Spo07319 (gene) | SpinachBase

Overview


Name	Spo07319
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 57865664 .. 57868401 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAAAAATGAAAAACCTCTTTCACTTTTGGGCCAACAGAGAGCTAGAGAGAGAATGAAAATTTCATTTAAGCGCCATAAACAAAAGAGAGAAGAGTGGGGGGGAATTTCTAGCGCCATTGTCAATCGAAAGCTAAGAGACTGAAATTTTCATTTGCCCTTTAACCAATTCACAAAAATATTGAGCGCCATAACCAAATCACTGAAATTTTGAGCGCCATAAACGATGTTCCTGTCCCCTTCTGAAACCTCACTTTCTCCTTCTTCTTCATCTTCTACCTTTATTCTCTCTCCTACTTCGGTCGTCCGTGGTATCAACGATAACCCTTCTCTTCATGAGAATCCACCGGCGGAGATCCCCGATGATGTGAAGCCGTCGCTGGTTGTGGTGGACCTTCGCCATATCTGTCCCTCTTTGTCAATTTTGTTTATCAAATTTGTCATCCTTTCTTTTAATTATTGCTAGTTTAGATGATTTCACTCTCTTCAGAATCGATTTTATTATTTTCTTTGCTATTTTATTGAAATTTCAGCATGTCACTGATTTGTGTAGGAGAGAAACCCTTGTTCGTATTACAAGTGAAAACTCGTTTTTTCATTGTTGATTTTTTAGGTTTTTTTATGTGATACTCCGTACTATTTTCAGGGTTTATTGTGTTTTTGATGATATGTTGTTATAATTGATTGATTACAGTTTGCAAGTGATTTGGGTGTTTTTGATTGATCGATTTGATGCTTTACTCTTCACGTGAATTAAAATTTCCTCAATTATCGTATTTTATGGATTGATTTTGACCTTAGTAATTATATAATTTTCCTATAATCTGCTGAACATTAGTAGAACTGATTTTGGGAGAAATAAGATTAATATCAAATGAATTACATTGCATCATATCATAGAATTATGCCGTTTTATTTTACTTGCGTTGTTTGTTTGTAGTTGATGTTTAGTGCCTCTGGTACTTTAACTCGGTTATTTTTCCATCAGAGATGGTTGTAGTTGTAAGCTCTGTCGAAAAAATCCTTGTTTGTTTTGTTAGGCTTTTGATATCTTGAAACGTTTGTTTGCAGTTTCTTGCAGTTTCATTCCATTTACTTCCCTGTAAAATATACTGCTTACTACTATTGTATGAATTGAACTCTGTTCATTTTACAATTTTTTCCACTTCGGACCTCACACTTATTTCACCCCTTAGTAGAAAGTAACTCTCTTATATTATTTTATTGATGAGCTATCTGTGGAGTGTACAAATTCATTGAATTTTATGTGCAATACTCCTTTGCTGTTCAGCTTGTGTTAGTTCGCTTCTTCCCTTCCTGAGGTTAATGCCACTTCAAAGGAAGGATGGTTTGTAATGTAGAAAAATCGGCTGAGATAGTAAATGTTGATAATCTTCCAAGGAAAGGGAATACCAATAAGCGACCTAAATTAGTTCCTACAACAGATTTTCTCTTAGAGTCATTCTTCATGACTAACAGAAACGCAAGTTCAGCAAGAGAAGATGACCGGAGCGATTTGTATGATCTGTCTGTTTTTGAGATGCCCAAAAATAGAGTTGATATTGATCACATGAGTATGCTAATAGGGAATACATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAGTTAGTTCCTCGAGTTTGTGTCTATTTTTCTTTCAGCATGGTTAAATAGATCCTTGGGAGGGTACCAAATTCTGCTCATCCAACAACCATAACAATCTAATATTCTAACATATACCACCACACTGTATTTCTACTTGGATCGGGTTGGATTGTTTGGTACCTCCCTGGAATTTTTGTGATATTCCTCTGGATATTCCTAGCTGAAGTTCAATTTGTGAATTTACATTGTTCTGTTTCTTCTCACTCATCTATAGTTTATTGGCATCTTTTACAGACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGTACTCCCCGTACATATTCCTTTTCCCTATTAGATAAATTTTAACAGTAGATGGCATGAGTTGCATTCAAATATATATACATGTCTTCCTCTGAAATGCATGTTGACTTAGTTTATCTCTTGATCAGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGAAATTATTTGTGATCTTAACGCTAATACTCTGGACTGCAGCCTCCAAAACCCATCTAACCTTCACCATTTGATGAACTAACCCAGAACCAAAGCTGCACTGAACAAAACCAAAACTCTAGGTTCTGATCAGTCTGCTACAAGACTGCGGGAAATCAGAAAATACATTCGAGCTAAACCAGGCACCCTTCAGGTCTGATCGGGTCTATAGATGAAGTGTAGCCCCATTAGTTGTGCTTGTTGGCTTGTAAATGTTTCTTTATTCCACGTCTTTTGATTTTTTTGTTTTCTTCTTATTTTCTTGTCTTTTTCTTGTTGTTTACCATTTCTCGAAAGTTTTAAGGCGGGTTCCAAAAATAGGTGTGTCTGGCATGTGGAACGGTTATTCCTTGGTGTTGCAGGTTTAATCTCATAAAACTTATGGTCAAGCATTACATTCCCTGCAC

