAATGTTTTTACGCTGGAGTTTCTGCTTTGGTTCAGAAAAATCATTCAGTAAATACTGCAGTGATTCAAGCTCCTGGAAACCAGGAATAGGAGTGGGTAAACTGCTTCACTCTGTATAACTGTGTCCAGAAGTAACGTTCTTTTGGCTGCATATTTGATTCAAAATTGCTGCAATTGCTCTGATTGAAGGTACTTTCTTGCAGCTCAGAAAATGAGGTCTAGGGGAGACCACCCATCATCCACTTTGTTCTCTACTCCAAGCATTTCTTCTAGAGGTCTACTTCAATGTTATCCCGATCAATAATAGCTTTATGTAGTATTTCTTCCGTTTTTAAATATTCGCAACGTTTGGACTTTTTACGCTATTAACTATTCTGTATTCACATATTATATTTTGACTATTTTTGGTGACTTATGTAAGATAAATTATACTCATGTAAGATAAATTTTG

mRNA sequence

ATGTGGTTGTCAGTAAGTGGAGTTACTTTCTGCATATTACACGGTTCAATACAAATAAATAACGTCTGCTACCGCAGCGAGCTGAGGTCTCACAGAATAAGTTACAAAAAAGTTAGCACTCAGAAAATGAGGTCTAGGGGAGACCACCCATCATCCACTTTGTTCTCTACTCCAAGCATTTCTTCTAGAGGTCTACTTCAATGTTATCCCGATCAATAATAGCTTTATGTAGTATTTCTTCCGTTTTTAAATATTCGCAACGTTTGGACTTTTTACGCTATTAACTATTCTGTATTCACATATTATATTTTGACTATTTTTGGTGACTTATGTAAGATAAATTATACTCATGTAAGATAAATTTTG

Coding sequence (CDS)

ATGTGGTTGTCAGTAAGTGGAGTTACTTTCTGCATATTACACGGTTCAATACAAATAAATAACGTCTGCTACCGCAGCGAGCTGAGGTCTCACAGAATAAGTTACAAAAAAGTTAGCACTCAGAAAATGAGGTCTAGGGGAGACCACCCATCATCCACTTTGTTCTCTACTCCAAGCATTTCTTCTAGAGGTCTACTTCAATGTTATCCCGATCAATAA

Protein sequence

MWLSVSGVTFCILHGSIQINNVCYRSELRSHRISYKKVSTQKMRSRGDHPSSTLFSTPSISSRGLLQCYPDQ
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07009.1Spo07009.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo07009.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07009.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07009.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07009.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009790 embryo development
biological_process GO:0005978 glycogen biosynthetic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0009414 response to water deprivation
cellular_component GO:0009501 amyloplast
cellular_component GO:0009507 chloroplast
cellular_component GO:0005829 cytosol
molecular_function GO:0003844 1,4-alpha-glucan branching enzyme activity
molecular_function GO:0043169 cation binding
molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function GO:0008184 glycogen phosphorylase activity
molecular_function GO:0030170 pyridoxal phosphate binding
RNA-Seq Expression