Spo07168 (gene)

Overview
NameSpo07168
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_03660 : 7134 .. 7668 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATTATGTTGAAACTTGTTATGGTGATTCGTTTGTTCCTCTCTACCGATTGCATCTGAATGAATTGCTTATTCGCTTGTCTGAGTTTCTGGTGAAAATTCTGTAGCTTGAAATTAAGTGATTTTTATTGATTAATCTGTATGCAGTTGGGAGGTGCTTTGGTTTGAGCATGCAAAAGTACATTATCAAATGTATAGAAGGAAAGGGATCATCAAAGGAAGATAGAAACGGGAAACAATCAACCTTTAACATTGTCAAAAATGCACAGTTATTATTTTCTGGACTATCTAATTATCAAATTAGCATGCCTTCTCATTCCGCTCTGGTGGAAAGTGAATAATAATACCAGATGGTGTACACTTCTTTTACTTTTAATACTAGTACGTACTGTAGTACTGTATACGAAGTACATTTTATGATATACAGTACTCTGTGTTCAATCTTTAGGGTTACAAGATTACTTCCTCCTCTCTAAAATTGTTGCAACACTTTGATTTTTGCACTATTCATAAAATCTACTTTATTTATTTTCG

mRNA sequence

ATGTATTATGTTGAAACTTGTTATGTTGGGAGGTGCTTTGGTTTGAGCATGCAAAAGTACATTATCAAATGTATAGAAGGAAAGGGATCATCAAAGGAAGATAGAAACGGGAAACAATCAACCTTTAACATTGTCAAAAATGCACAGTTATTATTTTCTGGACTATCTAATTATCAAATTAGCATGCCTTCTCATTCCGCTCTGGTGGAAAGTGAATAATAATACCAGATGGTGTACACTTCTTTTACTTTTAATACTAGTACGTACTGTAGTACTGTATACGAAGTACATTTTATGATATACAGTACTCTGTGTTCAATCTTTAGGGTTACAAGATTACTTCCTCCTCTCTAAAATTGTTGCAACACTTTGATTTTTGCACTATTCATAAAATCTACTTTATTTATTTTCG

Coding sequence (CDS)

ATGTATTATGTTGAAACTTGTTATGTTGGGAGGTGCTTTGGTTTGAGCATGCAAAAGTACATTATCAAATGTATAGAAGGAAAGGGATCATCAAAGGAAGATAGAAACGGGAAACAATCAACCTTTAACATTGTCAAAAATGCACAGTTATTATTTTCTGGACTATCTAATTATCAAATTAGCATGCCTTCTCATTCCGCTCTGGTGGAAAGTGAATAA

Protein sequence

MYYVETCYVGRCFGLSMQKYIIKCIEGKGSSKEDRNGKQSTFNIVKNAQLLFSGLSNYQISMPSHSALVESE
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo07168.1Spo07168.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo07168.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07168.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07168.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo07168.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016556 mRNA modification
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009555 pollen development
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0010050 vegetative phase change
biological_process GO:0046686 response to cadmium ion
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0048519 negative regulation of biological process
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0048439 flower morphogenesis
biological_process GO:0048438 floral whorl development
biological_process GO:0010582 floral meristem determinacy
biological_process GO:0010158 abaxial cell fate specification
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0030244 cellulose biosynthetic process
biological_process GO:0009850 auxin metabolic process
biological_process GO:0009887 animal organ morphogenesis
biological_process GO:0009734 auxin-activated signaling pathway
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005795 Golgi stack
cellular_component GO:0009536 plastid
cellular_component GO:0005737 cytoplasm
molecular_function GO:0003677 DNA binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005515 protein binding
RNA-Seq Expression