mRNA sequence

GGAAAAAAAATGAAAAACCTCTTTCACTTTTGGGCCAACAGAGAGCTAGAGAGAGAATGAAAATTTCATTTAAGCGCCATAAACAAAAGAGAGAAGAGTGGGGGGGAATTTCTAGCGCCATTGTCAATCGAAAGCTAAGAGACTGAAATTTTCATTTGCCCTTTAACCAATTCACAAAAATATTGAGCGCCATAACCAAATCACTGAAATTTTGAGCGCCATAAACGATGTTCCTGTCCCCTTCTGAAACCTCACTTTCTCCTTCTTCTTCATCTTCTACCTTTATTCTCTCTCCTACTTCGGTCGTCCGTGGTATCAACGATAACCCTTCTCTTCATGAGAATCCACCGGCGGAGATCCCCGATGATGTGAAGCCGTCGCTGGTTGTGGTGGACCTTCGCCATATCTGTCCCTCTTTGTCAATTTTGTTTATCAAATTTGTCATCCTTTCTTTTAATTATTGCTAGTTTAGATGATTTCACTCTCTTCAGAATCGATTTTATTATTTTCTTTGCTATTTTATTGAAATTTCAGCATGTCACTGATTTGTGTAGGAGAGAAACCCTTGTTCGTATTACAAGTGAAAACTCGTTTTTTCATTGTTGATTTTTTAGGTTTTTTTATGTGATACTCCGTACTATTTTCAGGGTTTATTGTGTTTTTGATGATATGTTGTTATAATTGATTGATTACAGTTTGCAAGTGATTTGGGTGTTTTTGATTGATCGATTTGATGCTTTACTCTTCACGTGAATTAAAATTTCCTCAATTATCGTATTTTATGGATTGATTTTGACCTTAGTAATTATATAATTTTCCTATAATCTGCTGAACATTAGTAGAACTGATTTTGGGAGAAATAAGATTAATATCAAATGAATTACATTGCATCATATCATAGAATTATGCCGTTTTATTTTACTTGCGTTGTTTGTTTGTAGTTGATGTTTAGTGCCTCTGGTACTTTAACTCGGTTATTTTTCCATCAGAGATGGTTGTAGTTGTAAGCTCTGTCGAAAAAATCCTTGTTTGTTTTGTTAGGCTTTTGATATCTTGAAACGTTTGTTTGCAGTTTCTTGCAGTTTCATTCCATTTACTTCCCTGTAAAATATACTGCTTACTACTATTGTATGAATTGAACTCTGTTCATTTTACAATTTTTTCCACTTCGGACCTCACACTTATTTCACCCCTTAGTAGAAAGTAACTCTCTTATATTATTTTATTGATGAGCTATCTGTGGAGTGTACAAATTCATTGAATTTTATGTGCAATACTCCTTTGCTGTTCAGCTTGTGTTAGTTCGCTTCTTCCCTTCCTGAGGTTAATGCCACTTCAAAGGAAGGATGGTTTGTAATGTAGAAAAATCGGCTGAGATAGTAAATGTTGATAATCTTCCAAGGAAAGGGAATACCAATAAGCGACCTAAATTAGTTCCTACAACAGATTTTCTCTTAGAGTCATTCTTCATGACTAACAGAAACGCAAGTTCAGCAAGAGAAGATGACCGGAGCGATTTGTATGATCTGTCTGTTTTTGAGATGCCCAAAAATAGAGTTGATATTGATCACATGAGTATGCTAATAGGGAATACATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGAAATTATTTGTGATCTTAACGCTAATACTCTGGACTGCAGCCTCCAAAACCCATCTAACCTTCACCATTTGATGAACTAACCCAGAACCAAAGCTGCACTGAACAAAACCAAAACTCTAGGTTCTGATCAGTCTGCTACAAGACTGCGGGAAATCAGAAAATACATTCGAGCTAAACCAGGCACCCTTCAGGTCTGATCGGGTCTATAGATGAAGTGTAGCCCCATTAGTTGTGCTTGTTGGCTTGTAAATGTTTCTTTATTCCACGTCTTTTGATTTTTTTGTTTTCTTCTTATTTTCTTGTCTTTTTCTTGTTGTTTACCATTTCTCGAAAGTTTTAAGGCGGGTTCCAAAAATAGGTGTGTCTGGCATGTGGAACGGTTATTCCTTGGTGTTGCAGGTTTAATCTCATAAAACTTATGGTCAAGCATTACATTCCCTGCAC

