Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATAGGTTGTAATTTGTCCTTCTTTTAATGAACTCCTTATAAAAAAAATAAAAATGAATAAATACTACACCTTTATGTCCACGTGGATCGCGTGTCCTTCCTCCTCCTTCAAACACTTAGCAAGTAAGGCATCCGATCGTGCTCGTAGTCAAAAACCAACATCTCCCACCTACGAAGAAGAAAGAGAAAATCAAAATCAGGAGAAAATGGGCTTACAATGGATGATCCTCACCTACGCAGTTGCAGCAGAGGCCGCCATTTTTCTTCTCATCTCACTTCCTTCACCAAAGGTTCTCAAAACTCGTCTGGTTTCCTTAATCTCTCTTATCCTTCAGCCGTTAATGTTCATCGTCCCTTTCGCCGCTTTTCAGCTTCTCGGTATCACCTCTTTCTCTCTCCCCTTCCCCATTTCTTTTCTCGTTTGCGATGTCGAATTCAATTTTCTATTTTGATTTTCAGATATTTACTGGAAGTATGAGCACCGATTGACGTGTACTTCTGAGATCTGTACTGCCACTGAAAGAGATCGCTATGAGAAATCGGTAATTTTTGTTTTGTTGTTGATTGTCTAGGGTTTACTTACGTGTCTTAATTTTGTGCAATTTAATTTCTAATTTTTGTTGGATTTATTATTATCATGATTATTTACTGTCGGCAGATTAATTGCTCCTATCATCCAATGTTTAGGATTAATGGGGTGGTTTAATTGCCATAGTTTTCCTTTTGATATTGTTGTTTGTTGGAGTTAATTGCTCCAAACTTGACTTATTTATAACATTGTTAATCAGAAAAGCTTGGTGTTGATTCCCCGGTAGTTATAATGATGGATTTGAGGTTTTGTTATGGCGGTGATGATACTGCATTGTTGAAAGACTCAAAATAGAGCGGAGAGGCTGAGCCTAGGGGTATTATTAGGGTCTTAACAATATATTTGGCACTCCATTTGTTAGTTGCAATATTAGAGTCAATTTTCATTAGTTTTATAGAGCCGAATTTGTTGCGAGTGAGCCATTTATACGAAGGCATGTTACTAGTTGTGACTGGCTGTGTGTGAAGGACTGAAGGTGCTTCTTTGTTCCTTTGTTCATCAAGGATTGATAGTAATAAGATTGAGATGTTATCCCCGATTGAATAATGTGTAGGATTACTAGGATATCAGTTTTCCAGATTTGAAGAAGAAGCTGCAAATTTGATAAATGAATATAAACTTGGCTATGGTCCTCTACCCACTTTCTTGTGGCCTATTTAGCTATCTCGATTCATGAAAAATAACCTTTGATTTTGAAGATTTTGTGTTGCTGAGGAGTATTAAGTCATCATATTTTCTATTTTAGTATTGTTTTTGGGAGGTACATTCCTTGTGTTGCTGAATTTTGGCCTTGTTGCAAGGTGTGTGATTAGTATTTTATTTTAAGCTATTCGACGTCTATTTTCTCAACTCGGTCCCCGTCTTTGCCCAATTTTTTTGTCTTTTCCCTTCAAAATGGCTGTTCTATCTCCTATTTTCTTGTCTGTCTTTCAGCTTATTCCTTTTTAATATTCCCTCCATTTCCCTATTCTAACCTTGGTCTCGCGTATATTCATAAATTCATCTCTTCTCTCAAAAGGAGTCAAAACCTACTACCTCTCCTCAGTCTTTGTCAAGCTGGTATCAGGCAGTCAAGGACTACTACACTAACCATGATGTTGCTAGTGTCTTACAAAAAATGAATAGGTATATGAGGATGCTATGTTTTAGAGAATTTCTGTCAAGGAAAAGGAATTTTCTTGCTAAGCGTGGGATAATTGTAGCGGATACAAAAGGATAAGTTTGAGGAATGTAAAGTAGTTTTATGTTGAAGTGAATTGGCTGAGAATTTATAAAGAACTTACCATCTCCTCTTTTCCTTTAATATTTTTCTCGTTTTCTTCTCGCCTCTCACCCCTCCCTTCTACAGATCTACTATGTTCCTATGTCAATAATAGAGTCCAAGTTCTGTTTTCACTATAGCTGCTGCCTGCTTGTAAAAAAATCCATACATCACCTTGACTACTGCTACATACAATTCATTACTGCCATGTTTACTTTATAGGCAAAACCAAGGTCATTTCAGCTTTTAGTGGTTGGGAAAGAAAAAAATGTTTGCTCTATTTGCTGTTGCTGGACTGAGGTGAAACCTCTAAATATGCAGATAAATCAGGCTCATAAACCTCTAAATATGCCGCCATTAATATTAAGTAGGCTCATAAATCAGTTGCTGATTCTCAAGTTCATTCATTCATGACCATCATATTGACCAACAACAATCACCTAATTTATTGATATTGATCTTTCTTCAAAAGGAGAGGAGATATAGCTGGCGGAGAAAGGGGCTGGGGGTAGGGGGTAGGGACAACAGAACACTGGGATCATTGGGAAAGCTCTCTTTGATATGCAGCCAATTCGTTCTTTGATGATATCAGATTCAATGCTGGACTTAAATAGGCAACGACTAAAGCTGGAAAATGAGATTAAAAATATTACATATGGAGTAAGATGAGAAAGCTAACATATCATGAAATAAGTTATTTAAGATCTTTCAGTAATTAAATACAACAACAAAGATCCTTGGAAGAATGTTGGCATCAATGACCTGAGCAGAAAACTCAGCTTGAATATAGTTTGTGTTCATTTGGGAAAAGAGAGATTCGAGAGAGAGAACGTGGAAACATTATAATAAGGTAGTGAAAAGTGCCTCCGAAACTGTTGCCAGGCTGCCAGCTTGCTTAAATACGGCTTCTTCAGTCTGTATTACTCGTCACTTGAAGCATTACCTCAGCTATGTTACACAAGACTCTTCAATGTACAACAAAAACTCGTGTTAGATCCTCTACACTCCGACATTGATATGGACACTTAAGCACTTCTTTTTGGGATACAATCCACTTGGGCACGCACACGTGTCCATAATTAGTACCCGAGTCTAACATAAAGCTAAAGAGAAATCCATAGATTAGAAGCATAAAGAGTTATGTAGTTTTTGGACAATGGTGTATTAGTTGAATCTTGAATCTGTCTTAAGCATTTATTTGTAGTGCCCACTTGATTTGGATTTATGAATGCATGCCAACTCTAGGCTGCCTATATTTCTTTCTCTGTAAATTTTAACTGTGGCATCTATTTCTCGTGACAGATCTACAAATCTCAGAGGAATGTGCTGCTTTGTTCTGCAGCCTGTCTTCTCTACTGGTATGTGTGCAAAAATAATGAACTCTTAGGTACCCTTTGCTGAATAATTTTGTAGCTTGATTATTTTTGTGTATATTGGATGTATTCTAGGTGCATCTACCGCGTGTGCAAATATAACAAGGATATTGAAAACCTGGAAGAAGTTGAAAAGAGATACAAGAAGCTGTAAATTTCCTCGGCATTCACTTTCGACAGCTATGGAGATTTGAAACTAGTACGGCTGTTTAAAGTCAGGATACACTTGAGCTCAGTCAGGATGACCTTCTTATTGTCTTTCTTTGTGCTTTTTGTTGTTGCTGTTTATAGTGTCTCTTATACTATGAAAACAATCTATGTGAACTCTGAAGACTGCTGGCATGTTCGCCGGAACTTTCTGAGAAATTAAGATTATTGGAGGTTCTTTATTTATTATTGTCAATTTGACATATGTGCATTGTGCAAATGTTGGAATACAAAGATGGGATACTAGATTACAAGACTTGATAAATGTGAGTGAAGAGCCCTACAATATATTTCATCACTACTCATATAGCTAAACTTCTATTTAAATTTAAAATAAATAAAAAGAAGTGAACTTATTTCTCTTTCCTTTGCCAGTGTTATTTACGAATTACAAGAAAC ATAGGTTGTAATTTGTCCTTCTTTTAATGAACTCCTTATAAAAAAAATAAAAATGAATAAATACTACACCTTTATGTCCACGTGGATCGCGTGTCCTTCCTCCTCCTTCAAACACTTAGCAAGTAAGGCATCCGATCGTGCTCGTAGTCAAAAACCAACATCTCCCACCTACGAAGAAGAAAGAGAAAATCAAAATCAGGAGAAAATGGGCTTACAATGGATGATCCTCACCTACGCAGTTGCAGCAGAGGCCGCCATTTTTCTTCTCATCTCACTTCCTTCACCAAAGGTTCTCAAAACTCGTCTGGTTTCCTTAATCTCTCTTATCCTTCAGCCGTTAATGTTCATCGTCCCTTTCGCCGCTTTTCAGCTTCTCGATATTTACTGGAAGTATGAGCACCGATTGACGTGTACTTCTGAGATCTGTACTGCCACTGAAAGAGATCGCTATGAGAAATCGATCTACAAATCTCAGAGGAATGTGCTGCTTTGTTCTGCAGCCTGTCTTCTCTACTGGTGCATCTACCGCGTGTGCAAATATAACAAGGATATTGAAAACCTGGAAGAAGTTGAAAAGAGATACAAGAAGCTGTAAATTTCCTCGGCATTCACTTTCGACAGCTATGGAGATTTGAAACTAGTACGGCTGTTTAAAGTCAGGATACACTTGAGCTCAGTCAGGATGACCTTCTTATTGTCTTTCTTTGTGCTTTTTGTTGTTGCTGTTTATAGTGTCTCTTATACTATGAAAACAATCTATGTGAACTCTGAAGACTGCTGGCATGTTCGCCGGAACTTTCTGAGAAATTAAGATTATTGGAGGTTCTTTATTTATTATTGTCAATTTGACATATGTGCATTGTGCAAATGTTGGAATACAAAGATGGGATACTAGATTACAAGACTTGATAAATGTGAGTGAAGAGCCCTACAATATATTTCATCACTACTCATATAGCTAAACTTCTATTTAAATTTAAAATAAATAAAAAGAAGTGAACTTATTTCTCTTTCCTTTGCCAGTGTTATTTACGAATTACAAGAAAC