Coding sequence (CDS)

ATGTCTAAAGTTTGCACGGCGTTGCAAGAAAGTCAAATTGAAGAGGCCTCACCTGATGATGTGAAATGCCAAATGGCTGAAAGTACTTTTGAGATCTCAAACGAAGCAGATTGGTCAAGAAAGGAATGTGTAGCTGTACCGCTACCCAACAATAGTAGGATAGACATGCCTTTGAACTTCAGTATGCCCCCGAGATTTCTCACATTTCCATATCTGAATGAGTTCTCAGCTCGTTCATCCCCCTGTGAGCCTCCTGGCGAAAGAATGAGAATAGTCAAGCAAGAACTGCAACGCTGGTGA

Protein sequence

MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFSMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo07319.1	Spo07319.1	mRNA

Homology

[Close]

BLAST of Spo07319.1 vs. NCBI nr
Match: gi|902177634|gb|KNA08980.1| (hypothetical protein SOVF_157230 isoform A [Spinacia oleracea])

HSP 1 Score: 203.8 bits (517), Expect = 1.400e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1


		  
Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPCEPPGERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPCEPPGERMRIVKQELQRW 99

[Close]

BLAST of Spo07319.1 vs. NCBI nr
Match: gi|902177635|gb|KNA08981.1| (hypothetical protein SOVF_157230 isoform B [Spinacia oleracea])

HSP 1 Score: 188.3 bits (477), Expect = 6.200e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 1


		  
Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPC    ERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPC----ERMRIVKQELQRW 95

[Close]

BLAST of Spo07319.1 vs. NCBI nr
Match: gi|902189577|gb|KNA11404.1| (hypothetical protein SOVF_135450 [Spinacia oleracea])

HSP 1 Score: 148.3 bits (373), Expect = 7.200e-33
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1


		  
Query: 2   SKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFS 61
           SKVCTALQE+QIEEASPD VK QM E+TFE+SNEADWSRKECV V LPNN R+DMPLNFS
Sbjct: 277 SKVCTALQETQIEEASPDVVKYQMTENTFELSNEADWSRKECVVVALPNN-RVDMPLNFS 336

Query: 62  MPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQ 98
           MP   LTFP  NEFSA +SP EPPGERMRIVKQE Q
Sbjct: 337 MPLDSLTFPNPNEFSALASPFEPPGERMRIVKQEPQ 371

[Close]

BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QP09_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157230 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.000e-49
Identity = 98/99 (98.99%), Postives = 98/99 (98.99%), Query Frame = 1


		  
Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPCEPPGERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPCEPPGERMRIVKQELQRW 99

[Close]

BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QR18_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_157230 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.300e-45
Identity = 94/99 (94.95%), Postives = 94/99 (94.95%), Query Frame = 1