ATGAATAAATACTACACCTTTATGTCCACGTGGATCGCGTGTCCTTCCTCCTCCTTCAAACACTTAGCAAGTAAGGCATCCGATCGTGCTCGTAGTCAAAAACCAACATCTCCCACCTACGAAGAAGAAAGAGAAAATCAAAATCAGGAGAAAATGGGCTTACAATGGATGATCCTCACCTACGCAGTTGCAGCAGAGGCCGCCATTTTTCTTCTCATCTCACTTCCTTCACCAAAGGTTCTCAAAACTCGTCTGGTTTCCTTAATCTCTCTTATCCTTCAGCCGTTAATGTTCATCGTCCCTTTCGCCGCTTTTCAGCTTCTCGATATTTACTGGAAGTATGAGCACCGATTGACGTGTACTTCTGAGATCTGTACTGCCACTGAAAGAGATCGCTATGAGAAATCGATCTACAAATCTCAGAGGAATGTGCTGCTTTGTTCTGCAGCCTGTCTTCTCTACTGGTGCATCTACCGCGTGTGCAAATATAACAAGGATATTGAAAACCTGGAAGAAGTTGAAAAGAGATACAAGAAGCTGTAA MNKYYTFMSTWIACPSSSFKHLASKASDRARSQKPTSPTYEEERENQNQEKMGLQWMILTYAVAAEAAIFLLISLPSPKVLKTRLVSLISLILQPLMFIVPFAAFQLLDIYWKYEHRLTCTSEICTATERDRYEKSIYKSQRNVLLCSAACLLYWCIYRVCKYNKDIENLEEVEKRYKKL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo07169.1 vs. NCBI nr
Match: gi|902143230|gb|KNA04829.1| (hypothetical protein SOVF_196060 [Spinacia oleracea]) HSP 1 Score: 255.8 bits (652), Expect = 5.800e-65 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
BLAST of Spo07169.1 vs. NCBI nr
Match: gi|731362841|ref|XP_010693104.1| (PREDICTED: uncharacterized protein LOC104906089 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 220.3 bits (560), Expect = 2.700e-54 Identity = 105/129 (81.40%), Postives = 118/129 (91.47%), Query Frame = 1
BLAST of Spo07169.1 vs. NCBI nr
Match: gi|566196689|ref|XP_002317708.2| (hypothetical protein POPTR_0012s03970g, partial [Populus trichocarpa]) HSP 1 Score: 214.5 bits (545), Expect = 1.500e-52 Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = 1
BLAST of Spo07169.1 vs. NCBI nr
Match: gi|590666347|ref|XP_007036950.1| (B-cell receptor-associated 31-like [Theobroma cacao]) HSP 1 Score: 213.8 bits (543), Expect = 2.500e-52 Identity = 102/127 (80.31%), Postives = 116/127 (91.34%), Query Frame = 1
BLAST of Spo07169.1 vs. NCBI nr
Match: gi|470127081|ref|XP_004299507.1| (PREDICTED: uncharacterized protein LOC101300250 [Fragaria vesca subsp. vesca]) HSP 1 Score: 212.6 bits (540), Expect = 5.600e-52 Identity = 103/128 (80.47%), Postives = 117/128 (91.41%), Query Frame = 1
BLAST of Spo07169.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QC27_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_196060 PE=4 SV=1) HSP 1 Score: 255.8 bits (652), Expect = 4.000e-65 Identity = 129/129 (100.00%), Postives = 129/129 (100.00%), Query Frame = 1
BLAST of Spo07169.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BDA4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g045970 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 1.900e-54 Identity = 105/129 (81.40%), Postives = 118/129 (91.47%), Query Frame = 1
BLAST of Spo07169.1 vs. UniProtKB/TrEMBL
Match: B9I4T6_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s03970g PE=4 SV=1) HSP 1 Score: 214.5 bits (545), Expect = 1.000e-52 Identity = 106/151 (70.20%), Postives = 126/151 (83.44%), Query Frame = 1
BLAST of Spo07169.1 vs. UniProtKB/TrEMBL
Match: A0A061FW21_THECC (B-cell receptor-associated 31-like OS=Theobroma cacao GN=TCM_013012 PE=4 SV=1) HSP 1 Score: 213.8 bits (543), Expect = 1.800e-52 Identity = 102/127 (80.31%), Postives = 116/127 (91.34%), Query Frame = 1
BLAST of Spo07169.1 vs. UniProtKB/TrEMBL
Match: A0A0D2P0I0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G002900 PE=4 SV=1) HSP 1 Score: 212.2 bits (539), Expect = 5.100e-52 Identity = 103/127 (81.10%), Postives = 114/127 (89.76%), Query Frame = 1
BLAST of Spo07169.1 vs. TAIR (Arabidopsis)
Match: AT1G48440.1 (B-cell receptor-associated 31-like) HSP 1 Score: 187.2 bits (474), Expect = 8.900e-48 Identity = 89/128 (69.53%), Postives = 107/128 (83.59%), Query Frame = 1
BLAST of Spo07169.1 vs. TAIR (Arabidopsis)
Match: AT3G17780.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 182.2 bits (461), Expect = 2.900e-46 Identity = 86/127 (67.72%), Postives = 107/127 (84.25%), Query Frame = 1
BLAST of Spo07169.1 vs. TAIR (Arabidopsis)
Match: AT5G17190.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 108.2 bits (269), Expect = 5.300e-24 Identity = 55/127 (43.31%), Postives = 82/127 (64.57%), Query Frame = 1
BLAST of Spo07169.1 vs. TAIR (Arabidopsis)
Match: AT3G03160.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 104.0 bits (258), Expect = 9.900e-23 Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo07169.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo07169.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo07169.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0 Position : 0 Zoom : x 1
BLAST of Spo07169.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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