		  
Query: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60
           MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF
Sbjct: 1   MSKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNF 60

Query: 61  SMPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQRW 100
           SMPPRFLTFPY NEFSARSSPC    ERMRIVKQELQRW
Sbjct: 61  SMPPRFLTFPYPNEFSARSSPC----ERMRIVKQELQRW 95

[Close]

BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVV9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_135450 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 5.000e-33
Identity = 77/96 (80.21%), Postives = 82/96 (85.42%), Query Frame = 1


		  
Query: 2   SKVCTALQESQIEEASPDDVKCQMAESTFEISNEADWSRKECVAVPLPNNSRIDMPLNFS 61
           SKVCTALQE+QIEEASPD VK QM E+TFE+SNEADWSRKECV V LPNN R+DMPLNFS
Sbjct: 277 SKVCTALQETQIEEASPDVVKYQMTENTFELSNEADWSRKECVVVALPNN-RVDMPLNFS 336

Query: 62  MPPRFLTFPYLNEFSARSSPCEPPGERMRIVKQELQ 98
           MP   LTFP  NEFSA +SP EPPGERMRIVKQE Q
Sbjct: 337 MPLDSLTFPNPNEFSALASPFEPPGERMRIVKQEPQ 371

The following BLAST results are available for this feature:

BLAST of Spo07319.1 vs. NCBI nr
BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
BLAST of Spo07319.1 vs. ExPASy Swiss-Prot
BLAST of Spo07319.1 vs. TAIR (Arabidopsis)

BLAST of Spo07319.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 3


Match Name	E-value	Identity	Description
gi\|902177634\|gb\|KNA08980.1\|	1.4e-49	98.9	hypothetical protein SOVF_1572...	[more]
gi\|902177635\|gb\|KNA08981.1\|	6.2e-45	94.9	hypothetical protein SOVF_1572...	[more]
gi\|902189577\|gb\|KNA11404.1\|	7.2e-33	80.2	hypothetical protein SOVF_1354...	[more]

BLAST of Spo07319.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 3


Match Name	E-value	Identity	Description
A0A0K9QP09_SPIOL	1.0e-49	98.9	Uncharacterized protein OS=Spi...	[more]
A0A0K9QR18_SPIOL	4.3e-45	94.9	Uncharacterized protein OS=Spi...	[more]
A0A0K9QVV9_SPIOL	5.0e-33	80.2	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo07319.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo07319.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0051607	defense response to virus
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016075	rRNA catabolic process
cellular_component	GO:0005773	vacuole
molecular_function	GO:0005488	binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005515	protein binding
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003824	catalytic activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo17225	0.75	Barchart \| Table
Spo11744	0.73	Barchart \| Table
Spo04985	0.72	Barchart \| Table
Spo20503	0.72	Barchart \| Table
Spo23042	0.71	Barchart \| Table
Spo14240	0.70	Barchart \| Table
Spo26491	0.68	Barchart \| Table
Spo02884	0.68	Barchart \| Table
Spo04128	0.68	Barchart \| Table
Spo09214	0.68	Barchart \| Table
Spo16161	0.68	Barchart \| Table
Spo16680	0.68	Barchart \| Table
Spo19609	0.68	Barchart \| Table
Spo19703	0.68	Barchart \| Table
Spo23179	0.68	Barchart \| Table
Spo04873	0.67	Barchart \| Table
Spo08541	0.67	Barchart \| Table
Spo11296	0.67	Barchart \| Table
Spo20011	0.67	Barchart \| Table
Spo03602	0.67	Barchart \| Table
Spo17710	0.66	Barchart \| Table
Spo18637	0.66	Barchart \| Table
Spo24566	0.66	Barchart \| Table
Spo04742	0.66	Barchart \| Table
Spo16082	0.66	Barchart \| Table
Spo02749	0.66	Barchart \| Table
Spo17220	0.66	Barchart \| Table
Spo04385	0.66	Barchart \| Table
Spo10215	0.66	Barchart \| Table
Spo10671	0.66	Barchart \| Table
Spo17856	0.65	Barchart \| Table
Spo23096	0.65	Barchart \| Table
Spo02254	0.65	Barchart \| Table
Spo21732	0.65	Barchart \| Table